Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g1969 ATGTTCCATGCCACCAAGAAACCTTCCTCTATGACTTCTCATGACAGGCCAATGTGTGTCCAAGGCGATTCCGGACTCGTCCTCACCACCGACCCCAAACCCCGCCTCCGTTGGACCGTCGAGCTCCACGAGCGCTTCGTCGACGCCGTCACTCAACTCGGAGGCCCCGATAAAGCCACCCCGAAAACCATCATGAGAGTTATGGGCGTCAAGGGTCTCACTCTCTACCATCTCAAGAGCCACCTCCAGAAGTTCAGACTTGGAAAGCAACCCCACAAGGAATTCAATGATCAATCAATAAAGGATGGTATAAGAGCTTCAGCCTTGGAACTTCAAAGAAACAGTGGATCTTCTTCCAGCTTAATGGACCGTAATATGAACGAAATGCAAATGGAGGTCCAGAGAAGGCTGCATGAACAAATTGAGGTACAAAGACACCTTCAGTTGAGAATTGAGGCTCAAGGCAAGTACATGCAAAGCATATTAGAGAAAGCTTGCCAAACCCTCGCCGGTGAAAACATGGCCGCCGCCAGCGCCGCCGCTGGCCCTTTCAAAACCACTTCCAACAATATGGGAACAACCACCAATCTTGTCTCAGAGGCTGCCATCAAAGACTTCATTTCACCTCCTCCACCTCACCACACCTTCCCTCCTTTTCAAGACATGAACAACCTATTTAACTCCGAACAGCCGCCGCCTCCACCGCCTCTCATCGACTGCCTCAAGAAGCCGAGCACCTTCATCTCAGGCGCAGGTAAGACCCCCATTTTCTGGCCGGACGATCTCCGGCTCCAAGACTTAGGAACCCCTTCAGCCACCTTAGCACCGCCACCTCCTTCCATCGGCGGCCCAGCCGAGTTGGATCCCTTACAATTGGAAATGTATGAATCCAAACCGCCACCGCCACCACCACTACTCGCTGCTGGCAACAACGCAACAAATGAGAAGAAGTTTGACATGACGTTAAAGCTCGAGAGGTCGTCCCCACCGCGGTCGGGGCATTCCGACGAAAGGGTGAATAATAATGGTATGCCTAACAATAGCAACCCTACAATGTCACAGCCACAGGGAAGAAATTCAACATTTGGTTAA 1092 51.56 MFHATKKPSSMTSHDRPMCVQGDSGLVLTTDPKPRLRWTVELHERFVDAVTQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGKQPHKEFNDQSIKDGIRASALELQRNSGSSSSLMDRNMNEMQMEVQRRLHEQIEVQRHLQLRIEAQGKYMQSILEKACQTLAGENMAAASAAAGPFKTTSNNMGTTTNLVSEAAIKDFISPPPPHHTFPPFQDMNNLFNSEQPPPPPPLIDCLKKPSTFISGAGKTPIFWPDDLRLQDLGTPSATLAPPPPSIGGPAELDPLQLEMYESKPPPPPPLLAAGNNATNEKKFDMTLKLERSSPPRSGHSDERVNNNGMPNNSNPTMSQPQGRNSTFG 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37533770 37537700 + CePI673135_02g019690.1 Cec02g1969 197022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g1969 363 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 90 IPR017930 -
Cec02g1969 363 MobiDBLite consensus disorder prediction 1 26 - -
Cec02g1969 363 MobiDBLite consensus disorder prediction 262 363 - -
Cec02g1969 363 NCBIfam myb-like DNA-binding domain, SHAQKYF class 33 88 IPR006447 GO:0003677(InterPro)
Cec02g1969 363 MobiDBLite consensus disorder prediction 334 363 - -
Cec02g1969 363 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Cec02g1969 363 Gene3D - 32 90 - -
Cec02g1969 363 Pfam Myb-like DNA-binding domain 35 85 IPR001005 -
Cec02g1969 363 MobiDBLite consensus disorder prediction 318 333 - -
Cec02g1969 363 Pfam MYB-CC type transfactor, LHEQLE motif 129 168 IPR025756 -
Cec02g1969 363 FunFam Myb family transcription factor 32 90 - -
Cec02g1969 363 MobiDBLite consensus disorder prediction 1 17 - -
Cec02g1969 363 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 8 201 IPR046955 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1969 Cec-Chr2:37533770 Cec04g1815 Cec-Chr4:36909216 8.40E-30 dispersed
Cec03g0973 Cec-Chr3:16736104 Cec02g1969 Cec-Chr2:37533770 7.00E-18 transposed
Cec04g0314 Cec-Chr4:12221984 Cec02g1969 Cec-Chr2:37533770 7.30E-19 transposed
Cec05g0383 Cec-Chr5:3124482 Cec02g1969 Cec-Chr2:37533770 7.80E-40 transposed
Cec07g0164 Cec-Chr7:1725378 Cec02g1969 Cec-Chr2:37533770 2.10E-21 transposed
Cec07g0267 Cec-Chr7:2622870 Cec02g1969 Cec-Chr2:37533770 2.20E-32 transposed
Cec10g1272 Cec-Chr10:26867999 Cec02g1969 Cec-Chr2:37533770 7.80E-15 transposed
Cec10g1341 Cec-Chr10:27656736 Cec02g1969 Cec-Chr2:37533770 9.30E-35 transposed
Cec10g1707 Cec-Chr10:31556897 Cec02g1969 Cec-Chr2:37533770 4.10E-25 transposed
Cec11g0998 Cec-Chr11:17101431 Cec02g1969 Cec-Chr2:37533770 3.20E-26 transposed
Cec02g1969 Cec-Chr2:37533770 Cec09g2389 Cec-Chr9:40654358 8.30E-86 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29104 PF00249 Myb_DNA-binding 2.00E-06 CL0123 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g1969 - - - 0.0