Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g2013 ATGGTTATGGAGTTTTTGTTCTCTAGTAATTCTGTAGAGGATCCTAGTGGCGGCCCAACCTTTGGCCATCGGAGACTGCCGGAGCATGTGGCGGCCGCGATGTCTAAACCGCCATTGCTCCCCCCCTTGTCTCCACCTCTTTACTCTCCTTCTTCCTTCTTCACTATCCCCCCTGGTATCAGCCCCACCCAATTTCTTCACTCCCCTCTCCTCCTCAACTCTCCTCATATTCTGCCATCGCCGTCTACCGGAGCAATATCCGCCGGAGATTTGACCGGAACCAGTAACAATTCCGGCCACCATCAACAGAACATCAAACAAGAACACAACAACTTTACTGAATTCTCATTTCCTCGTACTCATCACAATACAAGATCTTCATCATCATCATCAATGTTTCAACCCTCTTCAACAGTGCAAAGTCAGCGATGGGGTTGTGAAGCCGTCGTGAACGGCGGCTCCGAAGCCGAGCAGCGGGCAGAATGGCGGTTGAGAAAAAGAGGATCTGAAGATGGGTTTAATTGGAGAAAATATGGGCAAAAAGTAGTAAAAGGAAGTGAAAATCCGAGAAGCTATTACAAATGTACATACCCAAATTGCCCTGTAAGAAAGCAAGTTGAAAGATCATTGAATGGTCAAATTACTGAAATTGTTTACAAAAGTAAACATAACCATCCTAAACCAGACTTCACAAGGAGGTCATCATCGTCTTTTTCTTCTTCTTCATTGTTATCAGAAGCTTTACCTGCAACTATGGCGGCAGAGCCAAAGAATTCAATTGCCTCTGATTCCTTCACCACGCCGGAGAATTCTTCAATCACGATTGGGGATGATGATGATGATTCCCACGAAGCTGATGCAAAAAGATGGAAAAGTGAGAGTGAGAAGGAAATTATGTCTCCAGTAGGAGGGAAAACAGTGAGAGAACAAAGGGTTGTAATTCAAACAATTAGCAATGTGGATAAATTAGATGATGGATATTGGTGGAGAAAATATGGACAGAAAGTGGTCAAGGGCAATTCAAATCCAAGGAGCTATTACAAGTGCACATATGCAGGATGTGGAGTGAGAAAGCATATAGAGAGAGCATCCCACGATATAAGGGCAGTCATCACTACCTACGAAGGAAAGCACAACCACGAAGTTCCGGTAGCCCGTGGCGGCGGCGGCGGTAGGCCGATACTTATTAGTAGTGAAGGAAGTAATAATGATGTTGCATCGAACAGCAGTGGCAACCGACGGCCGAGTTCAGAGATCTGTAGTGGTAATAATGGATTGTGGGAGTTGACAAACATGGTGTGGAGGAGCAAAGAAGAAGCCGTCGATGACATATTTATGGGTTGTTATTAG 1350 45.11 MVMEFLFSSNSVEDPSGGPTFGHRRLPEHVAAAMSKPPLLPPLSPPLYSPSSFFTIPPGISPTQFLHSPLLLNSPHILPSPSTGAISAGDLTGTSNNSGHHQQNIKQEHNNFTEFSFPRTHHNTRSSSSSSMFQPSSTVQSQRWGCEAVVNGGSEAEQRAEWRLRKRGSEDGFNWRKYGQKVVKGSENPRSYYKCTYPNCPVRKQVERSLNGQITEIVYKSKHNHPKPDFTRRSSSSFSSSSLLSEALPATMAAEPKNSIASDSFTTPENSSITIGDDDDDSHEADAKRWKSESEKEIMSPVGGKTVREQRVVIQTISNVDKLDDGYWWRKYGQKVVKGNSNPRSYYKCTYAGCGVRKHIERASHDIRAVITTYEGKHNHEVPVARGGGGGRPILISSEGSNNDVASNSSGNRRPSSEICSGNNGLWELTNMVWRSKEEAVDDIFMGCY 449
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
2 37960284 37965444 + CePI673135_02g020130.1 Cec02g2013 197066
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cec02g2013 449 Gene3D WRKY domain 155 229 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec02g2013 449 Gene3D WRKY domain 308 384 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec02g2013 449 MobiDBLite consensus disorder prediction 83 104 - -
Cec02g2013 449 SUPERFAMILY WRKY DNA-binding domain 168 228 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec02g2013 449 SMART WRKY_cls 323 382 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec02g2013 449 SMART WRKY_cls 169 227 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec02g2013 449 SUPERFAMILY WRKY DNA-binding domain 315 383 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec02g2013 449 MobiDBLite consensus disorder prediction 257 273 - -
Cec02g2013 449 MobiDBLite consensus disorder prediction 116 139 - -
Cec02g2013 449 ProSiteProfiles WRKY domain profile. 318 383 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec02g2013 449 MobiDBLite consensus disorder prediction 257 302 - -
Cec02g2013 449 MobiDBLite consensus disorder prediction 381 418 - -
Cec02g2013 449 Pfam WRKY DNA -binding domain 324 381 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec02g2013 449 Pfam WRKY DNA -binding domain 170 226 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec02g2013 449 ProSiteProfiles WRKY domain profile. 170 228 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cec02g2013 449 MobiDBLite consensus disorder prediction 218 237 - -
Cec02g2013 449 MobiDBLite consensus disorder prediction 396 418 - -
Cec02g2013 449 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 100 392 IPR044810 GO:0003700(InterPro)
Cec02g2013 449 FunFam WRKY transcription factor 57 309 383 - -
Cec02g2013 449 FunFam WRKY transcription factor 157 229 - -
Cec02g2013 449 MobiDBLite consensus disorder prediction 276 298 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2013 Cec-Chr2:37960284 Cec03g0015 Cec-Chr3:179653 9.30E-79 dispersed
Cec02g2013 Cec-Chr2:37960284 Cec05g2623 Cec-Chr5:37015293 3.10E-58 transposed
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29110 PF03106 WRKY 1.50E-22 CL0274 Cec TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g2013 K13424 - csv:101205221 390.193