Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g1954 ATGCAGATCTTTGTCAAAACCCTAACTGGGAAGACGATCACGCTCGAAGTCGAGAGCAGTGATACCATCGATAATGTCAAAGCCAAGATCCAGGACAAGGAGGGTATTCCTCCTGACCAGCAGAGATTAATTTTTGCTGGTAAGCAATTGGAAGATGGTCGAACGCTTGCCGATTATAACATCCAAAAGGAATCAACCCTTCACTTGGTCTTGAGGCTTAGGGGAGGTACTATGATTAAGGTCAAGACTCTGACCGGGAAGGAAATTGAGATTGACATTGAGCCAACTGATACAATTGATCGTATCAAGGAGCGGGTTGAGGAAAAAGAGGGTATTCCCCCTGTACAGCAAAGGCTCATTTATGCCGGTAAACAGCTTGGAGATGACAAAACGGCTAAAGACTACAACATTGAGGGTGGTTCTGTTCTCCATCTAGTGCTTGCCCTGAGGGGTGGTTATCTGTAA 465 45.59 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGTMIKVKTLTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLGDDKTAKDYNIEGGSVLHLVLALRGGYL 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37398155 37400961 + CePI673135_02g019540.1 Cec02g1954 197007
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g1954 154 FunFam Polyubiquitin 3 1 76 - -
Cec02g1954 154 SUPERFAMILY Ubiquitin-like 78 152 IPR029071 -
Cec02g1954 154 ProSitePatterns Ubiquitin domain signature. 27 52 IPR019954 -
Cec02g1954 154 PRINTS Ubiquitin signature 53 74 IPR019956 -
Cec02g1954 154 PRINTS Ubiquitin signature 11 31 IPR019956 -
Cec02g1954 154 PRINTS Ubiquitin signature 32 52 IPR019956 -
Cec02g1954 154 SMART ubq_7 1 72 IPR000626 GO:0005515(InterPro)
Cec02g1954 154 SMART ubq_7 77 148 IPR000626 GO:0005515(InterPro)
Cec02g1954 154 Pfam Ubiquitin family 79 149 IPR000626 GO:0005515(InterPro)
Cec02g1954 154 Pfam Ubiquitin family 3 74 IPR000626 GO:0005515(InterPro)
Cec02g1954 154 ProSitePatterns Ubiquitin domain signature. 103 128 IPR019954 -
Cec02g1954 154 Gene3D - 78 153 - -
Cec02g1954 154 Gene3D - 1 77 - -
Cec02g1954 154 ProSiteProfiles Ubiquitin domain profile. 1 76 IPR000626 GO:0005515(InterPro)
Cec02g1954 154 CDD Ubl_ubiquitin 1 76 - -
Cec02g1954 154 PANTHER UBIQUITIN 1 76 IPR050158 GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016567(PANTHER)|GO:0019941(PANTHER)|GO:0031386(PANTHER)|GO:0031625(PANTHER)
Cec02g1954 154 SUPERFAMILY Ubiquitin-like 1 76 IPR029071 -
Cec02g1954 154 FunFam NEDD8 protein 77 154 - -
Cec02g1954 154 CDD Ubl_NEDD8 79 152 IPR038738 -
Cec02g1954 154 ProSiteProfiles Ubiquitin domain profile. 77 152 IPR000626 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1954 Cec-Chr2:37398155 Cec10g0548 Cec-Chr10:6647517 1.00E-64 dispersed
Cec02g1954 Cec-Chr2:37398155 Cec03g0477 Cec-Chr3:5079326 4.50E-65 transposed
Cec02g1954 Cec-Chr2:37398155 Cec04g1926 Cec-Chr4:37634088 4.50E-65 transposed
Cec02g1954 Cec-Chr2:37398155 Cec05g1643 Cec-Chr5:26678391 4.50E-65 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g1954 K12158 - csv:101214716 293.893