Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g2133 ATGGAGGAGGATAACGGTGGCGGCTCCTTTCGGAGTTTGATTGACTTGGTGAACGATGTAGCTTCAATCTCAGACTACAGGTACGCGGTCAGAAAGCAGTATTGTAATTTAGCAAGACGACTGAAGCTGTTGATCCCATTGTTTGAGGAGATGAGGGATATGAAGCAGCCGCTGCCGGGTCATACCGTGAAAGCTCTTGCTTCGTTGAAGGAAGCTCTGGAATCGACCAAGGAGTTGCTTAAACATGGGAGCGAGGGGAGCAAGATTTATCTGGCCTTGGAGAGAGAGCAAATTTTGAATCAATTTCACGAGGTGACAGCAAGACTAGAGCAAGCTCTGAATGACATTTCACATGAAGATCTTGACATATCTGATGAAGTTAAGGAACAGGTTGAGCTTGTTCTCTCTCAATTCAAAAGAGCTAGAGGAAGGAATGATACACAAGATGCTGAGCTGTATGTCAACCTCAACTCTCTCTATAACAACAGCAGAGACTCTGTTGATCCTTCTGTCTTGAAAGGACTGGCTGAGAAGTTGCAGCTGATTGATATAGCTGATCTTACTCAAGAGTCTCTTGATTTACATGAAATGGTTTCGGCTAGTGATGGAGATCCAGGGGGGAGATTTGAGAAAATGTCAATATTATTGAAGAAAATAAAAGATTTTATGCTAACTGAAAACCCTGAAATTGGTCTTTCTTCAAAAGAACAAAGTCATCCTCGCACTGGTGGAAAAGTGTCTGCTGGTAAGAAAGATATAGCGTCCCTTCACATACCTGAAGACTTTCGGTGCCCCATATCCCTGGATTTGATGAAAGATCCTGTCATTGTCTCCACAGGACAGACCTATGAACGTGCTTTCATTGAGAAGTGGCTGGCAGATGGACACTCAACATGCCCAAAAACTCAACAAGTTCTCACTAGCAAAATTCTTACACCAAATTATGTTTTACGTAGTCTCATAGCTCAATGGTGTGAGGTCAATGGAATTGAACCACCACAACGTTCCGGCAGTTCTCAGCCCAGTGAGTCGATGACTCCGGCCGAACGCTCTAAGTATGAAGCTCTACTCCACAAACTCACATCAGGTAACATTGAAGACAGACGAGCTGCTGCTGGTGAGATTCGCCTTCTAGCCAAACGCAATGCAAATAATCGTGTGGCCATTGCTGAAGCTGGTGCAATCCCTCTCCTTGTTGATCTCCTTTCAACAACAGACCCCCTCACTCAAGAACATGCTGTGACAGCATTGCTTAACCTTTCAATTTGTGACAATAATAAGAGAAGCATCATGTCCTGTAGGGCAGCGCCTGCCATAGTCCATGTGCTGAAGTGGGGGAGTATGGAAGCACGTGAAAATGCTGCTGCCACTCTTTTCAGTCTCTCTGTTGTAGACGAATATAAAATAATGATCGGCGCATCGGGAGCCATTCTGCCACTTATTGCACTACTCAATGAAGGTACTCAAAGGGGGAAGAAGGATGCTGCAACCGCTCTTTTCAACTTGTGTTTCTTCCAAGGGAACAAGATAAAGGCAGTCAGGGGTGGTGTTGTTTCCATTCTGATGCAGCTGTTGACGGAATCTAGAATAGGGATGGTAGATGAGGCCCTAGCAATATTAGCCATACTGGCTAGCAATTCTGAAGGGCGAGCTGCGATTGGAGCGGCCAAATCTGTCCCCATTTTAGTAAATCTCATTGGAACAGGATCCCCTAGGAACAGGGAAAATGCAGCTGCAGTTTTGGTGCATCTTTGCATGGGAGACAAACGACATCTTGTGGAAGCGAAGGAGCTCGGAGTGATTGGTTTGCTTATGGATTTGGCAGAAAATGGCACAGACCGAGGTAAGCGAAAAGCAACCCAATTGCTTGACCAAATAAACAGGTTTACAGAGCTGCAGAAAGAGGCTGAGGTTCAGTCTCAGTCTCAAACACAACTGTTATTACCACAACCTTCCGCAATTGGCAACGTCGAAAGCTGA 1980 45.25 MEEDNGGGSFRSLIDLVNDVASISDYRYAVRKQYCNLARRLKLLIPLFEEMRDMKQPLPGHTVKALASLKEALESTKELLKHGSEGSKIYLALEREQILNQFHEVTARLEQALNDISHEDLDISDEVKEQVELVLSQFKRARGRNDTQDAELYVNLNSLYNNSRDSVDPSVLKGLAEKLQLIDIADLTQESLDLHEMVSASDGDPGGRFEKMSILLKKIKDFMLTENPEIGLSSKEQSHPRTGGKVSAGKKDIASLHIPEDFRCPISLDLMKDPVIVSTGQTYERAFIEKWLADGHSTCPKTQQVLTSKILTPNYVLRSLIAQWCEVNGIEPPQRSGSSQPSESMTPAERSKYEALLHKLTSGNIEDRRAAAGEIRLLAKRNANNRVAIAEAGAIPLLVDLLSTTDPLTQEHAVTALLNLSICDNNKRSIMSCRAAPAIVHVLKWGSMEARENAAATLFSLSVVDEYKIMIGASGAILPLIALLNEGTQRGKKDAATALFNLCFFQGNKIKAVRGGVVSILMQLLTESRIGMVDEALAILAILASNSEGRAAIGAAKSVPILVNLIGTGSPRNRENAAAVLVHLCMGDKRHLVEAKELGVIGLLMDLAENGTDRGKRKATQLLDQINRFTELQKEAEVQSQSQTQLLLPQPSAIGNVES 659
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 38871217 38874860 + CePI673135_02g021330.1 Cec02g2133 197186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g2133 659 Pfam U-box domain 258 328 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec02g2133 659 CDD MLKL_NTD 31 139 - -
Cec02g2133 659 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec02g2133 659 SMART arm_5 423 463 IPR000225 GO:0005515(InterPro)
Cec02g2133 659 SMART arm_5 505 545 IPR000225 GO:0005515(InterPro)
Cec02g2133 659 SMART arm_5 464 504 IPR000225 GO:0005515(InterPro)
Cec02g2133 659 SMART arm_5 546 586 IPR000225 GO:0005515(InterPro)
Cec02g2133 659 SMART arm_5 382 422 IPR000225 GO:0005515(InterPro)
Cec02g2133 659 FunFam RING-type E3 ubiquitin transferase 8 119 - -
Cec02g2133 659 SMART Ubox_2 261 324 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec02g2133 659 Coils Coil 95 115 - -
Cec02g2133 659 SUPERFAMILY RING/U-box 252 332 - -
Cec02g2133 659 Pfam Armadillo/beta-catenin-like repeat 382 421 IPR000225 GO:0005515(InterPro)
Cec02g2133 659 Pfam Armadillo/beta-catenin-like repeat 546 585 IPR000225 GO:0005515(InterPro)
Cec02g2133 659 Pfam Armadillo/beta-catenin-like repeat 465 503 IPR000225 GO:0005515(InterPro)
Cec02g2133 659 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 393 431 IPR000225 GO:0005515(InterPro)
Cec02g2133 659 Pfam Mixed lineage kinase domain-like N-terminal domain 29 151 IPR054000 -
Cec02g2133 659 MobiDBLite consensus disorder prediction 331 350 - -
Cec02g2133 659 Gene3D - 529 648 IPR011989 -
Cec02g2133 659 Gene3D - 348 528 IPR011989 -
Cec02g2133 659 SUPERFAMILY ARM repeat 354 626 IPR016024 -
Cec02g2133 659 FunFam RING-type E3 ubiquitin transferase 337 632 - -
Cec02g2133 659 MobiDBLite consensus disorder prediction 640 659 - -
Cec02g2133 659 FunFam RING-type E3 ubiquitin transferase 257 331 - -
Cec02g2133 659 CDD RING-Ubox_PUB 259 311 IPR045210 -
Cec02g2133 659 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 255 331 IPR013083 -
Cec02g2133 659 Gene3D - 9 119 IPR036537 GO:0007166(InterPro)
Cec02g2133 659 PANTHER U BOX DOMAIN-CONTAINING 30 627 - -
Cec02g2133 659 MobiDBLite consensus disorder prediction 332 347 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1479 Cec-Chr1:29459134 Cec02g2133 Cec-Chr2:38871217 2.70E-49 dispersed
Cec02g2133 Cec-Chr2:38871217 Cec07g0695 Cec-Chr7:12291413 5.80E-61 dispersed
Cec02g1026 Cec-Chr2:16599482 Cec02g2133 Cec-Chr2:38871217 6.00E-87 transposed
Cec04g1850 Cec-Chr4:37125891 Cec02g2133 Cec-Chr2:38871217 4.40E-15 transposed
Cec05g2340 Cec-Chr5:34660502 Cec02g2133 Cec-Chr2:38871217 7.30E-122 transposed
Cec07g0255 Cec-Chr7:2505814 Cec02g2133 Cec-Chr2:38871217 6.90E-37 transposed
Cec07g0925 Cec-Chr7:22979692 Cec02g2133 Cec-Chr2:38871217 1.70E-23 transposed
Cec02g2133 Cec-Chr2:38871217 Cec03g0157 Cec-Chr3:1536262 8.60E-166 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g2133 K27628 - csv:101221150 1145.18