Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g2133 ATGGAGGAGGATAACGGTGGCGGCTCCTTTCGGAGTTTGATTGACTTGGTGAACGATGTAGCTTCAATCTCAGACTACAGGTACGCGGTCAGAAAGCAGTATTGTAATTTAGCAAGACGACTGAAGCTGTTGATCCCATTGTTTGAGGAGATGAGGGATATGAAGCAGCCGCTGCCGGGTCATACCGTGAAAGCTCTTGCTTCGTTGAAGGAAGCTCTGGAATCGACCAAGGAGTTGCTTAAACATGGGAGCGAGGGGAGCAAGATTTATCTGGCCTTGGAGAGAGAGCAAATTTTGAATCAATTTCACGAGGTGACAGCAAGACTAGAGCAAGCTCTGAATGACATTTCACATGAAGATCTTGACATATCTGATGAAGTTAAGGAACAGGTTGAGCTTGTTCTCTCTCAATTCAAAAGAGCTAGAGGAAGGAATGATACACAAGATGCTGAGCTGTATGTCAACCTCAACTCTCTCTATAACAACAGCAGAGACTCTGTTGATCCTTCTGTCTTGAAAGGACTGGCTGAGAAGTTGCAGCTGATTGATATAGCTGATCTTACTCAAGAGTCTCTTGATTTACATGAAATGGTTTCGGCTAGTGATGGAGATCCAGGGGGGAGATTTGAGAAAATGTCAATATTATTGAAGAAAATAAAAGATTTTATGCTAACTGAAAACCCTGAAATTGGTCTTTCTTCAAAAGAACAAAGTCATCCTCGCACTGGTGGAAAAGTGTCTGCTGGTAAGAAAGATATAGCGTCCCTTCACATACCTGAAGACTTTCGGTGCCCCATATCCCTGGATTTGATGAAAGATCCTGTCATTGTCTCCACAGGACAGACCTATGAACGTGCTTTCATTGAGAAGTGGCTGGCAGATGGACACTCAACATGCCCAAAAACTCAACAAGTTCTCACTAGCAAAATTCTTACACCAAATTATGTTTTACGTAGTCTCATAGCTCAATGGTGTGAGGTCAATGGAATTGAACCACCACAACGTTCCGGCAGTTCTCAGCCCAGTGAGTCGATGACTCCGGCCGAACGCTCTAAGTATGAAGCTCTACTCCACAAACTCACATCAGGTAACATTGAAGACAGACGAGCTGCTGCTGGTGAGATTCGCCTTCTAGCCAAACGCAATGCAAATAATCGTGTGGCCATTGCTGAAGCTGGTGCAATCCCTCTCCTTGTTGATCTCCTTTCAACAACAGACCCCCTCACTCAAGAACATGCTGTGACAGCATTGCTTAACCTTTCAATTTGTGACAATAATAAGAGAAGCATCATGTCCTGTAGGGCAGCGCCTGCCATAGTCCATGTGCTGAAGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCTGCCACTCTTTTCAGTCTCTCTGTTGTAGACGAATATAAAATAATGATCGGCGCATCGGGAGCCATTCTGCCACTTATTGCACTACTCAATGAAGGTACTCAAAGGGGGAAGAAGGATGCTGCAACCGCTCTTTTCAACTTGTGTTTCTTCCAAGGGAACAAGATAAAGGCAGTCAGGGGTGGTGTTGTTTCCATTCTGATGCAGCTGTTGACGGAATCTAGAATAGGGATGGTAGATGAGGCCCTAGCAATATTAGCCATACTGGCTAGCAATTCTGAAGGGCGAGCTGCGATTGGAGCGGCCAAATCTGTCCCCATTTTAGTAAATCTCATTGGAACAGGATCCCCTAGGAACAGGGAAAATGCAGCTGCAGTTTTGGTGCATCTTTGCATGGGAGACAAACGACATCTTGTGGAAGCGAAGGAGCTCGGAGTGATTGGTTTGCTTATGGATTTGGCAGAAAATGGCACAGACCGAGGTAAGCGAAAAGCAACCCAATTGCTTGACCAAATAAACAGGTTTACAGAGCTGCAGAAAGAGGCTGAGGTTCAGTCTCAGTCTCAAACACAACTGTTATTACCACAACCTTCCGCAATTGGCAACGTCGAAAGCTGA 1980 45.25 MEEDNGGGSFRSLIDLVNDVASISDYRYAVRKQYCNLARRLKLLIPLFEEMRDMKQPLPGHTVKALASLKEALESTKELLKHGSEGSKIYLALEREQILNQFHEVTARLEQALNDISHEDLDISDEVKEQVELVLSQFKRARGRNDTQDAELYVNLNSLYNNSRDSVDPSVLKGLAEKLQLIDIADLTQESLDLHEMVSASDGDPGGRFEKMSILLKKIKDFMLTENPEIGLSSKEQSHPRTGGKVSAGKKDIASLHIPEDFRCPISLDLMKDPVIVSTGQTYERAFIEKWLADGHSTCPKTQQVLTSKILTPNYVLRSLIAQWCEVNGIEPPQRSGSSQPSESMTPAERSKYEALLHKLTSGNIEDRRAAAGEIRLLAKRNANNRVAIAEAGAIPLLVDLLSTTDPLTQEHAVTALLNLSICDNNKRSIMSCRAAPAIVHVLKWGSMEARENAAATLFSLSVVDEYKIMIGASGAILPLIALLNEGTQRGKKDAATALFNLCFFQGNKIKAVRGGVVSILMQLLTESRIGMVDEALAILAILASNSEGRAAIGAAKSVPILVNLIGTGSPRNRENAAAVLVHLCMGDKRHLVEAKELGVIGLLMDLAENGTDRGKRKATQLLDQINRFTELQKEAEVQSQSQTQLLLPQPSAIGNVES 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38871217 38874860 + CePI673135_02g021330.1 Cec02g2133 197186

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g2133 659 Pfam U-box domain 258 328 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec02g2133 659 CDD MLKL_NTD 31 139 - -
Cec02g2133 659 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec02g2133 659 SMART arm_5 423 463 IPR000225 GO:0005515(InterPro)
Cec02g2133 659 SMART arm_5 505 545 IPR000225 GO:0005515(InterPro)
Cec02g2133 659 SMART arm_5 464 504 IPR000225 GO:0005515(InterPro)
Cec02g2133 659 SMART arm_5 546 586 IPR000225 GO:0005515(InterPro)
Cec02g2133 659 SMART arm_5 382 422 IPR000225 GO:0005515(InterPro)
Cec02g2133 659 FunFam RING-type E3 ubiquitin transferase 8 119 - -
Cec02g2133 659 SMART Ubox_2 261 324 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec02g2133 659 Coils Coil 95 115 - -
Cec02g2133 659 SUPERFAMILY RING/U-box 252 332 - -
Cec02g2133 659 Pfam Armadillo/beta-catenin-like repeat 382 421 IPR000225 GO:0005515(InterPro)
Cec02g2133 659 Pfam Armadillo/beta-catenin-like repeat 546 585 IPR000225 GO:0005515(InterPro)
Cec02g2133 659 Pfam Armadillo/beta-catenin-like repeat 465 503 IPR000225 GO:0005515(InterPro)
Cec02g2133 659 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 393 431 IPR000225 GO:0005515(InterPro)
Cec02g2133 659 Pfam Mixed lineage kinase domain-like N-terminal domain 29 151 IPR054000 -
Cec02g2133 659 MobiDBLite consensus disorder prediction 331 350 - -
Cec02g2133 659 Gene3D - 529 648 IPR011989 -
Cec02g2133 659 Gene3D - 348 528 IPR011989 -
Cec02g2133 659 SUPERFAMILY ARM repeat 354 626 IPR016024 -
Cec02g2133 659 FunFam RING-type E3 ubiquitin transferase 337 632 - -
Cec02g2133 659 MobiDBLite consensus disorder prediction 640 659 - -
Cec02g2133 659 FunFam RING-type E3 ubiquitin transferase 257 331 - -
Cec02g2133 659 CDD RING-Ubox_PUB 259 311 IPR045210 -
Cec02g2133 659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 331 IPR013083 -
Cec02g2133 659 Gene3D - 9 119 IPR036537 GO:0007166(InterPro)
Cec02g2133 659 PANTHER U BOX DOMAIN-CONTAINING 30 627 - -
Cec02g2133 659 MobiDBLite consensus disorder prediction 332 347 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g2133 K27628 - - csv:101221150 1145.18
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1479 Cec-Chr1:29459134 Cec02g2133 Cec-Chr2:38871217 2.70E-49 dispersed
Cec02g2133 Cec-Chr2:38871217 Cec07g0695 Cec-Chr7:12291413 5.80E-61 dispersed
Cec02g1026 Cec-Chr2:16599482 Cec02g2133 Cec-Chr2:38871217 6.00E-87 transposed
Cec04g1850 Cec-Chr4:37125891 Cec02g2133 Cec-Chr2:38871217 4.40E-15 transposed
Cec05g2340 Cec-Chr5:34660502 Cec02g2133 Cec-Chr2:38871217 7.30E-122 transposed
Cec07g0255 Cec-Chr7:2505814 Cec02g2133 Cec-Chr2:38871217 6.90E-37 transposed
Cec07g0925 Cec-Chr7:22979692 Cec02g2133 Cec-Chr2:38871217 1.70E-23 transposed
Cec02g2133 Cec-Chr2:38871217 Cec03g0157 Cec-Chr3:1536262 8.60E-166 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g428 . Blo03g01237 Bda02g00818 . . Bpe08g01367 Bma14g00501 . Cmo13g00131 . Cma01g00596 Cma13g00132 Car01g00541 Car13g00102 . . Cpe20g00814 Bhi08g00620 . . . . . . Cla02g01975 Cam02g2095 Cec02g2133 Cco02g2163 Clacu02g2083 Cmu02g2020 Cre02g2329 . . Cone18ag0344 Cone11ag1246 Lsi02g01363 Csa06g01498 Chy11g01242 Cme11g01284 . Blo14g00121 Bda07g00590 . . Bpe11g00764 . Bma11g00122 Sed05g2955 . . . Cma20g00410 . Car20g00358 . . Bhi10g00688 Tan05g0378 Cmetu11g2533 . . . . Cla03g00152 Cam03g0158 Cec03g0157 Cco03g0164 Clacu03g0161 Cmu03g0778 Cre03g0473 . Csa01g02400 Chy12g00185 Cme12g00199
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec10g1556 . 1 1041 U-box Gene Family AT5G15400 75.9 0.0e+00 1573.5
Cec02g1312 . 213 857 U-box Gene Family AT2G23140 66.5 5.5e-125 445.3
Cec08g1778 . 1 780 U-box Gene Family AT1G24330 59.3 3.5e-243 838.2
Cec11g1438 . 1 755 U-box Gene Family AT1G24330 58.3 7.6e-230 793.9
Cec08g1778 . 1 779 U-box Gene Family AT1G67530 59.3 1.5e-241 832.8
Cec11g1438 . 1 756 U-box Gene Family AT1G67530 57.3 5.2e-226 781.2
Cec04g1948 . 1 362 U-box Gene Family AT4G21350 62.3 1.4e-120 429.9
Cec07g0255 . 135 460 U-box Gene Family AT3G07360 55.3 3.8e-82 302.0
Cec07g0695 . 265 452 U-box Gene Family AT1G71020 70.9 1.1e-72 271.2
Cec01g0614 . 253 452 U-box Gene Family AT1G71020 55.9 5.0e-54 209.1
Cec03g0157 . 258 427 U-box Gene Family AT1G71020 57.8 9.1e-48 188.3
Cec05g2340 . 249 414 U-box Gene Family AT1G71020 57.4 5.9e-47 185.7
Cec02g2133 . 255 425 U-box Gene Family AT1G71020 57.6 1.0e-46 184.9
Cec07g0695 . 16 656 U-box Gene Family AT1G23030 56.6 1.1e-109 394.4
Cec01g0614 . 18 642 U-box Gene Family AT1G23030 51.9 6.3e-86 315.5
Cec03g0157 . 93 644 U-box Gene Family AT2G28830 59.2 5.4e-103 372.1
Cec02g2133 . 93 635 U-box Gene Family AT2G28830 50.8 1.2e-99 360.9
Cec03g0157 . 1 634 U-box Gene Family AT3G46510 70.7 5.8e-170 594.7
Cec02g2133 . 1 638 U-box Gene Family AT3G46510 66.7 1.3e-158 557.0
Cec05g2340 . 16 623 U-box Gene Family AT3G46510 58.6 5.0e-121 432.2
Cec05g2340 . 12 625 U-box Gene Family AT3G54850 68.3 8.6e-163 570.9
Cec02g2133 . 13 628 U-box Gene Family AT3G54850 57.3 2.3e-115 413.3
Cec03g0157 . 8 627 U-box Gene Family AT3G54850 55.7 6.9e-104 375.2
Cec02g1026 . 92 644 U-box Gene Family AT5G42340 64.7 9.4e-128 454.5
Cec04g0772 . 9 669 U-box Gene Family AT5G01830 57.1 8.8e-198 687.2
Cec03g0670 . 1 714 U-box Gene Family AT1G29340 67.9 3.2e-246 848.2
Cec05g1298 . 27 442 U-box Gene Family AT5G37490 51.2 9.9e-110 394.0
Cec04g0725 . 4 422 U-box Gene Family AT3G52450 52.6 4.0e-119 425.2
Cec10g1844 . 1 403 U-box Gene Family AT3G52450 50.9 3.0e-114 409.1
Cec10g1844 . 1 403 U-box Gene Family AT2G35930 55.8 3.4e-120 428.7
Cec04g0725 . 7 422 U-box Gene Family AT2G35930 51.2 1.0e-116 417.2
Cec02g2358 . 1 385 U-box Gene Family AT2G35930 50.3 3.7e-106 382.1
Cec05g1187 . 9 424 U-box Gene Family AT3G19380 64.2 5.7e-147 517.7
Cec05g1187 . 1 424 U-box Gene Family AT1G49780 64.3 1.7e-151 532.7
Cec04g1242 . 1 407 U-box Gene Family AT5G64660 53.9 2.4e-121 432.6
Cec04g1242 . 1 407 U-box Gene Family AT5G09800 50.8 1.4e-105 380.2
Cec05g2899 . 1 454 U-box Gene Family AT3G49810 63.2 2.1e-155 545.8
Cec08g1724 . 1 454 U-box Gene Family AT3G49810 62.8 2.0e-153 539.3
Cec08g1724 . 1 454 U-box Gene Family AT5G65920 64.1 1.1e-153 540.0
Cec05g2899 . 1 454 U-box Gene Family AT5G65920 61.5 5.5e-148 521.2
Cec05g0177 . 1 872 U-box Gene Family AT2G45910 52.5 3.6e-233 805.1
Cec11g0176 . 47 769 U-box Gene Family AT2G19410 50.9 1.1e-210 730.3
Cec09g1985 . 1 551 U-box Gene Family AT5G40140 54.3 8.7e-95 344.7
Cec01g1494 . 29 498 U-box Gene Family AT5G40140 51.9 1.5e-54 211.1
Cec08g0964 . 26 834 U-box Gene Family AT1G76390 61.3 7.9e-270 926.8
Cec08g0964 . 35 834 U-box Gene Family AT1G20780 61.8 7.0e-279 956.8
Cec08g1778 . 1 782 U-box Gene Family AT1G27910 62.3 1.0e-266 916.4
Cec11g1438 . 1 767 U-box Gene Family AT1G27910 62.4 2.0e-262 902.1
Cec04g1448 . 438 1029 U-box Gene Family AT5G67530 73.8 2.4e-260 894.8
Cec05g0245 . 656 813 U-box Gene Family AT5G67530 52.5 3.1e-45 180.3
Cec10g1892 . 12 162 U-box Gene Family AT5G67530 50.3 9.2e-42 168.7
Cec01g0462 . 176 634 U-box Gene Family AT5G51270 59.0 3.2e-146 516.2
Cec05g0458 . 1 517 U-box Gene Family AT1G04510 74.0 3.4e-221 764.6
Cec05g0458 . 1 486 U-box Gene Family AT2G33340 73.4 1.4e-208 722.6
Cec07g0254 . 10 278 U-box Gene Family AT3G07370 66.9 4.9e-102 367.9
Cec10g1556 . 1 1041 U-box Gene Family AT5G15400 75.9 0.0e+00 1573.5
Cec02g1312 . 213 857 U-box Gene Family AT2G23140 66.5 5.5e-125 445.3
Cec08g1778 . 1 780 U-box Gene Family AT1G24330 59.3 3.5e-243 838.2
Cec11g1438 . 1 755 U-box Gene Family AT1G24330 58.3 7.6e-230 793.9
Cec08g1778 . 1 779 U-box Gene Family AT1G67530 59.3 1.5e-241 832.8
Cec11g1438 . 1 756 U-box Gene Family AT1G67530 57.3 5.2e-226 781.2
Cec04g1948 . 1 362 U-box Gene Family AT4G21350 62.3 1.4e-120 429.9
Cec07g0255 . 135 460 U-box Gene Family AT3G07360 55.3 3.8e-82 302.0
Cec07g0695 . 265 452 U-box Gene Family AT1G71020 70.9 1.1e-72 271.2
Cec01g0614 . 253 452 U-box Gene Family AT1G71020 55.9 5.0e-54 209.1
Cec03g0157 . 258 427 U-box Gene Family AT1G71020 57.8 9.1e-48 188.3
Cec05g2340 . 249 414 U-box Gene Family AT1G71020 57.4 5.9e-47 185.7
Cec02g2133 . 255 425 U-box Gene Family AT1G71020 57.6 1.0e-46 184.9
Cec07g0695 . 16 656 U-box Gene Family AT1G23030 56.6 1.1e-109 394.4
Cec01g0614 . 18 642 U-box Gene Family AT1G23030 51.9 6.3e-86 315.5
Cec03g0157 . 93 644 U-box Gene Family AT2G28830 59.2 5.4e-103 372.1
Cec02g2133 . 93 635 U-box Gene Family AT2G28830 50.8 1.2e-99 360.9
Cec03g0157 . 1 634 U-box Gene Family AT3G46510 70.7 5.8e-170 594.7
Cec02g2133 . 1 638 U-box Gene Family AT3G46510 66.7 1.3e-158 557.0
Cec05g2340 . 16 623 U-box Gene Family AT3G46510 58.6 5.0e-121 432.2
Cec05g2340 . 12 625 U-box Gene Family AT3G54850 68.3 8.6e-163 570.9
Cec02g2133 . 13 628 U-box Gene Family AT3G54850 57.3 2.3e-115 413.3
Cec03g0157 . 8 627 U-box Gene Family AT3G54850 55.7 6.9e-104 375.2
Cec02g1026 . 92 644 U-box Gene Family AT5G42340 64.7 9.4e-128 454.5
Cec04g0772 . 9 669 U-box Gene Family AT5G01830 57.1 8.8e-198 687.2
Cec03g0670 . 1 714 U-box Gene Family AT1G29340 67.9 3.2e-246 848.2
Cec05g1298 . 27 442 U-box Gene Family AT5G37490 51.2 9.9e-110 394.0
Cec04g0725 . 4 422 U-box Gene Family AT3G52450 52.6 4.0e-119 425.2
Cec10g1844 . 1 403 U-box Gene Family AT3G52450 50.9 3.0e-114 409.1
Cec10g1844 . 1 403 U-box Gene Family AT2G35930 55.8 3.4e-120 428.7
Cec04g0725 . 7 422 U-box Gene Family AT2G35930 51.2 1.0e-116 417.2
Cec02g2358 . 1 385 U-box Gene Family AT2G35930 50.3 3.7e-106 382.1
Cec05g1187 . 9 424 U-box Gene Family AT3G19380 64.2 5.7e-147 517.7
Cec05g1187 . 1 424 U-box Gene Family AT1G49780 64.3 1.7e-151 532.7
Cec04g1242 . 1 407 U-box Gene Family AT5G64660 53.9 2.4e-121 432.6
Cec04g1242 . 1 407 U-box Gene Family AT5G09800 50.8 1.4e-105 380.2
Cec05g2899 . 1 454 U-box Gene Family AT3G49810 63.2 2.1e-155 545.8
Cec08g1724 . 1 454 U-box Gene Family AT3G49810 62.8 2.0e-153 539.3
Cec08g1724 . 1 454 U-box Gene Family AT5G65920 64.1 1.1e-153 540.0
Cec05g2899 . 1 454 U-box Gene Family AT5G65920 61.5 5.5e-148 521.2
Cec05g0177 . 1 872 U-box Gene Family AT2G45910 52.5 3.6e-233 805.1
Cec11g0176 . 47 769 U-box Gene Family AT2G19410 50.9 1.1e-210 730.3
Cec09g1985 . 1 551 U-box Gene Family AT5G40140 54.3 8.7e-95 344.7
Cec01g1494 . 29 498 U-box Gene Family AT5G40140 51.9 1.5e-54 211.1
Cec08g0964 . 26 834 U-box Gene Family AT1G76390 61.3 7.9e-270 926.8
Cec08g0964 . 35 834 U-box Gene Family AT1G20780 61.8 7.0e-279 956.8
Cec08g1778 . 1 782 U-box Gene Family AT1G27910 62.3 1.0e-266 916.4
Cec11g1438 . 1 767 U-box Gene Family AT1G27910 62.4 2.0e-262 902.1
Cec04g1448 . 438 1029 U-box Gene Family AT5G67530 73.8 2.4e-260 894.8
Cec05g0245 . 656 813 U-box Gene Family AT5G67530 52.5 3.1e-45 180.3
Cec10g1892 . 12 162 U-box Gene Family AT5G67530 50.3 9.2e-42 168.7
Cec01g0462 . 176 634 U-box Gene Family AT5G51270 59.0 3.2e-146 516.2
Cec05g0458 . 1 517 U-box Gene Family AT1G04510 74.0 3.4e-221 764.6
Cec05g0458 . 1 486 U-box Gene Family AT2G33340 73.4 1.4e-208 722.6
Cec07g0254 . 10 278 U-box Gene Family AT3G07370 66.9 4.9e-102 367.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013844 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 2 0 25