Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g1771 ATGATGGCAAACCGGTGGTGGACCTCCGGCCAGATGGGTCTTCCAGGAGTTGATCATACATCGACCAGCTCCTCCACCATGAGAAAACCAGATCTGGGAATCTCCATGAACGACAACAGTGGACCCGTTAACAGCAGTGGTGTCGATGACGATGACGATAGAGATAACGGTGGCGATGAACCTAAAGAAGGAGCCGTCGAAGTTCCAACGCGCCGTCCTCGTGGCCGTCCACCGGGATCCAAGAATAAGCCTAAGCCTCCTATCTTCGTTACTAGAGATAGCCCTAATGCCCTAAAAAGCCATGTCATGGAGATTTCTAATGGAGCTGATATCACAGAAAGCGTTGCTCAATTTGCTCGACGGCGACAGAGAGGTGTTTCTGTGCTTAGTGGCAGCGGTACGGTAACGAATGTCACACTCCGGCAACCATCTGCGCCCGGTGCAGTCTTAACCCTTCACGGCCGGTTCGAGATTCTTTCTTTGACTGGAACTTTCCTCCCAGGACCAGCCCCACCCGGGTCAACTGGACTGACAATCTACTTGGCCGGTGGACAAGGGCAGGTGGTGGGTGGCAGCGTAGTCGGACCACTCACCGCTGCCGGCCCAGTGATGGTGATCGCTGCAACGTTTTCCAACGCGACATACGAAAGATTACCTTTGGAAGAGGAAGAAGAAGGCGGCGGAGTAGGAGCACAAGGGCACACATCAGCAGGCGGTGGTGCAGGCGACGGTTCGCCACAAGGCATCGGAGGCGGAGGCGGAGTCGGAGATCCGTCAGCTATGCCTCCGCTGTACAATTTACCGCCGAACTTGCTACCGAATGGCGGCGGCGGGCAGATGAATCAGGAGGCTTATTCGTGGGCTCACGGCGGCCGGCCGTCGTTTTAA 888 55.97 MMANRWWTSGQMGLPGVDHTSTSSSTMRKPDLGISMNDNSGPVNSSGVDDDDDRDNGGDEPKEGAVEVPTRRPRGRPPGSKNKPKPPIFVTRDSPNALKSHVMEISNGADITESVAQFARRRQRGVSVLSGSGTVTNVTLRQPSAPGAVLTLHGRFEILSLTGTFLPGPAPPGSTGLTIYLAGGQGQVVGGSVVGPLTAAGPVMVIAATFSNATYERLPLEEEEEGGGVGAQGHTSAGGGAGDGSPQGIGGGGGVGDPSAMPPLYNLPPNLLPNGGGGQMNQEAYSWAHGGRPSF 295
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 35542995 35544063 + CePI673135_02g017710.1 Cec02g1771 196824
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g1771 295 FunFam AT-hook motif nuclear-localized protein 98 225 - -
Cec02g1771 295 MobiDBLite consensus disorder prediction 1 96 - -
Cec02g1771 295 SUPERFAMILY AF0104/ALDC/Ptd012-like 96 223 - -
Cec02g1771 295 CDD DUF296 99 182 IPR005175 -
Cec02g1771 295 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 40 293 IPR014476 GO:0003680(InterPro)|GO:0003680(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cec02g1771 295 MobiDBLite consensus disorder prediction 14 46 - -
Cec02g1771 295 Pfam Plants and Prokaryotes Conserved (PCC) domain 100 211 IPR005175 -
Cec02g1771 295 Gene3D - 99 225 - -
Cec02g1771 295 ProSiteProfiles PPC domain profile profile. 95 233 IPR005175 -
Cec02g1771 295 PIRSF ESCAROLA 11 295 IPR014476 GO:0003680(InterPro)
Cec02g1771 295 MobiDBLite consensus disorder prediction 221 278 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g0333 Cec-Chr2:3063953 Cec02g1771 Cec-Chr2:35542995 1.80E-58 dispersed
Cec02g1771 Cec-Chr2:35542995 Cec07g0387 Cec-Chr7:3952144 4.00E-70 dispersed
Cec02g1771 Cec-Chr2:35542995 Cec02g1774 Cec-Chr2:35577057 6.40E-20 proximal
Cec06g1643 Cec-Chr6:30034982 Cec02g1771 Cec-Chr2:35542995 2.10E-60 transposed
Cec02g1771 Cec-Chr2:35542995 Cec05g0521 Cec-Chr5:4157903 7.50E-77 wgd
Cec02g1771 Cec-Chr2:35542995 Cec06g0693 Cec-Chr6:7862803 5.00E-57 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g1771 - - - 0.0