Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g1896 ATGCGAAAATTTAATTCCGTGTGTCAGAGCAAGAAAGAGAAGAGCAGGAAGGGCAGAAGACATCGAATATCCGTCTTGATCCTGAAGCCTTTCTCCTTCCTTCTTTATCTCTTCCCTATAAAGTCGCAGTTTCTGCAGTCATACTTCTTTCCAAGATCATCATCATCATCTGCTTCTTCATCGTTGTCGTTATCTTCATCTTCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCTGTAATGAAATTCGAAGAGCAGAACCTGAAGCATCAATCTGAACAGATGTGCAGGACTATTGAGGTGGATACAATTGATCACCATCGCAGTATTTCGTCGCTACTCGTAATGGAAGCTTCCGAAGACTGCGACAGGGACGGTGACGGCCTCTATATTCCTCCTCTCAACTTTTCCATGGTTGATAATGGCATTTTCCGCTCCGGCTTCCCCGACTCTCCTAACTTCTCCTTCCTCCAAACCCTAGGTCTCCGTTCCATTATATGTTTATGTCCGGAGCCGTATCCGGAACACAACATGGAGTTCCTCAAGTCGAACGGGATTAGATTGTTTCAATTTGGAATCGAAAGCAATAAGGAGCCTTTCGTGAACATCCCAGATGATATGATTCGTGAAGCACTGAAAGTTGTCCTTGACGATAGAAATCATCCGGTTCTCATACATTGCAAAAGAGGAAAGCATCGGACAGGTTGTCTTGTGGGATGCCTGAGAAAAGTGCAGAGGTGGTGCCTCACTTCTGTGTTTGATGAGTACCAAAGGTTTGCAGCTGCAAAAGCAAGAATTTCAGACCAGAGGTTCATGGAGTTGTTTGATATCTCTGGCTTGAAGCATCTTCCCATGTCATTCTCATGCTCAAAGAGCTGTATGCTCATCTCTATCGCTGGTTCCTTCCAAGACGAAAGCTCGAAGCTCAGTGGAAAAAGCTTATGCGGTGTAAACTTCGCTGGAGTTCTTCCTCAGTGA 984 44.51 MRKFNSVCQSKKEKSRKGRRHRISVLILKPFSFLLYLFPIKSQFLQSYFFPRSSSSSASSSLSLSSSSSSSSSSSSSSSSAVMKFEEQNLKHQSEQMCRTIEVDTIDHHRSISSLLVMEASEDCDRDGDGLYIPPLNFSMVDNGIFRSGFPDSPNFSFLQTLGLRSIICLCPEPYPEHNMEFLKSNGIRLFQFGIESNKEPFVNIPDDMIREALKVVLDDRNHPVLIHCKRGKHRTGCLVGCLRKVQRWCLTSVFDEYQRFAAAKARISDQRFMELFDISGLKHLPMSFSCSKSCMLISIAGSFQDESSKLSGKSLCGVNFAGVLPQ 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36733456 36737054 - CePI673135_02g018960.1 Cec02g1896 196949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g1896 327 FunFam probable tyrosine-protein phosphatase At1g05000 131 281 - -
Cec02g1896 327 CDD PFA-DSP_Siw14 131 278 - -
Cec02g1896 327 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 200 240 IPR000387 GO:0016311(InterPro)
Cec02g1896 327 Pfam Tyrosine phosphatase family 132 283 IPR004861 -
Cec02g1896 327 ProSiteProfiles Dual specificity protein phosphatase domain profile. 137 291 IPR020422 GO:0006470(InterPro)
Cec02g1896 327 PANTHER TYROSINE-PROTEIN PHOSPHATASE 86 288 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Cec02g1896 327 ProSitePatterns Tyrosine specific protein phosphatases active site. 227 237 IPR016130 GO:0016311(InterPro)
Cec02g1896 327 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 133 279 IPR029021 -
Cec02g1896 327 Gene3D Protein tyrosine phosphatase superfamily 132 281 IPR029021 -
Cec02g1896 327 PRINTS Plant and fungal dual specificity phosphatase signature 132 149 IPR020428 GO:0016791(InterPro)
Cec02g1896 327 PRINTS Plant and fungal dual specificity phosphatase signature 205 219 IPR020428 GO:0016791(InterPro)
Cec02g1896 327 PRINTS Plant and fungal dual specificity phosphatase signature 169 182 IPR020428 GO:0016791(InterPro)
Cec02g1896 327 PRINTS Plant and fungal dual specificity phosphatase signature 188 202 IPR020428 GO:0016791(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g1081 Cec-Chr3:22447885 Cec02g1896 Cec-Chr2:36733456 7.10E-63 transposed
Cec02g1896 Cec-Chr2:36733456 Cec09g1099 Cec-Chr9:10827108 8.60E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g1896 K18045 - csv:101222170 415.231