Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g2116 ATGGCCACTATCATTTCTCTCTGCATTGCTTCTCTTCTCTCATTTTCCCTCCTTGTCCAAGCCAGAATCCCCGGAGTTTACTCCGGCGGCCCATGGCAGAGCGCCCACGCCACTTTCTACGGTGGCGCCGACGCTTCCGGCACCATGGGTGGAGCTTGTGGGTACGGGAATTTGTACAGCCAAGGTTATGGCGTGAACACGGCGGCCCTGAGTACCGCATTGTTCAATAAGGGTCAGAGCTGCGGCGCTTGCTTTGAAATTAAGTGCGCTAATGACCCTAGATGGTGCCATTCTGGTAGTCCCTCCATCTTGGTTACTGCTACTAATTTCTGCCCGCCCAACTATGCTCTTCCTAACGATAATGGAGGCTGGTGTAACCCTCCCCGGACTCACTTCGATCTTGCCATGCCTATGTTCCTTAAAATCGCTGAGTACCGCGCCGGAATCGTCCCCGTCTCTTACCGCCGTGTACCATGCCGGAAGCAAGGAGGAATCAGGTTCACTATCAACGGGTTCCGTTACTTCAATTTGGTTCTAATCACCAACGTGGCAGGTGCAGGGGATATCGTGAGGGTCAGCGTCAAAGGAACAAGAACCGGGTGGATGAGCTTAACAAGAAACTGGGGGCAAAATTGGCAATCCAATGCCGTCTTAGTGGGCCAGGCTCTTTCTTTTAGAGTTACCGGCAGTGACCGACGAACCTCAACGTCATGGAACATAGTCCCCGCTCATTGGCAGTTCGGCCAAACTTTCACCGGCAAGAACTTCCGTGTTTAA 777 52.9 MATIISLCIASLLSFSLLVQARIPGVYSGGPWQSAHATFYGGADASGTMGGACGYGNLYSQGYGVNTAALSTALFNKGQSCGACFEIKCANDPRWCHSGSPSILVTATNFCPPNYALPNDNGGWCNPPRTHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVRVSVKGTRTGWMSLTRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSWNIVPAHWQFGQTFTGKNFRV 258
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38725318 38727098 + CePI673135_02g021160.1 Cec02g2116 197169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g2116 258 CDD DPBB_EXPA_N 31 159 - -
Cec02g2116 258 Gene3D - 164 256 IPR036749 -
Cec02g2116 258 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 174 253 IPR007117 -
Cec02g2116 258 PRINTS Expansin signature 163 175 IPR002963 GO:0009664(InterPro)
Cec02g2116 258 PRINTS Expansin signature 239 255 IPR002963 GO:0009664(InterPro)
Cec02g2116 258 PRINTS Expansin signature 175 196 IPR002963 GO:0009664(InterPro)
Cec02g2116 258 PRINTS Expansin signature 62 76 IPR002963 GO:0009664(InterPro)
Cec02g2116 258 PRINTS Expansin signature 89 100 IPR002963 GO:0009664(InterPro)
Cec02g2116 258 PRINTS Expansin signature 122 139 IPR002963 GO:0009664(InterPro)
Cec02g2116 258 PRINTS Expansin signature 103 113 IPR002963 GO:0009664(InterPro)
Cec02g2116 258 PRINTS Expansin signature 210 231 IPR002963 GO:0009664(InterPro)
Cec02g2116 258 PRINTS Expansin signature 139 152 IPR002963 GO:0009664(InterPro)
Cec02g2116 258 Pfam Expansin C-terminal domain 165 242 IPR007117 -
Cec02g2116 258 Gene3D - 20 160 IPR036908 -
Cec02g2116 258 SUPERFAMILY PHL pollen allergen 161 253 IPR036749 -
Cec02g2116 258 FunFam Expansin 21 160 - -
Cec02g2116 258 PRINTS Expansin/Lol pI family signature 239 253 IPR007118 GO:0005576(InterPro)
Cec02g2116 258 PRINTS Expansin/Lol pI family signature 201 215 IPR007118 GO:0005576(InterPro)
Cec02g2116 258 PRINTS Expansin/Lol pI family signature 49 67 IPR007118 GO:0005576(InterPro)
Cec02g2116 258 PRINTS Expansin/Lol pI family signature 31 46 IPR007118 GO:0005576(InterPro)
Cec02g2116 258 PRINTS Expansin/Lol pI family signature 71 89 IPR007118 GO:0005576(InterPro)
Cec02g2116 258 PRINTS Expansin/Lol pI family signature 147 163 IPR007118 GO:0005576(InterPro)
Cec02g2116 258 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 50 164 IPR007112 -
Cec02g2116 258 PANTHER EXPANSIN-A15 13 256 IPR002963 GO:0009664(InterPro)
Cec02g2116 258 Pfam Lytic transglycolase 67 154 IPR009009 -
Cec02g2116 258 FunFam Expansin 164 256 - -
Cec02g2116 258 SMART dpbb_1 67 154 IPR007112 -
Cec02g2116 258 SUPERFAMILY Barwin-like endoglucanases 31 182 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0866 Cec-Chr1:9890651 Cec02g2116 Cec-Chr2:38725318 3.20E-74 dispersed
Cec02g2116 Cec-Chr2:38725318 Cec07g0569 Cec-Chr7:7096549 4.10E-103 dispersed
Cec02g2116 Cec-Chr2:38725318 Cec03g0141 Cec-Chr3:1400137 1.90E-137 wgd
Cec02g2116 Cec-Chr2:38725318 Cec04g0951 Cec-Chr4:29183375 1.90E-137 wgd
Cec02g2116 Cec-Chr2:38725318 Cec07g0374 Cec-Chr7:3761518 9.00E-135 wgd
Cec02g2116 Cec-Chr2:38725318 Cec09g2072 Cec-Chr9:37762880 2.40E-124 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g2116 - - - 0.0