Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g1911 ATGGATGGCTCAGACGGAACCTCTGGCGGCGCTCCGCCGCCATTTCTGACCAAAACATATGAGATGGTGGATGATCCGATGACCAATGCCATCGTATCGTGGAGTCAAAGTGGTTTCAGCTTTGTGGTTTGGAACCCACCGGAATTCGCACAAGAACTACTTCCGATTTATTTCAAACACAACAATTTTTCTAGTTTCGTTCGTCAATTAAACACTTATGGGTTTAGAAAAATCGATCGAGAACAATGGGAATTCGCGAACGAGGGGTTTGTAAGAGGACGAACCCATCTTCTAAAAAGCATCCATAGAAGAAAACCAATCTACAGCCATAGCCAGAGCAATAGCCATGGAAATGGAGCTCCATTATCAGAACAAGAAAGACAAGAACTCGAGCAAAAAATCAAAACCCTTCATCAAGAAAAGACCATTCTCCAATCCCAATTACAGAAACACGAAAACGAAAAAGAACAAATTGGGCTTCAAATTCAAACAATCTGCCAGCAATTATGGCGAATGGGGAATCAACAAAAGCAGCTAATTGGGATATTGGGAGCAGAGTTGCAGAAGCATCAGCAGAGCAAAAAGAGGAAAATGGGGAAAGTGAATGAGTTATTAGTTGAAGAATGGACAGAATTTGAGAGAGATGAGAAGAATAATATGAAGAAGAAGGTGAAGGTTCCGCCATTGGAGCTGATGGGGAAGCTGGAATTATCATTGGGGTTGTGTGAGGATTTGCTTTGCAATGTGGCGCAGGTTCTGAGGGAAGGGAAGGAAATGGAAGTGAAAAAAGAAGGGGAAATGAGGAATGGAGTGAATGATGTGTTTTGGGAACAATTCTTGACGGAGATTCCAGGGTCGTCCAAAGTTAGTGAAGTTTATTTGGATAGAAGGAACAATGTTGTAAGGGGAAAGCAAACGTACCGTACGTACGGTTTCGTTTCGGTGTTTGTGCCCTTGGGGTTTTCGGCCGATATCCGAAATTCAACAAATAGCCGTCCGTCGTCGTCTCAAATCGGTGCTAAACCCTGTATCTTTATGCGTAGCTCAAAGAGGACGAGGTCTGAAGAGGGTCAAAATGATTGGATTAGTCAGCTTCCGGAATCTGTTCTTGTTGACATTCTTTCGTATTTACCAACAAAGGATGCTGTAAAGATGACATTGATTTCAAGATTCAGGAATCTTTGGACCTATATTCGTTGTCTCTCCTTTGATGAATGTGCATATCATGACCACAGTAGTTATGATGGTGAAAATTATGATGGTCCACATTATGATGAAAGTTTCCTAACTCTAATTCGTCATGTCTTGATACTTCATGAACGTACTACAATTGATGAGTTTCATCTCAAATTTGCTTTCAATTTGTTTAATGCTATTCATGATGATCATTATAATTCTGATGGTTATGCATCTAAAGAAAGACGAATGGCAAGTGAGCTTACTACATGGATTAAATTTTCTTTGAGGAAACAAGTTAAGGTTCTTGATATTGATTTATTAGGATGTGGTTTGTCAGAGCCAGAAGTAAATTATGAACTGCCTACTAGAATTTTAACTAATAACTATCTAAAGGAGCTCAGTTTGGCTGGCTGTGGAATCGAGGAAAAAGGGCGTATTCATCTGACGTCTCTCACTATGCTTTCGCTCAAGGAAATAATATTGAGTGATAAGATTATGGGTGAAATCATTGTAGGATGCCCAATGCTTGAAGAACTTTCTCTTGATGGATGTTGTGGTCTTCGTAAGCTGAAGTTGACTACTTCTAATATCAAGAGATTGAGGATTTTTATTGGATGGAGAAATGAAGTGGCAAATTCAAGGTTGGAGATTAGCTGCCCTGGTCTCAAATCATTAGAACTTGCTGGATCAATACAGCTTGTACAGTTAAAGTATTCATCTTCTATTTCCGACGCCTCCCTTTATTATAGCCGCACCTTCATGTGCAAACGCATGATATATGAAAAAGTTCAAATGCTGCTGTGGAAGCTAGCTGAAGTCAATGTTTTCATACCATGCACATGGACTATTTTGATCTTCACAATATGGGAGTTGACATATGTGCCAATTCCTGTCACTGGTTGGAAATCTGTAGAGTTCAGACTTCTTTTCACAAAGTGGCACCTGCCTGGAATATGCAGCATTCTCAGGAATTCACATTGGTTGGAAACACTGACTTTCTACATTTACCCAGGATCATACTCAACATTCTTGACTGAGGAAGCAAAGTGGATGGAGGCATATGAATTTGATGGTAAAGATTACTGGAAGTCACAGAATGGCGATTACCGTGGCCTCAGAAAGTACCTCAAAACGGTTATGATATACGGATATGTGACTGAGCCATATGTGTTGGAGCTTGTAGAATTTCTATTGAAGAATGCCTTGGTCCTCGAAAAGATGGTCATTTCCACCAAGAGGACTCTCCAGCCCATTCACCAATATGAATTATTCAAAGACGCTGTCTTTGATCAGGAGGATCGTTTCACTCCTGAGGAACTACTTCAGTTTTCTCAGAAACTGTTAACTTTTCCCAGGGCCTCCAAGTCTGCTGTAATTCAGTTCTGCTAA 2568 40.5 MDGSDGTSGGAPPPFLTKTYEMVDDPMTNAIVSWSQSGFSFVVWNPPEFAQELLPIYFKHNNFSSFVRQLNTYGFRKIDREQWEFANEGFVRGRTHLLKSIHRRKPIYSHSQSNSHGNGAPLSEQERQELEQKIKTLHQEKTILQSQLQKHENEKEQIGLQIQTICQQLWRMGNQQKQLIGILGAELQKHQQSKKRKMGKVNELLVEEWTEFERDEKNNMKKKVKVPPLELMGKLELSLGLCEDLLCNVAQVLREGKEMEVKKEGEMRNGVNDVFWEQFLTEIPGSSKVSEVYLDRRNNVVRGKQTYRTYGFVSVFVPLGFSADIRNSTNSRPSSSQIGAKPCIFMRSSKRTRSEEGQNDWISQLPESVLVDILSYLPTKDAVKMTLISRFRNLWTYIRCLSFDECAYHDHSSYDGENYDGPHYDESFLTLIRHVLILHERTTIDEFHLKFAFNLFNAIHDDHYNSDGYASKERRMASELTTWIKFSLRKQVKVLDIDLLGCGLSEPEVNYELPTRILTNNYLKELSLAGCGIEEKGRIHLTSLTMLSLKEIILSDKIMGEIIVGCPMLEELSLDGCCGLRKLKLTTSNIKRLRIFIGWRNEVANSRLEISCPGLKSLELAGSIQLVQLKYSSSISDASLYYSRTFMCKRMIYEKVQMLLWKLAEVNVFIPCTWTILIFTIWELTYVPIPVTGWKSVEFRLLFTKWHLPGICSILRNSHWLETLTFYIYPGSYSTFLTEEAKWMEAYEFDGKDYWKSQNGDYRGLRKYLKTVMIYGYVTEPYVLELVEFLLKNALVLEKMVISTKRTLQPIHQYELFKDAVFDQEDRFTPEELLQFSQKLLTFPRASKSAVIQFC 855
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36919098 36924793 - CePI673135_02g019110.1 Cec02g1911 196964

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g1911 855 CDD F-box_AtFBL13-like 362 396 IPR053781 -
Cec02g1911 855 ProSitePatterns HSF-type DNA-binding domain signature. 54 78 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec02g1911 855 FunFam Heat shock transcription factor 1 8 105 - -
Cec02g1911 855 SMART hsfneu3 11 104 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec02g1911 855 Gene3D - 9 105 IPR036388 -
Cec02g1911 855 PRINTS Heat shock factor (HSF) domain signature 66 78 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec02g1911 855 PRINTS Heat shock factor (HSF) domain signature 15 38 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec02g1911 855 PRINTS Heat shock factor (HSF) domain signature 53 65 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec02g1911 855 ProSiteProfiles F-box domain profile. 359 390 IPR001810 GO:0005515(InterPro)
Cec02g1911 855 SMART 9598neu4hmm 763 855 IPR006566 -
Cec02g1911 855 SUPERFAMILY RNI-like 507 724 - -
Cec02g1911 855 MobiDBLite consensus disorder prediction 107 122 - -
Cec02g1911 855 Pfam HSF-type DNA-binding 15 104 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec02g1911 855 SUPERFAMILY F-box domain 358 418 IPR036047 GO:0005515(InterPro)
Cec02g1911 855 Coils Coil 120 161 - -
Cec02g1911 855 SUPERFAMILY Winged helix DNA-binding domain 11 104 IPR036390 -
Cec02g1911 855 MobiDBLite consensus disorder prediction 105 128 - -
Cec02g1911 855 Pfam FBD 766 802 IPR006566 -
Cec02g1911 855 Gene3D Ribonuclease Inhibitor 468 672 IPR032675 -
Cec02g1911 855 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 11 289 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0034605(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g1911 K09419 - - csv:101209866 949.118
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1911 Cec-Chr2:36919098 Cec10g0148 Cec-Chr10:1430056 3.90E-49 dispersed
Cec06g1966 Cec-Chr6:32936763 Cec02g1911 Cec-Chr2:36919098 2.70E-07 transposed
Cec07g1469 Cec-Chr7:30291305 Cec02g1911 Cec-Chr2:36919098 1.60E-08 transposed
Cec02g1911 Cec-Chr2:36919098 Cec03g0671 Cec-Chr3:7237160 5.90E-50 wgd
Cec02g1911 Cec-Chr2:36919098 Cec04g2104 Cec-Chr4:38973251 3.30E-48 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g0572 . 37 237 HSF AT4G17750 59.6 2.3e-62 236.9
Cec09g0708 . 76 317 HSF AT4G17750 51.0 1.8e-59 227.3
Cec08g1768 . 42 242 HSF AT4G17750 54.6 5.9e-58 222.2
Cec03g0671 . 13 158 HSF AT4G17750 56.1 3.8e-41 166.4
Cec01g0295 . 352 490 HSF AT4G17750 56.8 2.7e-39 160.2
Cec08g1659 . 14 118 HSF AT4G17750 69.5 3.6e-39 159.8
Cec05g2220 . 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Cec05g0572 . 38 242 HSF AT5G16820 57.0 3.6e-60 229.6
Cec07g0080 . 41 262 HSF AT5G16820 52.6 2.3e-59 226.9
Cec09g0708 . 77 289 HSF AT5G16820 54.0 5.3e-56 215.7
Cec08g1768 . 43 253 HSF AT5G16820 51.1 4.5e-55 212.6
Cec04g2104 . 62 244 HSF AT5G16820 50.3 1.5e-42 171.0
Cec03g0671 . 9 150 HSF AT5G16820 57.2 4.4e-42 169.5
Cec06g0919 . 10 176 HSF AT5G16820 51.6 5.7e-42 169.1
Cec02g1911 . 13 188 HSF AT5G16820 50.3 3.7e-41 166.4
Cec10g0148 . 13 515 HSF AT1G32330 53.0 1.1e-120 430.6
Cec05g0572 . 26 227 HSF AT1G32330 54.0 1.0e-59 228.0
Cec09g0708 . 65 285 HSF AT1G32330 51.8 9.7e-58 221.5
Cec07g0080 . 27 226 HSF AT1G32330 52.6 6.3e-57 218.8
Cec08g1768 . 31 223 HSF AT1G32330 54.1 1.0e-54 211.5
Cec08g1659 . 20 117 HSF AT1G32330 72.4 2.9e-38 156.8
Cec05g2220 . 22 117 HSF AT1G32330 71.9 1.1e-37 154.8
Cec07g0080 . 41 262 HSF AT3G02990 53.1 2.8e-62 236.5
Cec05g0572 . 38 241 HSF AT3G02990 57.6 1.8e-61 233.8
Cec09g0708 . 77 300 HSF AT3G02990 52.4 1.9e-58 223.8
Cec08g1768 . 43 242 HSF AT3G02990 51.7 5.7e-55 212.2
Cec06g0919 . 10 172 HSF AT3G02990 50.3 3.6e-41 166.4
Cec03g0671 . 9 158 HSF AT3G02990 54.3 1.4e-40 164.5
Cec05g0572 . 25 287 HSF AT2G26150 52.3 1.5e-68 256.9
Cec09g0708 . 65 284 HSF AT2G26150 54.3 5.0e-64 241.9
Cec10g0148 . 8 243 HSF AT2G26150 55.7 3.0e-61 232.6
Cec03g0671 . 5 156 HSF AT2G26150 51.3 2.3e-40 163.3
Cec02g1911 . 2 189 HSF AT4G18880 52.1 5.6e-51 198.7
Cec05g0355 . 6 462 HSF AT4G13980 52.6 8.1e-118 421.0
Cec02g1911 . 4 183 HSF AT4G13980 50.6 1.7e-43 174.1
Cec05g0572 . 26 218 HSF AT5G43840 54.4 1.6e-55 213.4
Cec08g1768 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Cec05g0572 . 26 354 HSF AT3G22830 50.1 1.8e-89 326.6
Cec07g0080 . 16 350 HSF AT3G22830 51.2 6.4e-87 318.2
Cec08g1768 . 31 253 HSF AT3G22830 54.1 2.0e-64 243.4
Cec10g0148 . 29 242 HSF AT3G22830 58.9 1.1e-62 237.7
Cec03g0671 . 13 158 HSF AT3G22830 52.0 1.9e-38 157.1
Cec09g0708 . 64 375 HSF AT3G51910 51.4 8.7e-72 267.3
Cec07g0080 . 26 322 HSF AT3G51910 52.2 1.1e-69 260.4
Cec08g1768 . 31 223 HSF AT3G51910 56.0 4.8e-54 208.4
Cec08g1768 . 31 230 HSF AT3G63350 52.5 3.4e-50 195.7
Cec02g1911 . 5 140 HSF AT3G63350 56.6 3.8e-38 155.6
Cec11g0180 . 32 261 HSF AT5G54070 50.2 3.2e-52 202.6
Cec04g1370 . 46 334 HSF AT4G36990 52.4 1.0e-70 263.8
Cec05g0957 . 589 696 HSF AT4G36990 64.8 3.9e-38 155.6
Cec08g1659 . 17 115 HSF AT5G62020 67.7 1.8e-38 156.8
Cec01g0295 . 391 711 HSF AT4G11660 51.8 2.1e-79 293.1
Cec08g1659 . 16 121 HSF AT4G11660 71.7 3.7e-44 176.0
Cec04g1370 . 46 148 HSF AT4G11660 72.8 1.7e-41 167.2
Cec03g1299 . 20 119 HSF AT4G11660 68.0 1.0e-38 157.9
Cec10g0148 . 33 126 HSF AT4G11660 69.1 1.7e-36 150.6
Cec04g0460 . 7 214 HSF AT2G41690 51.0 2.5e-49 192.6
Cec10g1593 . 14 222 HSF AT2G41690 55.3 1.0e-47 187.2
Cec08g1659 . 9 373 HSF AT1G46264 52.2 5.0e-88 321.6
Cec05g2220 . 1 239 HSF AT1G46264 63.8 6.3e-83 304.7
Cec10g0148 . 33 138 HSF AT1G46264 73.6 3.5e-41 166.0
Cec02g1911 . 5 115 HSF AT1G46264 63.1 5.2e-37 152.1
Cec10g1593 . 21 118 HSF AT1G46264 69.4 5.2e-37 152.1
Cec05g0572 . 37 237 HSF AT4G17750 59.6 2.3e-62 236.9
Cec09g0708 . 76 317 HSF AT4G17750 51.0 1.8e-59 227.3
Cec08g1768 . 42 242 HSF AT4G17750 54.6 5.9e-58 222.2
Cec03g0671 . 13 158 HSF AT4G17750 56.1 3.8e-41 166.4
Cec01g0295 . 352 490 HSF AT4G17750 56.8 2.7e-39 160.2
Cec08g1659 . 14 118 HSF AT4G17750 69.5 3.6e-39 159.8
Cec05g2220 . 20 118 HSF AT4G17750 69.7 2.3e-38 157.1
Cec05g0572 . 38 242 HSF AT5G16820 57.0 3.6e-60 229.6
Cec07g0080 . 41 262 HSF AT5G16820 52.6 2.3e-59 226.9
Cec09g0708 . 77 289 HSF AT5G16820 54.0 5.3e-56 215.7
Cec08g1768 . 43 253 HSF AT5G16820 51.1 4.5e-55 212.6
Cec04g2104 . 62 244 HSF AT5G16820 50.3 1.5e-42 171.0
Cec03g0671 . 9 150 HSF AT5G16820 57.2 4.4e-42 169.5
Cec06g0919 . 10 176 HSF AT5G16820 51.6 5.7e-42 169.1
Cec02g1911 . 13 188 HSF AT5G16820 50.3 3.7e-41 166.4
Cec10g0148 . 13 515 HSF AT1G32330 53.0 1.1e-120 430.6
Cec05g0572 . 26 227 HSF AT1G32330 54.0 1.0e-59 228.0
Cec09g0708 . 65 285 HSF AT1G32330 51.8 9.7e-58 221.5
Cec07g0080 . 27 226 HSF AT1G32330 52.6 6.3e-57 218.8
Cec08g1768 . 31 223 HSF AT1G32330 54.1 1.0e-54 211.5
Cec08g1659 . 20 117 HSF AT1G32330 72.4 2.9e-38 156.8
Cec05g2220 . 22 117 HSF AT1G32330 71.9 1.1e-37 154.8
Cec07g0080 . 41 262 HSF AT3G02990 53.1 2.8e-62 236.5
Cec05g0572 . 38 241 HSF AT3G02990 57.6 1.8e-61 233.8
Cec09g0708 . 77 300 HSF AT3G02990 52.4 1.9e-58 223.8
Cec08g1768 . 43 242 HSF AT3G02990 51.7 5.7e-55 212.2
Cec06g0919 . 10 172 HSF AT3G02990 50.3 3.6e-41 166.4
Cec03g0671 . 9 158 HSF AT3G02990 54.3 1.4e-40 164.5
Cec05g0572 . 25 287 HSF AT2G26150 52.3 1.5e-68 256.9
Cec09g0708 . 65 284 HSF AT2G26150 54.3 5.0e-64 241.9
Cec10g0148 . 8 243 HSF AT2G26150 55.7 3.0e-61 232.6
Cec03g0671 . 5 156 HSF AT2G26150 51.3 2.3e-40 163.3
Cec02g1911 . 2 189 HSF AT4G18880 52.1 5.6e-51 198.7
Cec05g0355 . 6 462 HSF AT4G13980 52.6 8.1e-118 421.0
Cec02g1911 . 4 183 HSF AT4G13980 50.6 1.7e-43 174.1
Cec05g0572 . 26 218 HSF AT5G43840 54.4 1.6e-55 213.4
Cec08g1768 . 31 234 HSF AT5G43840 50.5 1.5e-45 180.3
Cec05g0572 . 26 354 HSF AT3G22830 50.1 1.8e-89 326.6
Cec07g0080 . 16 350 HSF AT3G22830 51.2 6.4e-87 318.2
Cec08g1768 . 31 253 HSF AT3G22830 54.1 2.0e-64 243.4
Cec10g0148 . 29 242 HSF AT3G22830 58.9 1.1e-62 237.7
Cec03g0671 . 13 158 HSF AT3G22830 52.0 1.9e-38 157.1
Cec09g0708 . 64 375 HSF AT3G51910 51.4 8.7e-72 267.3
Cec07g0080 . 26 322 HSF AT3G51910 52.2 1.1e-69 260.4
Cec08g1768 . 31 223 HSF AT3G51910 56.0 4.8e-54 208.4
Cec08g1768 . 31 230 HSF AT3G63350 52.5 3.4e-50 195.7
Cec02g1911 . 5 140 HSF AT3G63350 56.6 3.8e-38 155.6
Cec11g0180 . 32 261 HSF AT5G54070 50.2 3.2e-52 202.6
Cec04g1370 . 46 334 HSF AT4G36990 52.4 1.0e-70 263.8
Cec05g0957 . 589 696 HSF AT4G36990 64.8 3.9e-38 155.6
Cec08g1659 . 17 115 HSF AT5G62020 67.7 1.8e-38 156.8
Cec01g0295 . 391 711 HSF AT4G11660 51.8 2.1e-79 293.1
Cec08g1659 . 16 121 HSF AT4G11660 71.7 3.7e-44 176.0
Cec04g1370 . 46 148 HSF AT4G11660 72.8 1.7e-41 167.2
Cec03g1299 . 20 119 HSF AT4G11660 68.0 1.0e-38 157.9
Cec10g0148 . 33 126 HSF AT4G11660 69.1 1.7e-36 150.6
Cec04g0460 . 7 214 HSF AT2G41690 51.0 2.5e-49 192.6
Cec10g1593 . 14 222 HSF AT2G41690 55.3 1.0e-47 187.2
Cec08g1659 . 9 373 HSF AT1G46264 52.2 5.0e-88 321.6
Cec05g2220 . 1 239 HSF AT1G46264 63.8 6.3e-83 304.7
Cec10g0148 . 33 138 HSF AT1G46264 73.6 3.5e-41 166.0
Cec02g1911 . 5 115 HSF AT1G46264 63.1 5.2e-37 152.1
Cec10g1593 . 21 118 HSF AT1G46264 69.4 5.2e-37 152.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002952 2 3 1 1 0 1 1 1 1 2 1 1 1 3 2 1 1 2 1 1 2 3 2 2 2 2 3 4 3 1 51
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29095 PF00447 HSF_DNA-bind 7.30E-31 CL0123 Cec TF