Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g1940 ATGAAGGAGATCAGTGGAAGAAAACAAGGCACGTCTCTTTCACCATGTGCAGCTTGTAAGCTTCTCCGTCGTCGATGTGCTCAAGATTGTGTTTTCGCCCCGTATTTCCCCGCCGACGAACCTCATAAATTTGCTAGCGTCCATAAGGTCTTCGGAGCTAGTAATGTTAACAAGATGTTGCAGGAGCTACCAGAGCAACAACGAAGCGATGCAGTTAGTTCGATGGTGTACGAGGCAAACGCGAGGGTGCGAGATCCAGTGTACGGTTGCGTTGGAGCCATATCGTCGCTACAACAACAAATCGATCTCTTGCAAACACAACTAGCAATAGCGCAAGCGGAGGTGGTTCACATGAGGATGCGCCAATTCCCATCGTCCTCCTGCAACCCTACTGCGGGCCACTCGCCGGAAACCACCTCACCCTCCGGCAAGATGAACATTCCGGCGCCAAACAAGTCCTATTTTTCCATGGACATGGTTGACCACGACAACATGGGGGAGTCCTTGTGGTCGTCGTGCTAG 522 51.72 MKEISGRKQGTSLSPCAACKLLRRRCAQDCVFAPYFPADEPHKFASVHKVFGASNVNKMLQELPEQQRSDAVSSMVYEANARVRDPVYGCVGAISSLQQQIDLLQTQLAIAQAEVVHMRMRQFPSSSCNPTAGHSPETTSPSGKMNIPAPNKSYFSMDMVDHDNMGESLWSSC 173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37289655 37291823 + CePI673135_02g019400.1 Cec02g1940 196993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g1940 173 Coils Coil 94 114 - -
Cec02g1940 173 ProSiteProfiles LOB domain profile. 14 115 IPR004883 -
Cec02g1940 173 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 14 134 - -
Cec02g1940 173 Pfam Lateral organ boundaries (LOB) domain 15 112 IPR004883 -
Cec02g1940 173 MobiDBLite consensus disorder prediction 124 148 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1940 Cec-Chr2:37289655 Cec07g0514 Cec-Chr7:5931469 2.60E-45 dispersed
Cec01g0916 Cec-Chr1:10961322 Cec02g1940 Cec-Chr2:37289655 2.70E-58 transposed
Cec02g1035 Cec-Chr2:17435243 Cec02g1940 Cec-Chr2:37289655 4.70E-18 transposed
Cec02g1466 Cec-Chr2:32108398 Cec02g1940 Cec-Chr2:37289655 1.80E-33 transposed
Cec09g2144 Cec-Chr9:38382852 Cec02g1940 Cec-Chr2:37289655 4.90E-28 transposed
Cec02g2200 Cec-Chr2:39452897 Cec02g1940 Cec-Chr2:37289655 2.30E-34 transposed
Cec02g1940 Cec-Chr2:37289655 Cec09g2359 Cec-Chr9:40416421 6.80E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29101 PF03195 LOB 1.00E-43 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g1940 - - - 0.0