Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g1896 ATGCGAAAATTTAATTCCGTGTGTCAGAGCAAGAAAGAGAAGAGCAGGAAGGGCAGAAGACATCGAATATCCGTCTTGATCCTGAAGCCTTTCTCCTTCCTTCTTTATCTCTTCCCTATAAAGTCGCAGTTTCTGCAGTCATACTTCTTTCCAAGATCATCATCATCATCTGCTTCTTCATCGTTGTCGTTATCTTCATCTTCATCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAGCTGTAATGAAATTCGAAGAGCAGAACCTGAAGCATCAATCTGAACAGATGTGCAGGACTATTGAGGTGGATACAATTGATCACCATCGCAGTATTTCGTCGCTACTCGTAATGGAAGCTTCCGAAGACTGCGACAGGGACGGTGACGGCCTCTATATTCCTCCTCTCAACTTTTCCATGGTTGATAATGGCATTTTCCGCTCCGGCTTCCCCGACTCTCCTAACTTCTCCTTCCTCCAAACCCTAGGTCTCCGTTCCATTATATGTTTATGTCCGGAGCCGTATCCGGAACACAACATGGAGTTCCTCAAGTCGAACGGGATTAGATTGTTTCAATTTGGAATCGAAAGCAATAAGGAGCCTTTCGTGAACATCCCAGATGATATGATTCGTGAAGCACTGAAAGTTGTCCTTGACGATAGAAATCATCCGGTTCTCATACATTGCAAAAGAGGAAAGCATCGGACAGGTTGTCTTGTGGGATGCCTGAGAAAAGTGCAGAGGTGGTGCCTCACTTCTGTGTTTGATGAGTACCAAAGGTTTGCAGCTGCAAAAGCAAGAATTTCAGACCAGAGGTTCATGGAGTTGTTTGATATCTCTGGCTTGAAGCATCTTCCCATGTCATTCTCATGCTCAAAGAGCTGTATGCTCATCTCTATCGCTGGTTCCTTCCAAGACGAAAGCTCGAAGCTCAGTGGAAAAAGCTTATGCGGTGTAAACTTCGCTGGAGTTCTTCCTCAGTGA 984 44.51 MRKFNSVCQSKKEKSRKGRRHRISVLILKPFSFLLYLFPIKSQFLQSYFFPRSSSSSASSSLSLSSSSSSSSSSSSSSSSAVMKFEEQNLKHQSEQMCRTIEVDTIDHHRSISSLLVMEASEDCDRDGDGLYIPPLNFSMVDNGIFRSGFPDSPNFSFLQTLGLRSIICLCPEPYPEHNMEFLKSNGIRLFQFGIESNKEPFVNIPDDMIREALKVVLDDRNHPVLIHCKRGKHRTGCLVGCLRKVQRWCLTSVFDEYQRFAAAKARISDQRFMELFDISGLKHLPMSFSCSKSCMLISIAGSFQDESSKLSGKSLCGVNFAGVLPQ 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36733456 36737054 - CePI673135_02g018960.1 Cec02g1896 196949

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g1896 327 FunFam probable tyrosine-protein phosphatase At1g05000 131 281 - -
Cec02g1896 327 CDD PFA-DSP_Siw14 131 278 - -
Cec02g1896 327 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 200 240 IPR000387 GO:0016311(InterPro)
Cec02g1896 327 Pfam Tyrosine phosphatase family 132 283 IPR004861 -
Cec02g1896 327 ProSiteProfiles Dual specificity protein phosphatase domain profile. 137 291 IPR020422 GO:0006470(InterPro)
Cec02g1896 327 PANTHER TYROSINE-PROTEIN PHOSPHATASE 86 288 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Cec02g1896 327 ProSitePatterns Tyrosine specific protein phosphatases active site. 227 237 IPR016130 GO:0016311(InterPro)
Cec02g1896 327 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 133 279 IPR029021 -
Cec02g1896 327 Gene3D Protein tyrosine phosphatase superfamily 132 281 IPR029021 -
Cec02g1896 327 PRINTS Plant and fungal dual specificity phosphatase signature 132 149 IPR020428 GO:0016791(InterPro)
Cec02g1896 327 PRINTS Plant and fungal dual specificity phosphatase signature 205 219 IPR020428 GO:0016791(InterPro)
Cec02g1896 327 PRINTS Plant and fungal dual specificity phosphatase signature 169 182 IPR020428 GO:0016791(InterPro)
Cec02g1896 327 PRINTS Plant and fungal dual specificity phosphatase signature 188 202 IPR020428 GO:0016791(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g1896 K18045 - - csv:101222170 415.231
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g1081 Cec-Chr3:22447885 Cec02g1896 Cec-Chr2:36733456 7.10E-63 transposed
Cec02g1896 Cec-Chr2:36733456 Cec09g1099 Cec-Chr9:10827108 8.60E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g443 . . . . Bpe12g00275 Bpe15g00169 Bma03g01308 Bma08g00533 . . Cma02g00065 Cma20g00235 Car02g00052 Car20g00205 Sed05g1894 . . Bhi05g02097 Tan02g0134 Cmetu05g0487 . . . . Cla02g01771 Cam02g1872 Cec02g1896 Cco02g1936 Clacu02g1854 Cmu02g1800 . . Cone10ag1396 Cone8ag1552 . Lsi10g01569 . Chy11g00950 . Blo04g01214 Blo13g00337 . Bda15g00865 Bpe14g00621 . . . Sed01g0708 Cmo02g00063 Cmo20g00254 . . Car11g01620 . Cpe16g00749 . Bhi10g01060 Tan05g0690 Cmetu11g0212 . Hepe08g0587 . . . . . . . . . Lsi11g01669 Csa06g02393 . Cme11g01505
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec04g1397 . 57 630 Protein tyrosine phosphatase (PTP) family AT3G50110 62.3 4.4e-191 664.8
Cec02g0662 . 42 612 Protein tyrosine phosphatase (PTP) family AT3G50110 58.1 7.7e-180 627.5
Cec10g1555 . 289 658 Protein tyrosine phosphatase (PTP) family AT5G39400 69.2 1.4e-153 539.7
Cec08g0834 . 1 684 Protein tyrosine phosphatase (PTP) family AT3G10550 74.3 1.3e-299 1025.8
Cec08g0834 . 1 684 Protein tyrosine phosphatase (PTP) family AT5G04540 71.1 2.8e-286 981.5
Cec06g1416 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1085.9
Cec05g1807 . 1 1362 Protein tyrosine phosphatase (PTP) family AT5G58160 50.8 1.4e-305 1046.2
Cec09g1024 . 87 351 Protein tyrosine phosphatase (PTP) family AT1G71860 65.4 3.5e-102 368.6
Cec06g2025 . 201 1098 Protein tyrosine phosphatase (PTP) family AT5G23720 65.5 0.0e+00 1098.2
Cec06g0587 . 75 214 Protein tyrosine phosphatase (PTP) family AT3G06110 57.1 2.0e-42 169.1
Cec09g2184 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.2e-71 265.4
Cec05g2366 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 69.4 1.1e-114 409.8
Cec07g0550 . 10 271 Protein tyrosine phosphatase (PTP) family AT3G10940 65.3 6.2e-97 350.9
Cec10g1431 . 143 591 Protein tyrosine phosphatase (PTP) family AT3G01510 72.2 2.5e-201 698.4
Cec02g1896 . 91 292 Protein tyrosine phosphatase (PTP) family AT2G32960 59.5 1.8e-74 276.2
Cec09g1099 . 25 233 Protein tyrosine phosphatase (PTP) family AT2G32960 63.9 2.0e-73 272.7
Cec03g1081 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 51.5 1.6e-54 209.9
Cec10g0247 . 83 415 Protein tyrosine phosphatase (PTP) family AT2G35680 55.2 7.2e-100 360.9
Cec11g0207 . 17 263 Protein tyrosine phosphatase (PTP) family AT2G35680 55.3 1.3e-80 297.0
Cec11g0207 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.3e-45 179.9
Cec10g0247 . 119 294 Protein tyrosine phosphatase (PTP) family AT5G56610 50.6 5.9e-43 171.0
Cec02g1896 . 125 293 Protein tyrosine phosphatase (PTP) family AT4G03960 78.1 2.3e-77 285.4
Cec09g1099 . 34 233 Protein tyrosine phosphatase (PTP) family AT4G03960 64.0 6.0e-70 260.8
Cec03g1081 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.7 1.4e-58 223.0
Cec03g1081 . 7 196 Protein tyrosine phosphatase (PTP) family AT3G02800 71.6 3.8e-80 294.7
Cec02g1896 . 116 288 Protein tyrosine phosphatase (PTP) family AT3G02800 60.7 4.5e-57 218.0
Cec07g0343 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 7.3e-63 239.2
Cec10g1555 . 289 658 Protein tyrosine phosphatase (PTP) family AT5G39400 69.2 1.4e-153 539.7
Cec02g0662 . 33 612 Protein tyrosine phosphatase (PTP) family AT3G19420 66.7 1.9e-220 762.3
Cec04g1397 . 55 630 Protein tyrosine phosphatase (PTP) family AT3G19420 60.8 1.0e-197 686.8
Cec04g1397 . 57 630 Protein tyrosine phosphatase (PTP) family AT3G50110 62.3 4.4e-191 664.8
Cec02g0662 . 42 612 Protein tyrosine phosphatase (PTP) family AT3G50110 58.1 7.7e-180 627.5
Cec06g1416 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 55.5 0.0e+00 1085.9
Cec05g1807 . 1 1362 Protein tyrosine phosphatase (PTP) family AT5G58160 50.8 1.4e-305 1046.2
Cec08g0834 . 1 684 Protein tyrosine phosphatase (PTP) family AT3G10550 74.3 1.3e-299 1025.8
Cec08g0834 . 1 684 Protein tyrosine phosphatase (PTP) family AT5G04540 71.1 2.8e-286 981.5
Cec02g2310 . 67 249 Protein tyrosine phosphatase (PTP) family AT3G44620 64.6 6.7e-69 257.7
Cec10g0184 . 22 308 Protein tyrosine phosphatase (PTP) family AT2G35320 63.4 3.2e-107 385.2
Cec04g0863 . 1 721 Protein tyrosine phosphatase (PTP) family AT3G09100 65.7 8.2e-281 963.0
Cec04g0863 . 5 721 Protein tyrosine phosphatase (PTP) family AT5G01290 61.3 1.2e-252 869.4
Cec04g0863 . 86 721 Protein tyrosine phosphatase (PTP) family AT5G28210 52.4 5.8e-180 627.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001007 2 3 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 4 4 1 2 2 2 2 2 2 2 7 6 2 83