Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g1973 ATGAAGATCAGACATGTAGTCGCGTCGATGGTGGTAAGGCAAAATCACAATGGTTTGAAAAACGGTTTGAGAGAGAAATTGGAGATCCTCCCTATTTTCGTAGCCAAAACTGCAAAGTGGAGAAGATGGAAGGTCACCGCAGCCTTGAGAAGAGAAGGATTAGAATCGTCGAACCTCATCGTCGGAATTGATTTCACCAAAAGCAACGAGTGGACAGTTATGTCGAATCAAATCAATCGCACGGTAAAGAAAGTATCATTCAATAATCGGAGCTTGCACGCCGTTTCCGATTCTCCTAATCCCTACGAAAAGGCTCTGTCGATCATCGGGAAAACTCTGGCTCCCTTCGACGAAGACGGCTTAATTCCTTGCTTCGGTTTCGGCGACGCGACGACGCACGATCAAATGGTGTTCAGTTTTCACAATGATAATTCCCCGTGCCATGGATTTGAAGAAGTTCTTGATTGCTACAAGAAGATAATTCCGAATGTGCAACTTTCAGGGCCAAATTCTTACGGTCCTGTGGTTGAAGCTGCAATGGATATTGTGGAGAAGAGTGGGGGACAATTTCATATTCTGCTCATTGTTGCAGATGGACAGGTTACTCGAAGCTCCAATGTTGGCGATGGTGAATTGAGCGTTCAAGAGGAGAAAACAATCAAAGCAATTGTCGATGCGAGTGCATATCCTCTTTCGATTGTTCTTGTTGGAGTTGGAGATGGTCCTTGGGACGACATGAAGAAGTTCGACTACAAGATCCCAGCTCGGGATTTCGATAATTTTCAGGTGCAGTTTGTTAACTTCACTGAAATAATGTCGAAAAGCCACGGCACGCCTGAAAAAGAAGCAGCTTTTGCTTTAGCTGCACTTATGGAGGTTCCTTTCCAGTACAAAGCAGTAACAGAAATGGGTCTTATAGGACATGTGACAGGAAAAACAAAACGCATTGTGCCACGACCCCCTCCAACACGTTATACTCGTCCTACACGGCTCACTCCCATACCTAGCAACACCTCCTCAGCTTCTGCATCTGATGAACAGAATCAGGTCTGCCCCATTTGCTTGACCGCGGGAAAGGACTTGGCCTTTGGATGCGGCCACATGACCTGTAGGGAATGTGGATCAAGATTGTCCAATTGCCATATATGTCGCCAGCCTATCAGAAACCGAATAAGGCTATATACTGGGCGATCGGATTGCACCAAGGGGATAGTGAGATGA 1221 45.95 MKIRHVVASMVVRQNHNGLKNGLREKLEILPIFVAKTAKWRRWKVTAALRREGLESSNLIVGIDFTKSNEWTVMSNQINRTVKKVSFNNRSLHAVSDSPNPYEKALSIIGKTLAPFDEDGLIPCFGFGDATTHDQMVFSFHNDNSPCHGFEEVLDCYKKIIPNVQLSGPNSYGPVVEAAMDIVEKSGGQFHILLIVADGQVTRSSNVGDGELSVQEEKTIKAIVDASAYPLSIVLVGVGDGPWDDMKKFDYKIPARDFDNFQVQFVNFTEIMSKSHGTPEKEAAFALAALMEVPFQYKAVTEMGLIGHVTGKTKRIVPRPPPTRYTRPTRLTPIPSNTSSASASDEQNQVCPICLTAGKDLAFGCGHMTCRECGSRLSNCHICRQPIRNRIRLYTGRSDCTKGIVR 406
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37573750 37582475 - CePI673135_02g019730.1 Cec02g1973 197026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g1973 406 Pfam Zinc finger, C3HC4 type (RING finger) 348 389 - -
Cec02g1973 406 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 339 396 IPR013083 -
Cec02g1973 406 MobiDBLite consensus disorder prediction 316 344 - -
Cec02g1973 406 MobiDBLite consensus disorder prediction 329 344 - -
Cec02g1973 406 PANTHER COPINE FAMILY PROTEIN 1 44 394 IPR052079 GO:0004842(PANTHER)|GO:0005634(PANTHER)|GO:0016567(PANTHER)
Cec02g1973 406 ProSiteProfiles Zinc finger RING-type profile. 351 384 IPR001841 -
Cec02g1973 406 SUPERFAMILY vWA-like 58 249 IPR036465 -
Cec02g1973 406 Pfam Copine 91 306 IPR010734 -
Cec02g1973 406 SUPERFAMILY RING/U-box 342 388 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1973 Cec-Chr2:37573750 Cec09g2052 Cec-Chr9:37569979 3.50E-109 dispersed
Cec02g1973 Cec-Chr2:37573750 Cec05g2837 Cec-Chr5:38620541 6.80E-113 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g1973 K16280 - csv:101218058 596.275