Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g1968 ATGACTATGACGGTCGCTGCAAGAGCAATCGCAGCAGCTCGATCAATGGCGCGATCGAGCAGTTTCCCTCTAAAATCTCCATCTTCTTATGTGTTCGCTGCGCAGAAATCTCACTCCCACACTCTTCTCATTCGTCAGATGAGCTCGGAGGCGCAGAGCATCGCTACTCGTCTTCACAGTTCTGGATTGTTACGAAGCCAAGGCCTCATTGGAGGGAAGTGGATTGATGCTTATGATGGGAAGACCATTGAGGTTCACAATCCAGCTAATGGTGAAGTTATAACCAATGTCCCGCTCATGGGCAAAAGGGAGACCGATGATGCTATTTCTTCAGCTTATGATGCTTTTAAGTCTTGGAGCAAGCTCACTGCAGCTGATCGGAGTAATCGCTTACGCAAATGGTATGAGCTCCTAATTGCCCACAAAGAAGAGATTGGACAACTGATAACCTTAGAGCAAGGCAAACCCTTAAAGGAAGCTGTGGGTGAGACTAACTATGGAGCCAGCTTTATTGAGTTCTATTCCGAGGAAGCAAAACGGATATATGGTGACATAATTTCACCAACTATAGCCGATCGTCGAATTTTGGTCTTGAAGCAGCCAGTTGGAGTTGTTGGTGTTGTTACCCCTTGGAACTTTCCGTTGGCTATGATTACGCGGAAGGTTGGACCTGCTCTTGCATGTGGTTGTACGGTGGTCATAAAACCCTCTGAGCTTACCCCCTTGACAGCTTTAGCAGCAGCCAAGCTCTCACTTCAAGCTGGAATTCCCCCAGGTGTTGTGAATGTGGTTATGGGAGATGCTCCTGCTATTGGCGATGCTATACTCGCAAGTTCTCAGGTAAGAAAGATCACGTTTACTGGCTCAACAGCAGTTGGAAAAAAGTTGATGGCAGGAGCTGCTGGAACTGTTAAAAGGGTGTCCTTTGAACTTGGTGGTAATGCCCCTTGCATAGTATTTGATGACGCAGATGTGGATGTTGCAGTAAAAGGAGCTGATTATGGCTTTGAAACAATCCTGCTCAACATGATTAATGTAATTAGCACTTACCACGATGCATCAATATCTATTTGTAAGTGCATACTACCTAGGGATGTGGGTCTATTCAACCACGACTCTTTCCTGCAATTGCAGCAAAGTTCCGAAATAGTGGACAGACTTGTGTTTGTGCCAATAGAATTCTTGTTCAAGAAGGTATTAACAGATGTATACTTCAGTTCTGAAGGATGCTTCGTTTGCTCGTTTAAAAGATGGCTTACTGATATTGGAATCTACGAGAAATTTACAAATGCTTTCTCAAAAGCTGTGCAAAATCTGCAAGTTGGTGATGGGTTTGGTGAAGGTGTAGCTCAGGGTCCTTTAATTAATGAAGCCGCCGTGCAGAAGGTTGAGAAATTTCTTCAAGATGCTACTACAAAGGGAGCAAAAGTTCTTCTTGGTGGTAAAAGACACAGCCTTGGGATGACATTTTTTGAGCCTACAGTTATTGCTGACGTGAATAGTGACATGCTTGTATCCAGGGAGGAAGTATTTGGTCCCGTGGCACCCTTACTGCAATTCAGAACAGAGGAGGAAGCAATTGCTCTCGCTAATGACACCAATGCAGGATTAGCTGCTTACATATTCACAAATAATATTCAACGTTCATGGAGAGTGACTGAAGCTCTTGAATACGGAATGGTTGGTGTTAATGAAGGCTTAATTTCTACAGAGGTGGCTCCATTTGGTGGCGTTAAGGAGTCAGGCCTTGGAAGGGAAGGGTCGAAATATGGGATGGACGAGTATCTTGAGCTGAAATATGTTTGCTTGGGGAATATGGACCGCCATTGA 1830 44.64 MTMTVAARAIAAARSMARSSSFPLKSPSSYVFAAQKSHSHTLLIRQMSSEAQSIATRLHSSGLLRSQGLIGGKWIDAYDGKTIEVHNPANGEVITNVPLMGKRETDDAISSAYDAFKSWSKLTAADRSNRLRKWYELLIAHKEEIGQLITLEQGKPLKEAVGETNYGASFIEFYSEEAKRIYGDIISPTIADRRILVLKQPVGVVGVVTPWNFPLAMITRKVGPALACGCTVVIKPSELTPLTALAAAKLSLQAGIPPGVVNVVMGDAPAIGDAILASSQVRKITFTGSTAVGKKLMAGAAGTVKRVSFELGGNAPCIVFDDADVDVAVKGADYGFETILLNMINVISTYHDASISICKCILPRDVGLFNHDSFLQLQQSSEIVDRLVFVPIEFLFKKVLTDVYFSSEGCFVCSFKRWLTDIGIYEKFTNAFSKAVQNLQVGDGFGEGVAQGPLINEAAVQKVEKFLQDATTKGAKVLLGGKRHSLGMTFFEPTVIADVNSDMLVSREEVFGPVAPLLQFRTEEEAIALANDTNAGLAAYIFTNNIQRSWRVTEALEYGMVGVNEGLISTEVAPFGGVKESGLGREGSKYGMDEYLELKYVCLGNMDRH 609
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37516053 37527032 + CePI673135_02g019680.1 Cec02g1968 197021

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g1968 609 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 57 349 IPR016162 GO:0016491(InterPro)
Cec02g1968 609 Pfam Aldehyde dehydrogenase family 74 332 IPR015590 GO:0016491(InterPro)
Cec02g1968 609 Pfam Aldehyde dehydrogenase family 405 601 IPR015590 GO:0016491(InterPro)
Cec02g1968 609 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 383 607 IPR016163 GO:0016620(InterPro)
Cec02g1968 609 FunFam Succinate-semialdehyde dehydrogenase I 80 337 - -
Cec02g1968 609 FunFam Succinate-semialdehyde dehydrogenase I 391 570 - -
Cec02g1968 609 FunFam Aldehyde dehydrogenase, putative 573 599 - -
Cec02g1968 609 SUPERFAMILY ALDH-like 44 334 IPR016161 GO:0016491(InterPro)
Cec02g1968 609 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 309 316 IPR029510 GO:0016491(InterPro)
Cec02g1968 609 CDD ALDH_F5_SSADH_GabD 85 603 - -
Cec02g1968 609 PANTHER SUCCINATE-SEMIALDEHYDE DEHYDROGENASE, MITOCHONDRIAL 58 606 IPR050740 GO:0004777(PANTHER)|GO:0006807(PANTHER)|GO:0009450(PANTHER)
Cec02g1968 609 SUPERFAMILY ALDH-like 404 607 IPR016161 GO:0016491(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g1968 K17761 - - csv:101217352 555.829
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1968 Cec-Chr2:37516053 Cec06g1889 Cec-Chr6:32192958 6.70E-80 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1169 . . . . . . . . . . . . . . . . Cpe16g00704 . . . . . . . Cla02g01832 Cam02g1941 Cec02g1968 Cco02g2007 Clacu02g1921 Cmu02g1870 Cre02g2183 . . . . . . . Cme11g01643 . . . . . . . . Sed05g3313 . . . . . . . Cpe05g01029 Bhi10g00929 Tan05g0579 Cmetu11g2423 . Hepe08g0653 . . . . . . . . . . Csa06g01146 Chy11g01046 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec06g1171 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 69.8 6.1e-212 733.8
Cec02g1743 . 51 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 3.9e-158 555.1
Cec06g1889 . 71 555 Aldehyde Dehydrogenase Gene Family AT3G24503 54.3 3.4e-154 542.0
Cec06g1889 . 1 555 Aldehyde Dehydrogenase Gene Family AT3G48000 76.0 3.5e-250 860.9
Cec02g1743 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 75.3 6.2e-247 850.1
Cec06g1171 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 54.6 1.5e-160 563.1
Cec02g1743 . 1 385 Aldehyde Dehydrogenase Gene Family AT1G23800 76.9 3.6e-170 594.7
Cec06g1889 . 50 399 Aldehyde Dehydrogenase Gene Family AT1G23800 78.0 2.7e-165 578.6
Cec06g1171 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 54.7 3.8e-103 372.1
Cec11g1632 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.8 9.1e-182 633.6
Cec11g1633 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.2 4.0e-177 618.2
Cec11g1632 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 71.3 2.6e-176 615.1
Cec11g1633 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 71.5 3.8e-175 611.3
Cec02g2438 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 50.2 6.2e-117 417.9
Cec07g0979 . 1 477 Aldehyde Dehydrogenase Gene Family AT4G36250 63.1 5.2e-184 641.0
Cec02g2438 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 55.5 1.9e-157 552.7
Cec02g1968 . 37 609 Aldehyde Dehydrogenase Gene Family AT1G79440 65.7 6.8e-214 740.3
Cec09g1759 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 82.7 1.3e-240 829.3
Cec04g1524 . 249 683 Aldehyde Dehydrogenase Gene Family AT2G14170 68.0 1.5e-180 629.8
Cec06g1867 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.4 2.5e-250 861.3
Cec06g1867 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 81.3 3.5e-252 867.5
Cec02g1787 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.8 9.2e-269 922.5
Cec01g1535 . 21 555 Aldehyde Dehydrogenase Gene Family AT5G62530 78.0 1.7e-260 895.2
Cec06g0463 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 76.1 3.5e-275 944.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004697 3 1 1 3 3 1 2 1 1 1 1 1 2 1 1 1 1 1 2 1 1 1 2 1 1 1 1 1 1 3 42