Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec02g2004 | ATGGAGAATAAGGCAAGTGTGATGGTTCAACGATATGAATTAGGGAGATTGCTTGGCCAAGGAACCTTCGCAAAGGTGTATTATGCGAGGAATACAGGAAACAATCAAAGTGTGGCCATTAAGGTGATTGATAAAGAAAAGATTACGAAGGCTTCGCTAATCGATCAGATTAAGCGTGAAATATCGATTATGAGACTAGTTAGACATCCTAATATTCTACGTCTATATGAGGTTATGGCCACCAAGACTAAGATCTACTTTGTTTTGGAATATGCTAAAGGTGGTGAGCTCTTTGACAAAGTTGCTAAAGGGAGGCTGCAGGAGGACATTGCTTGGAAATACTTTTATCAGTTAATCAATGCTGTTGATTTTTGTCACAGCAGGGGAGTGTATCACCGTGATATAAAGCCGGAGAACCTACTGCTTGATGAAAATGAGAATCTTAAGGTGTCTGATTTTGGTTTAAGTGCTTTAGCTGAGTCCAAGCGTCAAGACGGGTTGCTTCACACGACTTGTGGTACACCAGCTTATGTTGCCCCTGAAGTCATCAATAGGAAGGGCTATGATGGTGCAAAAGCTGATATCTGGTCTTGTGGAGTAGTTTTGTTTGTCCTATTGGCAGGTTATCTCCCATTCCACAATTCGAATTTGATGGAGATGTATCGGAAGATTGGAAAAGCAGAGTATAAATGCCCTAGTTGGTTCCCTCGTGAAGTGCGGCGGTTGCTAAGCAGGATGCTTGATCCAGACCCCATTGCTAGGACTTCAGTAGCAATGATAAGACAAAGTTCTTGGTTCAAAAAGGGATTGAGGTCTAAGAATCTAAGAAGTGGAATAGAAAGTAATGCTGTAGCATCTGAAGATGCAGCAGCTGTTTCTGGACCGTCCGAGAGAAGTGTGCCAGCAGAAGGAAATCAAGAGCCAGATAGACCTCCAACTTTGAATGCTTTCGATATCATCTCCCTTTCCGCGGGGTTCAATTTATCCAGTTTATTTGAAGACAATTCAAAGAAGAAAGAAACATTGTTTACTTGTAGAAAACCAGCCTCTGTTATTCTCTCAAAACTAGAAGAAATGGCTAAACTTCTTCGGTTTCGAGTACAGAAGAAAGAAGCAGGCCTATTGAAATTTGAGGCACTAACAGAGGGAAGAAAGGGGGTATTATCCATTGATACAGAGATCTTCGAGGTTACTCCATCTTTTTATTTGGTGGAAATGAAAAAATCAAACGGAGACACATTGGAATATCAGAAAATATTGAAAGAGGACATAAGGCCAGCTCTACAGGATATTGTATGGGTTTGGCGAGGAGAGCAGGAGCAGCAGCAACAAAATCCTCAGCCTCAGCCTCAGCCTCTTCAACCGCAGGATCGGGTTCGAGATCCTTATACAGAGCAAGAGGGTGCGTCACAACCGCAGTAG | 1422 | 42.33 | MENKASVMVQRYELGRLLGQGTFAKVYYARNTGNNQSVAIKVIDKEKITKASLIDQIKREISIMRLVRHPNILRLYEVMATKTKIYFVLEYAKGGELFDKVAKGRLQEDIAWKYFYQLINAVDFCHSRGVYHRDIKPENLLLDENENLKVSDFGLSALAESKRQDGLLHTTCGTPAYVAPEVINRKGYDGAKADIWSCGVVLFVLLAGYLPFHNSNLMEMYRKIGKAEYKCPSWFPREVRRLLSRMLDPDPIARTSVAMIRQSSWFKKGLRSKNLRSGIESNAVASEDAAAVSGPSERSVPAEGNQEPDRPPTLNAFDIISLSAGFNLSSLFEDNSKKKETLFTCRKPASVILSKLEEMAKLLRFRVQKKEAGLLKFEALTEGRKGVLSIDTEIFEVTPSFYLVEMKKSNGDTLEYQKILKEDIRPALQDIVWVWRGEQEQQQQNPQPQPQPLQPQDRVRDPYTEQEGASQPQ | 473 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 37897994 | 37899415 | - | CePI673135_02g020040.1 | Cec02g2004 | 197057 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec02g2004 | 473 | CDD | CIPK_C | 315 | 429 | - | - | |
Cec02g2004 | 473 | FunFam | Non-specific serine/threonine protein kinase | 5 | 309 | - | - | |
Cec02g2004 | 473 | SUPERFAMILY | Protein kinase-like (PK-like) | 9 | 267 | IPR011009 | - | |
Cec02g2004 | 473 | FunFam | Non-specific serine/threonine protein kinase | 3 | 91 | - | - | |
Cec02g2004 | 473 | ProSitePatterns | Protein kinases ATP-binding region signature. | 18 | 41 | IPR017441 | GO:0005524(InterPro) | |
Cec02g2004 | 473 | MobiDBLite | consensus disorder prediction | 438 | 473 | - | - | |
Cec02g2004 | 473 | Gene3D | Transferase(Phosphotransferase) domain 1 | 2 | 302 | - | - | |
Cec02g2004 | 473 | ProSiteProfiles | NAF domain profile. | 309 | 333 | IPR018451 | GO:0007165(InterPro) | |
Cec02g2004 | 473 | SMART | serkin_6 | 12 | 266 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cec02g2004 | 473 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 4 | 422 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Cec02g2004 | 473 | ProSiteProfiles | Protein kinase domain profile. | 12 | 266 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cec02g2004 | 473 | Pfam | Protein kinase domain | 12 | 266 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cec02g2004 | 473 | Pfam | NAF domain | 311 | 369 | IPR004041 | GO:0007165(InterPro) | |
Cec02g2004 | 473 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 130 | 142 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cec02g2004 | 473 | FunFam | Non-specific serine/threonine protein kinase | 309 | 433 | - | - | |
Cec02g2004 | 473 | MobiDBLite | consensus disorder prediction | 286 | 311 | - | - | |
Cec02g2004 | 473 | CDD | STKc_SnRK3 | 11 | 265 | - | - | |
Cec02g2004 | 473 | Gene3D | Kinase associated domain 1, KA1 | 309 | 434 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec02g2004 | Cec-Chr2:37897994 | Cec04g0775 | Cec-Chr4:27305405 | 1.40E-173 | dispersed | |
Cec02g2003 | Cec-Chr2:37893899 | Cec02g2004 | Cec-Chr2:37897994 | 1.30E-109 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
71768 | PF00069 | Pkinase | 1.40E-74 | CL0016 | Cec | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec02g2004 | - | - | - | 0.0 |