Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g1982 ATGATACTACGCTCACAAGCGTCCTCTGTTTTCACAATTTCCTCTACAGTTACCGATAATCACACGTATAAGTATCACCGGCGGCAACTTCAGCTTCCTGTTTACGGCGGTGGAGCGAGTTTTCATGTTCGTGTTTCTAAAATTTTACTTCCGACGGCTGCGGTCACGGCCGGTTCCAGCGGCGGAAGTCTGACTAGAAGGAAATATAGGAATCGTTTTAACGACTTTAGGTCTTCTGCAAGTGCCTCCGATTTGTCCTCCTCGACTCAGCCGCCGGATATTCCAACTCCAGGTTCAGGTCCAGATAAGAATGAGGAAGCTCAGAGGCCTGGACCTGATCTGAAAATGCTTCTGAAGAGGTTTTGGAAAGTTGCCGCACCTTATTGGTCCTCGGACGATAAAGTGCAAGCTCGATGGCAGCTGGCTGCTGTCTTCGCTCTGTCCTTGGGCACCACCGGCATCAGCGTTGGCTTCAATTTCCTTGGCCGTGACTTCTACAACGCTCTTGCTAACAAGGACCAAGAACAGTTCACTAAGCAACTCCTCTACTACCTAGGTGCCTTCGCTGGAGGTATTCCGGTTTTTGTGTTGAGAGATTATGCAAAGGACATGCTTTCCCTTAGATGGAGGTCATGGATGACTAAACATTACATGGAGCGTTATCTAAAGGACCAGTCTTTCTATAAAATTCAGTCCCAGTCCATTATTGATAATCCAGACCAGCGGATCGTTGATGATCTCAGTTCTTTCACAGGGACAGCTCTTTCATTTTCTTTGGCACTTTTCAATTCTACCGTGGATTTAATTTCATTTAGTAACATCTTATATGGTATCTATCCACCGTTGTTTGTTGTTCTTCTTTTATATTCGATTGGAGGAACGGCAATCAGTGTTTTCCTCGGAAAGGGTTTGGTTAATTTGAACTTCTTGCAAGAAAAGAAAGAAGCAGATTTTCGCTATGGACTTGTCCGCATTCGTGAAAATGCTGAATCAATTGCTTTCTATGGTGGTGAAGAAAATGAGATGCAGCTTATTCTGCAACGGTTTAGAAGTGCTGTTGAGAATTTAACTAAATTACTAATAGCATCCAGAAATCTTGAGTTCTTTACCAATGGCTATCGCTACCTCATTCAGATTCTTCCAGCTGCTGTTGTTGCCCCAATGTACTTTTCAGGAAAAATTGAGTTTGGTGTTATTAATCAATCAGTATCTGCTTTCAATCACATCCTTGGGGATTTTTCCCTCATTGTATATCAGTTTCAGGCCATCAGTGCTTTTTCAGCAATTATTGATCGCCTAGGTGAATTTGATGACCTCTTGGATGGCAGTGCCCCTAATGTTCTCTCTAACACCTCAGAAGAGATACATCTCATGTACTCCCATGTGGAAAGTTCACCTCTACTAGAATCAAATGGGTCCATGGCCCTAGACAAACGCCTGAAATTATTGGAGATAGAGAATATGACTTTAGAGGCACCAAATGGAGCTACTTTGGTGAGAGACTTGGCGTTAATAGTTAAAGAAAAGGAGCATTTACTGGTAATGGGACCCAGTGGATGTGGCAAGACCTCATTGTTAAGAGTTTTGGCAGGTCTTTGGAATCTTGGAAAAGGAAAAATCACGTTTTATATAAAAGACTATCCGGAGCAGTTAGTTTCTCAAAATGGATTGCAAACCGAAGCACATACAGGAGTAGATGTATCCGAAGAAAATAGTAGACCACTCAACAAGAATTATCGAGGGATATTTTTCCTTCCTCAAAGACCATATATGGTTCTGGGTACACTACGTCAGCAGCTGCTTTATCCTACATGGGCTGAAGGTTCTGTCACATCGGCAGGTCATGCTGAACCAAATGTATTCCCTTCCTTTTTGACAGGTGCGTCGAATATCAACAAGGTTGGCGAAAATCCTGATAAGCCAACAACGGATGACCTAATCAAGGTTCTGGATAAAGTGGGTCTTGACTACCTATTGACTCGTTTCAGTAGTCTGGACACAACTTGTGAATGGTCTAGTGTTCTTTCTCTCGGTGAGCAACAACGTATTGCTTTTGCACGTCTATTACTTTCAAGGCCAAAGTTAGTCCTGCTGGATGAGTCTACTAGTGCGTTAGACGAAGCGAATGAGGCACGTTTATACAAGCAAATCGCAGGTGCTGGAATTACATATATTAGCATTGGCCATCGACGAACTTTACGTAATCACCATAACAGTATTTTGCACATATCCAAGTTGTCTGATGGCAATCAACGCAATTGGAACATTGAACCCATTATTTGGGATGATTTTCGTTTGCAGAGGAGAATCTATTCTATGAAGGATCTTAACGATGGGATATCGCCTCAAATGACGAGTAAAGAATATCAGAAAGTTACCAACGGTAATGTAGGTGAGGTTTCAACCATTTCGCTTGTCCTTTCCTTTAAGATTGAATTTGCTGCATAA 2448 42.48 MILRSQASSVFTISSTVTDNHTYKYHRRQLQLPVYGGGASFHVRVSKILLPTAAVTAGSSGGSLTRRKYRNRFNDFRSSASASDLSSSTQPPDIPTPGSGPDKNEEAQRPGPDLKMLLKRFWKVAAPYWSSDDKVQARWQLAAVFALSLGTTGISVGFNFLGRDFYNALANKDQEQFTKQLLYYLGAFAGGIPVFVLRDYAKDMLSLRWRSWMTKHYMERYLKDQSFYKIQSQSIIDNPDQRIVDDLSSFTGTALSFSLALFNSTVDLISFSNILYGIYPPLFVVLLLYSIGGTAISVFLGKGLVNLNFLQEKKEADFRYGLVRIRENAESIAFYGGEENEMQLILQRFRSAVENLTKLLIASRNLEFFTNGYRYLIQILPAAVVAPMYFSGKIEFGVINQSVSAFNHILGDFSLIVYQFQAISAFSAIIDRLGEFDDLLDGSAPNVLSNTSEEIHLMYSHVESSPLLESNGSMALDKRLKLLEIENMTLEAPNGATLVRDLALIVKEKEHLLVMGPSGCGKTSLLRVLAGLWNLGKGKITFYIKDYPEQLVSQNGLQTEAHTGVDVSEENSRPLNKNYRGIFFLPQRPYMVLGTLRQQLLYPTWAEGSVTSAGHAEPNVFPSFLTGASNINKVGENPDKPTTDDLIKVLDKVGLDYLLTRFSSLDTTCEWSSVLSLGEQQRIAFARLLLSRPKLVLLDESTSALDEANEARLYKQIAGAGITYISIGHRRTLRNHHNSILHISKLSDGNQRNWNIEPIIWDDFRLQRRIYSMKDLNDGISPQMTSKEYQKVTNGNVGEVSTISLVLSFKIEFAA 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 37673171 37680827 + CePI673135_02g019820.1 Cec02g1982 197035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g1982 815 CDD ABCD_peroxisomal_ALDP 483 751 - -
Cec02g1982 815 Gene3D ABC transporter type 1, transmembrane domain 102 439 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cec02g1982 815 MobiDBLite consensus disorder prediction 79 110 - -
Cec02g1982 815 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 483 773 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cec02g1982 815 MobiDBLite consensus disorder prediction 79 93 - -
Cec02g1982 815 Pfam ABC transporter 500 703 IPR003439 GO:0005524(InterPro)|GO:0016887(InterPro)
Cec02g1982 815 ProSitePatterns ABC transporters family signature. 675 689 IPR017871 GO:0005524(InterPro)|GO:0016887(InterPro)
Cec02g1982 815 Gene3D - 475 752 IPR027417 -
Cec02g1982 815 Pfam ABC transporter transmembrane region 2 134 390 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cec02g1982 815 SMART AAA_5 508 747 IPR003593 GO:0016887(InterPro)
Cec02g1982 815 SUPERFAMILY ABC transporter transmembrane region 119 436 IPR036640 GO:0005524(InterPro)|GO:0016020(InterPro)
Cec02g1982 815 PANTHER ATP-BINDING CASSETTE, SUB-FAMILY D MEMBER 84 757 IPR050835 -
Cec02g1982 815 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 142 425 IPR011527 GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:0140359(InterPro)
Cec02g1982 815 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 482 744 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1982 Cec-Chr2:37673171 Cec10g0887 Cec-Chr10:19520490 1.20E-44 dispersed
Cec02g1982 Cec-Chr2:37673171 Cec10g2019 Cec-Chr10:34968895 2.20E-09 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g1982 - - - 0.0