Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g2188 ATGTTTGATCTTAATCTCAATGTTGACTCGCCTGATGCCTCTCAGAATGAGAACTCCGTTGTGTTCTTTGAGAAGCTTCCTCAAGGCTCGGGGAACCAAATGGATGAGTCAGGAACTTCCAATTCTTCGATTGTCAATGCGGATACCTCCAGCAATGGCGGCGATGACGACTCGTGTTCCACACGCGCCGGTGGTGAGCTCTTCACGTTCAGCTTCGAGATATTGAAGGCTGGAAGCGCGAACGACGTTGTTACGAAGGAGCTTTTTCCAATAGGTGGAGCGCTGAATGCTGACTTCGGGATTCTTCAGGGGCATAACTCCGCCTCTTCTTCGTCAACTTCATCGAGGAAGAACTGGATCAACCTTGCGTTTGATCGAAGCGGGTCAGCAGGGGAGGGGAGAGTGGTTCAGCCGGTTCAGCCTCAGCCGGTGAAGAAGAGCAGGAGGGGACCGAGGTCTCGGAGCTCGCAGTACAGAGGCGTCACATTCTACCGGAGGACTGGGCGGTGGGAGTCTCATATCTGGGACTGTGGGAAGCAAGTCTATCTCGGTGGATTCGACACTGCACATTCTGCAGCAAGAGCATATGATCGAGCTGCTATCAAGTTCAGAGGGGTCGATGCTGACATTAATTTCAATCTTACTGATTATGAGGATGATCTGAAACAGATGAAGAATTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGCCAGAGTACTGGTTTCTCAAGAGGGAGCTCCAAATATAGAGGGGTTACACTGCACAAATGTGGCCGATGGGAAGCTAGAATGGGGCAGCTCCTTGGGAAAAAGGCTTATGACAAGGCAGCAATCAAATGTAATGGGCGGGAGGCAGTGACCAACTTTGAGCCTAGCACATACGGAGAGAGAATTTCTGAGGGCGGCAGTGAAGGTGGGTGGAACATGCTCGATTTGAATTTAGGGATTTCACCTCCCTCACTTAACAACTGTCCAAAGGATACTGAGGGGCATCTGCGGTTTCAATCTGGTCCTTGTTATGCTAACGACAGGAGCACAATGATGGAGAGCAATGCTGATGCAGCAGTTAGCGATCCACCTTTGAAAGGACCGGTAATGACATCAGAGCATGCTCCCTTATGGAATGGTTTACAAACTAGCTTCTTTCCCTCTGAGGAAATCGTGACAGAGAAGAGACTTGCATTAGGTTCATCCCAAGGAGTCACCCCCAACTGGGGATGGCAAATTCATAGCCAGGTTAATTCCACCCAAGTGCCACTGTTCTCTGCTGCAGCATCATCAGGATTCTCATTTTCAGCTACCCATTTCCCGGCTGCCATCCATCCACTGTGCCGTCCGGGCTCGACCGCCCATAACCTCCATTTCACTTCTGCCAAGGCTTCCCTCAACTCCCCTCAGTATCACCACCAGTTGAACCCACAACAGTGA 1431 50.31 MFDLNLNVDSPDASQNENSVVFFEKLPQGSGNQMDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFTFSFEILKAGSANDVVTKELFPIGGALNADFGILQGHNSASSSSTSSRKNWINLAFDRSGSAGEGRVVQPVQPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNLTDYEDDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKAYDKAAIKCNGREAVTNFEPSTYGERISEGGSEGGWNMLDLNLGISPPSLNNCPKDTEGHLRFQSGPCYANDRSTMMESNADAAVSDPPLKGPVMTSEHAPLWNGLQTSFFPSEEIVTEKRLALGSSQGVTPNWGWQIHSQVNSTQVPLFSAAASSGFSFSATHFPAAIHPLCRPGSTAHNLHFTSAKASLNSPQYHHQLNPQQ 476
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 39317021 39320882 - CePI673135_02g021880.1 Cec02g2188 197241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g2188 476 CDD AP2 157 212 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec02g2188 476 SMART rav1_2 157 219 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec02g2188 476 SMART rav1_2 249 297 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec02g2188 476 MobiDBLite consensus disorder prediction 131 158 - -
Cec02g2188 476 FunFam AP2-like ethylene-responsive transcription factor 156 215 - -
Cec02g2188 476 SUPERFAMILY DNA-binding domain 156 214 IPR016177 GO:0003677(InterPro)
Cec02g2188 476 Gene3D AP2/ERF domain 248 292 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec02g2188 476 Gene3D AP2/ERF domain 156 215 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec02g2188 476 SUPERFAMILY DNA-binding domain 248 292 IPR016177 GO:0003677(InterPro)
Cec02g2188 476 ProSiteProfiles AP2/ERF domain profile. 157 213 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec02g2188 476 CDD AP2 248 293 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec02g2188 476 Pfam AP2 domain 157 205 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec02g2188 476 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 66 318 - -
Cec02g2188 476 MobiDBLite consensus disorder prediction 28 58 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1459 Cec-Chr2:31986375 Cec02g2188 Cec-Chr2:39317021 1.40E-71 dispersed
Cec02g2188 Cec-Chr2:39317021 Cec04g1386 Cec-Chr4:33487867 1.80E-80 dispersed
Cec10g2067 Cec-Chr10:35404544 Cec02g2188 Cec-Chr2:39317021 2.30E-106 wgd
Cec02g2188 Cec-Chr2:39317021 Cec04g1020 Cec-Chr4:29793912 1.90E-85 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29124 PF00847 AP2 4.20E-10 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g2188 K09284 - csv:101222024 879.011