Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g1601 ATGATTATTCAGGTGGGGATAGATCCTTCCACTCCTCCCGAGTTCGAAGAGTTTTGGAATTCTTTCCAACGAGAATTCGAGCTCTTCCTCCCTCTCCCCATGGCGTCGAGGAACCGGACTTTGCTTTTTAGGAAATACAGGGACGCGTTGAGGAGTGTGAGGGTTCCTACCAGCTCGTCGCCTGTTTCTGCATCACCATCGACTAGCTCTGCCGCTGGTGGCCCGGTGATTGAATTGGTTAGCTCATCGTTGTTGAATCCCAATCGGTCGTACGCTCCATTAAGTACTGAGGATCCGGGTAATTCAAGTAAGGGTGCTCTTACCGTTGGTCTACCTCCGGCTTGGGTGGATGTATCTGAAGAAATAGCTGCAAATGTGCAGCGTGCACGAGTGAAGATGGTGGAGTTAGCTAAGGCTCATGCGAAGGCTTTAATGCCTTCATTTGGAGATGGTAAAGAGGATCAACGTTTAATTGAATCTCTCACACAAGACATAACTAATTTAATCAAGAAATCAGAGAAAGGACTCAAGAGACTCTCTGTAGCCGGACCTTCAGAAGATTCCAATATCAGAAAAAATGTTCAGCGATCTCTTGCCACTGATCTTCAGAACCTTTCCATGGAGCTTCGCAAGAAACAATCAACATATTTAAAGCGGCTACGGCAGCAAAAAGAGGAAGGTCAAGATGGGATTGACATAGAGATGAATCTAAATGGAAATAGATCGAGAATGGAGGACGATGATTTAGAACATATGGTATTTAATGAGCATCAGATGGCTAAGCTGCGAAAGAGTGAAGCATTCACCGCCGAAAGAGAGAGAGAGATCCAACAAGTTGTAGAATCCGTGAATGAGCTTGCTCAGATCATGAAGGATCTATCTGTACTTGTCATAGACCAGGGTACCATCATCGATAGAATAGATTACAATATTCAAAATGTTGCAACGACCGTCGATGAGGGCCTTAAGCAACTGCAAAAGGCAGAGAGAACACAGAAACAAGGAGGGATGGTGATGTGCGCATCCGTGCTCATTATCATGTGCTTTGTCATGTTGGTTCTTCTGATCCTCAAAACCGCCAATCAGAGATTTCAGCGTTTTTCGGTTAGGGAAGGGGGTGGGATTTAG 1128 45.3 MIIQVGIDPSTPPEFEEFWNSFQREFELFLPLPMASRNRTLLFRKYRDALRSVRVPTSSSPVSASPSTSSAAGGPVIELVSSSLLNPNRSYAPLSTEDPGNSSKGALTVGLPPAWVDVSEEIAANVQRARVKMVELAKAHAKALMPSFGDGKEDQRLIESLTQDITNLIKKSEKGLKRLSVAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEEGQDGIDIEMNLNGNRSRMEDDDLEHMVFNEHQMAKLRKSEAFTAEREREIQQVVESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVATTVDEGLKQLQKAERTQKQGGMVMCASVLIIMCFVMLVLLILKTANQRFQRFSVREGGGI 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 33562431 33567113 - CePI673135_02g016010.1 Cec02g1601 196654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g1601 375 SMART tSNARE_6 261 328 IPR000727 -
Cec02g1601 375 Pfam SNARE domain 302 354 IPR000727 -
Cec02g1601 375 SUPERFAMILY t-snare proteins 111 321 IPR010989 GO:0016020(InterPro)|GO:0016192(InterPro)
Cec02g1601 375 FunFam Syntaxin-43 112 320 - -
Cec02g1601 375 ProSitePatterns Syntaxin / epimorphin family signature. 272 311 IPR006012 GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro)
Cec02g1601 375 PANTHER SYNTAXIN 124 346 IPR045242 GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER)
Cec02g1601 375 SMART SynN_4 106 221 IPR006011 GO:0016020(InterPro)
Cec02g1601 375 CDD SNARE_syntaxin16 270 327 - -
Cec02g1601 375 Gene3D - 112 320 - -
Cec02g1601 375 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 266 328 IPR000727 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1601 Cec-Chr2:33562431 Cec09g0536 Cec-Chr9:4613302 1.70E-102 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g1601 K08489 - csv:101207998 574.704