Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cec02g2013 | ATGGTTATGGAGTTTTTGTTCTCTAGTAATTCTGTAGAGGATCCTAGTGGCGGCCCAACCTTTGGCCATCGGAGACTGCCGGAGCATGTGGCGGCCGCGATGTCTAAACCGCCATTGCTCCCCCCCTTGTCTCCACCTCTTTACTCTCCTTCTTCCTTCTTCACTATCCCCCCTGGTATCAGCCCCACCCAATTTCTTCACTCCCCTCTCCTCCTCAACTCTCCTCATATTCTGCCATCGCCGTCTACCGGAGCAATATCCGCCGGAGATTTGACCGGAACCAGTAACAATTCCGGCCACCATCAACAGAACATCAAACAAGAACACAACAACTTTACTGAATTCTCATTTCCTCGTACTCATCACAATACAAGATCTTCATCATCATCATCAATGTTTCAACCCTCTTCAACAGTGCAAAGTCAGCGATGGGGTTGTGAAGCCGTCGTGAACGGCGGCTCCGAAGCCGAGCAGCGGGCAGAATGGCGGTTGAGAAAAAGAGGATCTGAAGATGGGTTTAATTGGAGAAAATATGGGCAAAAAGTAGTAAAAGGAAGTGAAAATCCGAGAAGCTATTACAAATGTACATACCCAAATTGCCCTGTAAGAAAGCAAGTTGAAAGATCATTGAATGGTCAAATTACTGAAATTGTTTACAAAAGTAAACATAACCATCCTAAACCAGACTTCACAAGGAGGTCATCATCGTCTTTTTCTTCTTCTTCATTGTTATCAGAAGCTTTACCTGCAACTATGGCGGCAGAGCCAAAGAATTCAATTGCCTCTGATTCCTTCACCACGCCGGAGAATTCTTCAATCACGATTGGGGATGATGATGATGATTCCCACGAAGCTGATGCAAAAAGATGGAAAAGTGAGAGTGAGAAGGAAATTATGTCTCCAGTAGGAGGGAAAACAGTGAGAGAACAAAGGGTTGTAATTCAAACAATTAGCAATGTGGATAAATTAGATGATGGATATTGGTGGAGAAAATATGGACAGAAAGTGGTCAAGGGCAATTCAAATCCAAGGAGCTATTACAAGTGCACATATGCAGGATGTGGAGTGAGAAAGCATATAGAGAGAGCATCCCACGATATAAGGGCAGTCATCACTACCTACGAAGGAAAGCACAACCACGAAGTTCCGGTAGCCCGTGGCGGCGGCGGCGGTAGGCCGATACTTATTAGTAGTGAAGGAAGTAATAATGATGTTGCATCGAACAGCAGTGGCAACCGACGGCCGAGTTCAGAGATCTGTAGTGGTAATAATGGATTGTGGGAGTTGACAAACATGGTGTGGAGGAGCAAAGAAGAAGCCGTCGATGACATATTTATGGGTTGTTATTAG | 1350 | 45.11 | MVMEFLFSSNSVEDPSGGPTFGHRRLPEHVAAAMSKPPLLPPLSPPLYSPSSFFTIPPGISPTQFLHSPLLLNSPHILPSPSTGAISAGDLTGTSNNSGHHQQNIKQEHNNFTEFSFPRTHHNTRSSSSSSMFQPSSTVQSQRWGCEAVVNGGSEAEQRAEWRLRKRGSEDGFNWRKYGQKVVKGSENPRSYYKCTYPNCPVRKQVERSLNGQITEIVYKSKHNHPKPDFTRRSSSSFSSSSLLSEALPATMAAEPKNSIASDSFTTPENSSITIGDDDDDSHEADAKRWKSESEKEIMSPVGGKTVREQRVVIQTISNVDKLDDGYWWRKYGQKVVKGNSNPRSYYKCTYAGCGVRKHIERASHDIRAVITTYEGKHNHEVPVARGGGGGRPILISSEGSNNDVASNSSGNRRPSSEICSGNNGLWELTNMVWRSKEEAVDDIFMGCY | 449 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 2 | 37960284 | 37965444 | + | CePI673135_02g020130.1 | Cec02g2013 | 197066 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cec02g2013 | 449 | Gene3D | WRKY domain | 155 | 229 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cec02g2013 | 449 | Gene3D | WRKY domain | 308 | 384 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cec02g2013 | 449 | MobiDBLite | consensus disorder prediction | 83 | 104 | - | - | |
| Cec02g2013 | 449 | SUPERFAMILY | WRKY DNA-binding domain | 168 | 228 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cec02g2013 | 449 | SMART | WRKY_cls | 323 | 382 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cec02g2013 | 449 | SMART | WRKY_cls | 169 | 227 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cec02g2013 | 449 | SUPERFAMILY | WRKY DNA-binding domain | 315 | 383 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cec02g2013 | 449 | MobiDBLite | consensus disorder prediction | 257 | 273 | - | - | |
| Cec02g2013 | 449 | MobiDBLite | consensus disorder prediction | 116 | 139 | - | - | |
| Cec02g2013 | 449 | ProSiteProfiles | WRKY domain profile. | 318 | 383 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cec02g2013 | 449 | MobiDBLite | consensus disorder prediction | 257 | 302 | - | - | |
| Cec02g2013 | 449 | MobiDBLite | consensus disorder prediction | 381 | 418 | - | - | |
| Cec02g2013 | 449 | Pfam | WRKY DNA -binding domain | 324 | 381 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cec02g2013 | 449 | Pfam | WRKY DNA -binding domain | 170 | 226 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cec02g2013 | 449 | ProSiteProfiles | WRKY domain profile. | 170 | 228 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Cec02g2013 | 449 | MobiDBLite | consensus disorder prediction | 218 | 237 | - | - | |
| Cec02g2013 | 449 | MobiDBLite | consensus disorder prediction | 396 | 418 | - | - | |
| Cec02g2013 | 449 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 100 | 392 | IPR044810 | GO:0003700(InterPro) | |
| Cec02g2013 | 449 | FunFam | WRKY transcription factor 57 | 309 | 383 | - | - | |
| Cec02g2013 | 449 | FunFam | WRKY transcription factor | 157 | 229 | - | - | |
| Cec02g2013 | 449 | MobiDBLite | consensus disorder prediction | 276 | 298 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cec02g2013 | Cec-Chr2:37960284 | Cec03g0015 | Cec-Chr3:179653 | 9.30E-79 | dispersed | |
| Cec02g2013 | Cec-Chr2:37960284 | Cec05g2623 | Cec-Chr5:37015293 | 3.10E-58 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 29110 | PF03106 | WRKY | 1.50E-22 | CL0274 | Cec | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cec02g2013 | K13424 | - | csv:101205221 | 390.193 |