Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec02g1601 | ATGATTATTCAGGTGGGGATAGATCCTTCCACTCCTCCCGAGTTCGAAGAGTTTTGGAATTCTTTCCAACGAGAATTCGAGCTCTTCCTCCCTCTCCCCATGGCGTCGAGGAACCGGACTTTGCTTTTTAGGAAATACAGGGACGCGTTGAGGAGTGTGAGGGTTCCTACCAGCTCGTCGCCTGTTTCTGCATCACCATCGACTAGCTCTGCCGCTGGTGGCCCGGTGATTGAATTGGTTAGCTCATCGTTGTTGAATCCCAATCGGTCGTACGCTCCATTAAGTACTGAGGATCCGGGTAATTCAAGTAAGGGTGCTCTTACCGTTGGTCTACCTCCGGCTTGGGTGGATGTATCTGAAGAAATAGCTGCAAATGTGCAGCGTGCACGAGTGAAGATGGTGGAGTTAGCTAAGGCTCATGCGAAGGCTTTAATGCCTTCATTTGGAGATGGTAAAGAGGATCAACGTTTAATTGAATCTCTCACACAAGACATAACTAATTTAATCAAGAAATCAGAGAAAGGACTCAAGAGACTCTCTGTAGCCGGACCTTCAGAAGATTCCAATATCAGAAAAAATGTTCAGCGATCTCTTGCCACTGATCTTCAGAACCTTTCCATGGAGCTTCGCAAGAAACAATCAACATATTTAAAGCGGCTACGGCAGCAAAAAGAGGAAGGTCAAGATGGGATTGACATAGAGATGAATCTAAATGGAAATAGATCGAGAATGGAGGACGATGATTTAGAACATATGGTATTTAATGAGCATCAGATGGCTAAGCTGCGAAAGAGTGAAGCATTCACCGCCGAAAGAGAGAGAGAGATCCAACAAGTTGTAGAATCCGTGAATGAGCTTGCTCAGATCATGAAGGATCTATCTGTACTTGTCATAGACCAGGGTACCATCATCGATAGAATAGATTACAATATTCAAAATGTTGCAACGACCGTCGATGAGGGCCTTAAGCAACTGCAAAAGGCAGAGAGAACACAGAAACAAGGAGGGATGGTGATGTGCGCATCCGTGCTCATTATCATGTGCTTTGTCATGTTGGTTCTTCTGATCCTCAAAACCGCCAATCAGAGATTTCAGCGTTTTTCGGTTAGGGAAGGGGGTGGGATTTAG | 1128 | 45.3 | MIIQVGIDPSTPPEFEEFWNSFQREFELFLPLPMASRNRTLLFRKYRDALRSVRVPTSSSPVSASPSTSSAAGGPVIELVSSSLLNPNRSYAPLSTEDPGNSSKGALTVGLPPAWVDVSEEIAANVQRARVKMVELAKAHAKALMPSFGDGKEDQRLIESLTQDITNLIKKSEKGLKRLSVAGPSEDSNIRKNVQRSLATDLQNLSMELRKKQSTYLKRLRQQKEEGQDGIDIEMNLNGNRSRMEDDDLEHMVFNEHQMAKLRKSEAFTAEREREIQQVVESVNELAQIMKDLSVLVIDQGTIIDRIDYNIQNVATTVDEGLKQLQKAERTQKQGGMVMCASVLIIMCFVMLVLLILKTANQRFQRFSVREGGGI | 375 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 33562431 | 33567113 | - | CePI673135_02g016010.1 | Cec02g1601 | 196654 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec02g1601 | 375 | SMART | tSNARE_6 | 261 | 328 | IPR000727 | - | |
Cec02g1601 | 375 | Pfam | SNARE domain | 302 | 354 | IPR000727 | - | |
Cec02g1601 | 375 | SUPERFAMILY | t-snare proteins | 111 | 321 | IPR010989 | GO:0016020(InterPro)|GO:0016192(InterPro) | |
Cec02g1601 | 375 | FunFam | Syntaxin-43 | 112 | 320 | - | - | |
Cec02g1601 | 375 | ProSitePatterns | Syntaxin / epimorphin family signature. | 272 | 311 | IPR006012 | GO:0005484(InterPro)|GO:0006886(InterPro)|GO:0016020(InterPro) | |
Cec02g1601 | 375 | PANTHER | SYNTAXIN | 124 | 346 | IPR045242 | GO:0000149(PANTHER)|GO:0005484(PANTHER)|GO:0006886(PANTHER)|GO:0006906(PANTHER)|GO:0012505(PANTHER)|GO:0016021(PANTHER)|GO:0031201(PANTHER)|GO:0048278(PANTHER) | |
Cec02g1601 | 375 | SMART | SynN_4 | 106 | 221 | IPR006011 | GO:0016020(InterPro) | |
Cec02g1601 | 375 | CDD | SNARE_syntaxin16 | 270 | 327 | - | - | |
Cec02g1601 | 375 | Gene3D | - | 112 | 320 | - | - | |
Cec02g1601 | 375 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 266 | 328 | IPR000727 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec02g1601 | Cec-Chr2:33562431 | Cec09g0536 | Cec-Chr9:4613302 | 1.70E-102 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec02g1601 | K08489 | - | csv:101207998 | 574.704 |