Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g1917 ATGATATTTAGGGCCACAAGACATCACTCATTCGGCCTTCTACGTTTCAGACTTCAGAGAAACCGAAACCCCGCTCCCTCTCCATTTTCTGATCAAAACCACTCTCGCCGGACCGCTCTCTGTCTCTCCGCCGTCCCTCGCGGTCGTTTTCCTCTAGACCTTCTGGTGCTAATATTTGATTTGAAGTCGCGGACCTTCAGGCACATATCACTTGATGTTCTAGGAATGAGCAAATCACAAGGGCCTTCATCACTCAAAAGGAAAAGACCAGACTCAGCTCATGGCTCAGGGGGAGCTCTCATTGAGCATGAAAAAGTGCTCCATGATCTGATTTGCAGCAAGCAAAGCATGGGGATTTGGATTGGAGACATTAAAAGAGAAACTAAATATTCTGACAGTGTGGTAACAAAATCACTCAAGTCCCTTCAAGCTAGAGGCCTGGTTAAACTAGTTGAGCACTATCAAAACAAAGGGAAGAAATTCTACCTGTCAAAAGATTTCGAACCATCGAAAGAATTGACTGGCGGTAATTGGTATAGCGACGGGAAGCTCGACCAAGAATACATCAATACTCTTAAAGGGTTCTGTGCTAGAATGATACAGAAGTTGAAGGTGGCCACAATTGAAGGGATTGTAGATTCTTTCAAAAAGAGTGGAGCGTCCAAAGTAGACTTGTCTAGGGAGCAAATTGAAGAGATTGTAAATGCTTTGGTGTTGGACAATGAAGTTATGGAGGTAAAGAGCACTGGTTCAGGGGAGTTTGATTTTATTCCTGTTGGGAAGATTTGTTATAAGTGCTATGCTAAAGGAGGTGTTAAAGGGGAGCCCAAAACAGGAGCCATGGCTTCTATTCCTTGTGGAGTTTGTCCAAGGATTAGTCATTGTACCCCAGACGGCATCATTTCCCCTAGGACTTGTGTGTATTACACCAAGTGGTTGAAGGGGAGTGCCTTCCTTTGCTCTCCCTCAGTTCATAGTCCTCTTATTCCTCGGGTGAAGTTTACAGCCGAGGAGCTCCGACGGATTATGGACTTTAAGCATAACATTCGTAATATGTCTGTTATTGCTCACGTCGATCATGGGAAGTCAACACTTACGGACTCTCTTGTGGCTGCTGCGGGTATCATTGCACAAGAAGTTGCCGGTGATGTACGAATGACAGACACTCGCCAAGATGAGGCAGAGCGTGGTATCACCATTAAATCTACTGGAATCTCCCTCTACTATGAGATGTCCGATGAATCCTTGAAAAGTTACAAGGGAGAGAGACAGGGAAATGAATATCTTATCAATCTTATTGATTCACCTGGGCACGTTGACTTCTCATCTGAGGTTACAGCTGCTTTGCGTATTACCGATGGTGCCCTTGTTGTGGTGGATTGTGTCGAAGGTGTTTGTGTCCAAACAGAGACCGTGCTCCGTCAGGCTTTGGGAGAGAGGATTAGACCTGTCTTGACTGTTAACAAGATGGACAGGTGCTTCCTTGAACTCCAAGTGGATGGAGAAGAGGCTTACCAAACATTTCAGAGGGTGATAGAGAATGCCAATGTGATTATGGCCACATACGAGGATCCACTTCTTGGGGATGTTCAAGTGTACCCCGAGAAAGGAACAGTCGCCTTCTCTGCTGGTCTGCACGGTTGGGCGTTTACCCTGACTAACTTTGCGAAGATGTATGCCTCCAAGTTTGGAGTAGACGAGTCAAAGATGATGGAGAGACTTTGGGGTGAGAACTTCTTTGATCCTGCAACCAAGAAGTGGACCAGCAAGAACACTGGCTCTCCAACATGCAAGCGTGG 1799 45.86 MIFRATRHHSFGLLRFRLQRNRNPAPSPFSDQNHSRRTALCLSAVPRGRFPLDLLVLIFDLKSRTFRHISLDVLGMSKSQGPSSLKRKRPDSAHGSGGALIEHEKVLHDLICSKQSMGIWIGDIKRETKYSDSVVTKSLKSLQARGLVKLVEHYQNKGKKFYLSKDFEPSKELTGGNWYSDGKLDQEYINTLKGFCARMIQKLKVATIEGIVDSFKKSGASKVDLSREQIEEIVNALVLDNEVMEVKSTGSGEFDFIPVGKICYKCYAKGGVKGEPKTGAMASIPCGVCPRISHCTPDGIISPRTCVYYTKWLKGSAFLCSPSVHSPLIPRVKFTAEELRRIMDFKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRQDEAERGITIKSTGISLYYEMSDESLKSYKGERQGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVDCVEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFQRVIENANVIMATYEDPLLGDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTSKNTGSPTCKR 599
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 36988332 36998628 + CePI673135_02g019170.1 Cec02g1917 196970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g1917 599 PANTHER TRANSLATION ELONGATION FACTOR-RELATED 333 594 - GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0005829(PANTHER)|GO:0006414(PANTHER)|GO:0043022(PANTHER)|GO:1990904(PANTHER)
Cec02g1917 599 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 347 583 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cec02g1917 599 Gene3D - 102 165 IPR036388 -
Cec02g1917 599 Pfam Elongation factor Tu GTP binding domain 348 551 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cec02g1917 599 NCBIfam small GTP-binding protein domain 350 506 IPR005225 GO:0005525(InterPro)
Cec02g1917 599 CDD EF2 350 560 - -
Cec02g1917 599 MobiDBLite consensus disorder prediction 78 97 - -
Cec02g1917 599 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 334 591 IPR027417 -
Cec02g1917 599 Pfam RNA polymerase Rpc34 subunit 102 202 IPR007832 GO:0005666(InterPro)|GO:0006383(InterPro)
Cec02g1917 599 Pfam RNA polymerase Rpc34 subunit 205 313 IPR007832 GO:0005666(InterPro)|GO:0006383(InterPro)
Cec02g1917 599 Gene3D - 333 567 IPR027417 -
Cec02g1917 599 PRINTS GTP-binding elongation factor signature 447 458 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cec02g1917 599 PRINTS GTP-binding elongation factor signature 351 364 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cec02g1917 599 PRINTS GTP-binding elongation factor signature 395 403 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cec02g1917 599 PRINTS GTP-binding elongation factor signature 483 492 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cec02g1917 599 PRINTS GTP-binding elongation factor signature 431 441 IPR000795 GO:0003924(InterPro)|GO:0005525(InterPro)
Cec02g1917 599 FunFam Translation elongation factor 2 333 567 - -
Cec02g1917 599 SUPERFAMILY Winged helix DNA-binding domain 103 164 IPR036390 -
Cec02g1917 599 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 388 403 IPR031157 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1917 Cec-Chr2:36988332 Cec02g1933 Cec-Chr2:37194833 1.40E-143 dispersed
Cec02g1917 Cec-Chr2:36988332 Cec02g1918 Cec-Chr2:37007107 1.40E-154 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g1917 K03234 - csv:101208886 523.472