Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g2110 ATGCCTTATCGTCGTCATTCTCAATCAGTCTGTTTCCAGGAAAGAACTGGAAATCATAATTTCAACTTTATAAACCTAATAACTCACCGCCTGATTCACCCCCTTCTCCATCGCTTGCTTTTCCCCTGTTTCTACCTCAGCTTCATTCTTGGATTCTGTTTCTATTTGGAGGCTTACATAACTATGGATCACCCAAATCTTAACGATTTCCCAGTTCGTGGAATTGATTATCAAACCCCTTTAACCCAATTTCACGATCAAACTTCTTTACCCACTTCATATCTATACCCAGAATTCGAAAACAGTTTTGTATTCAACAACCCATCTCCAGATCTTGTTCCTTTCGTCGACCCCAACGGTTCATCAGCGGCGGAGTTGAAATTAAGCGAAGGTGTGGCTTCTTCAGGGCGAAGCCCTGGTGGCGATTCTTCCTCAGATGAGAGTGATTTCAGGGAAAGTGTTCTCAAGTACATAAGCCAAATGCTTATGGAAGAGAATTTGGAAGAGAAGCCTTGTATGTTTTATGATCCCTTGGGCCTTGAAGTTACCGAGAAATCATTCTATGATGCTCTTGTTAAGAATTACCCTCCTTCTCCTAACCAACCTCCCCTCTTGGATTGTGACAGTGATCTTGCTAGTGCTACTCTTAGTGTTCCCAATACCAATTCACCTGACTCCCAATGGGTTGTTGATCCTGGAGAACATAAATCCTCTGTACTTCCAAACCCTGTTCTTAGTAGTCATGAGCTTGTCAATGAGTTGTTGGCTCATAATATCTTTAGTGATAGCACATCTATATTGCAATATCAAAAGGGGTTGGAGGAAGCAAGTAAGTTTCTTCCAGTGGGTACCCAGTTGAATATTGATCTTGGCAGTAGCATGGTACCAGGAGTAGTTTCTAAGAAGGAGAATTCGCCGAATGGATCGAAGCGAAGGAAGAGTCGTGAACGTGAAGATGTGGACTTGGATTCAGAAGAAGGTAGGAGAAACAAGCATTCAACCATTTCTGTGGATGAGGAAGAATTATCCGAGATGTTTGATAAGGTTTTACTTCATGATTGTGGAAATGAGACTACTGCAAATGGTGGGCGTGAAAATTTGCAGTATAACGGTCAACTTCATGGATCGATTACTTCAAAAGCTCGGGAAAAGAAACAGGAGAAGAGAAAAGACTCTGTGGATTTGAGAAATCTTCTGATATTATGCGCACAAGCTGTGTCTTCTGATGATCGTCGGATTGCGTATGAACTGCTTAAGCAGATTAGGCAGCATTCTACAATCATTGGGGATGGTTTTCAAAGAATGGCTCATTTCTTTGCTAATGCTCTTGAGGCTCGTATGGTTGGGACTGGCACAGGAAGTAGAATCTACTATGAATCATTAGCTCAAAGCAAAATTTCAGCTGCTGATATGTTGAAAGCTTACCAAGCTCACTTATCATCCTGCCCTTTTAAGAAGCTCTCACTCTTTTTCATGATTAAAATGATTTTGAAGGTTGCTGAGAATGCTAAAAGTCTTCATGTTATTGATTTTGGCATTTGTTATGGTTTCTTATGGCCAATGTTAATTCAGTTTCTTGCACAACTACCTGATGGTCCTCCCAATCTACGCATTACCGGTATAGATCATCCTCTACCAGGATTTCGTCCAGCAGAAAAGATCGTCGAGTCAGGCCATCGTTTGGAAAAATACTGTGAGCGGTTTAATGTTCCTTTTCAATATCAAGCCATACCATCAAATAACTGGGAAACTATCCGAGTTGAGGACTTAAAGCTCGATAGTAATGACGTGCTTGTTGTGAACTGTTTCTACAGGTTTAACAACCTACTTGACGAAACTGTTGAAGAAAGTAGTCCACGGGACGCTGTTCTTCGTTTAATAAGGAAGATGAATCCAAACATCTTTGTACATTCTGTGGTTAATGGATCCTACCATGCGCCATTCTTCATAACACGATTCAGGGAAGCACTCTTCCATTTCTCTGCATTATATGATGCTCTAGACGTTAATTTACCTCGTGACAGCGATGAGAGGATGATGCTAGAGAGAGAGTTTCTCGGTCGCCAAATTATGAACGTCGTAGCATGTGAGGGTGTCCAAAGGGTTGAGAGGCCTGAAACCTATAAGCAATGGCAGGTTAGATGTATGAGGGCAGGTTTCAAGCAACTTCCTTTAGACAAAGAGATCATGAACAAGTTTAGGAGCAAACTAACATCCTATTACCACAAAGATTTTGTACTGGATGAAGATGAGGGTTGGATGCTTCAAGGATGGAAAGGCCGGATCGTCTATGCTTCTTGTTGCTGGGTACCAGCATAG 2319 41.61 MPYRRHSQSVCFQERTGNHNFNFINLITHRLIHPLLHRLLFPCFYLSFILGFCFYLEAYITMDHPNLNDFPVRGIDYQTPLTQFHDQTSLPTSYLYPEFENSFVFNNPSPDLVPFVDPNGSSAAELKLSEGVASSGRSPGGDSSSDESDFRESVLKYISQMLMEENLEEKPCMFYDPLGLEVTEKSFYDALVKNYPPSPNQPPLLDCDSDLASATLSVPNTNSPDSQWVVDPGEHKSSVLPNPVLSSHELVNELLAHNIFSDSTSILQYQKGLEEASKFLPVGTQLNIDLGSSMVPGVVSKKENSPNGSKRRKSREREDVDLDSEEGRRNKHSTISVDEEELSEMFDKVLLHDCGNETTANGGRENLQYNGQLHGSITSKAREKKQEKRKDSVDLRNLLILCAQAVSSDDRRIAYELLKQIRQHSTIIGDGFQRMAHFFANALEARMVGTGTGSRIYYESLAQSKISAADMLKAYQAHLSSCPFKKLSLFFMIKMILKVAENAKSLHVIDFGICYGFLWPMLIQFLAQLPDGPPNLRITGIDHPLPGFRPAEKIVESGHRLEKYCERFNVPFQYQAIPSNNWETIRVEDLKLDSNDVLVVNCFYRFNNLLDETVEESSPRDAVLRLIRKMNPNIFVHSVVNGSYHAPFFITRFREALFHFSALYDALDVNLPRDSDERMMLEREFLGRQIMNVVACEGVQRVERPETYKQWQVRCMRAGFKQLPLDKEIMNKFRSKLTSYYHKDFVLDEDEGWMLQGWKGRIVYASCCWVPA 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38678140 38680458 - CePI673135_02g021100.1 Cec02g2110 197163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g2110 772 ProSiteProfiles GRAS family profile. 386 770 IPR005202 -
Cec02g2110 772 MobiDBLite consensus disorder prediction 305 335 - -
Cec02g2110 772 MobiDBLite consensus disorder prediction 129 149 - -
Cec02g2110 772 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 379 769 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cec02g2110 772 MobiDBLite consensus disorder prediction 296 335 - -
Cec02g2110 772 Pfam GRAS domain family 395 769 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2110 Cec-Chr2:38678140 Cec09g0966 Cec-Chr9:9239198 5.00E-56 dispersed
Cec01g0636 Cec-Chr1:6840444 Cec02g2110 Cec-Chr2:38678140 4.70E-46 transposed
Cec05g1316 Cec-Chr5:13433811 Cec02g2110 Cec-Chr2:38678140 5.00E-45 transposed
Cec10g2124 Cec-Chr10:35838549 Cec02g2110 Cec-Chr2:38678140 1.60E-155 wgd
Cec02g2110 Cec-Chr2:38678140 Cec03g0134 Cec-Chr3:1305707 3.30E-148 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29118 PF03514 GRAS 6.30E-105 CL0063 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g2110 K27753 - csv:101203568 1177.93