Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g2031 ATGGGAGCCGGTTCATCTCCTTGCGCCTCTTGCAAATTGCTACGGCGGCGCTGCGCAAAAGACTGCATTTTTGCGCCTTATTTCCCTTCTGATGACCCTTTCAAATTCGCCATTGTTCATAAGATCTTCGGTGCCAGCAATGTCAGCAAAATGTTGCAGGAAGTTCCAGTAGAACAGAGAGTAGATGCAGTGAGCAGTATGGTATATGAAGCGAGTGCAAGAATGCGGGATCCAGTGTATGGTTGTGCAGGGACAATCTCGTTTCTACAAAATGAAGTGTCCCGATTGGAAATGCAACTCGGGGCAGCACAAGCAGAAATTTTAACTTTGCATATGCAGCAACAAGCAACTCCAACAACATTTCCGACGACAACGACCCACACGGATCAAGATGATCAAAATCTTGTTATTTTCTCAAATGCTGATTCTTCTAATTCCTCCTATATTTTCCAGGAAGAGGGGGACTATTACCCTCTATGGACTTGA 486 45.06 MGAGSSPCASCKLLRRRCAKDCIFAPYFPSDDPFKFAIVHKIFGASNVSKMLQEVPVEQRVDAVSSMVYEASARMRDPVYGCAGTISFLQNEVSRLEMQLGAAQAEILTLHMQQQATPTTFPTTTTHTDQDDQNLVIFSNADSSNSSYIFQEEGDYYPLWT 161
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38077549 38078319 + CePI673135_02g020310.1 Cec02g2031 197084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g2031 161 Coils Coil 86 106 - -
Cec02g2031 161 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Cec02g2031 161 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Cec02g2031 161 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 127 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2031 Cec-Chr2:38077549 Cec09g2359 Cec-Chr9:40416421 1.40E-37 dispersed
Cec02g2031 Cec-Chr2:38077549 Cec07g0514 Cec-Chr7:5931469 8.00E-49 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29111 PF03195 LOB 1.00E-39 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g2031 - - - 0.0