Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec02g2188 | ATGTTTGATCTTAATCTCAATGTTGACTCGCCTGATGCCTCTCAGAATGAGAACTCCGTTGTGTTCTTTGAGAAGCTTCCTCAAGGCTCGGGGAACCAAATGGATGAGTCAGGAACTTCCAATTCTTCGATTGTCAATGCGGATACCTCCAGCAATGGCGGCGATGACGACTCGTGTTCCACACGCGCCGGTGGTGAGCTCTTCACGTTCAGCTTCGAGATATTGAAGGCTGGAAGCGCGAACGACGTTGTTACGAAGGAGCTTTTTCCAATAGGTGGAGCGCTGAATGCTGACTTCGGGATTCTTCAGGGGCATAACTCCGCCTCTTCTTCGTCAACTTCATCGAGGAAGAACTGGATCAACCTTGCGTTTGATCGAAGCGGGTCAGCAGGGGAGGGGAGAGTGGTTCAGCCGGTTCAGCCTCAGCCGGTGAAGAAGAGCAGGAGGGGACCGAGGTCTCGGAGCTCGCAGTACAGAGGCGTCACATTCTACCGGAGGACTGGGCGGTGGGAGTCTCATATCTGGGACTGTGGGAAGCAAGTCTATCTCGGTGGATTCGACACTGCACATTCTGCAGCAAGAGCATATGATCGAGCTGCTATCAAGTTCAGAGGGGTCGATGCTGACATTAATTTCAATCTTACTGATTATGAGGATGATCTGAAACAGATGAAGAATTTAAGCAAGGAAGAGTTTGTTCACATACTTCGTCGCCAGAGTACTGGTTTCTCAAGAGGGAGCTCCAAATATAGAGGGGTTACACTGCACAAATGTGGCCGATGGGAAGCTAGAATGGGGCAGCTCCTTGGGAAAAAGGCTTATGACAAGGCAGCAATCAAATGTAATGGGCGGGAGGCAGTGACCAACTTTGAGCCTAGCACATACGGAGAGAGAATTTCTGAGGGCGGCAGTGAAGGTGGGTGGAACATGCTCGATTTGAATTTAGGGATTTCACCTCCCTCACTTAACAACTGTCCAAAGGATACTGAGGGGCATCTGCGGTTTCAATCTGGTCCTTGTTATGCTAACGACAGGAGCACAATGATGGAGAGCAATGCTGATGCAGCAGTTAGCGATCCACCTTTGAAAGGACCGGTAATGACATCAGAGCATGCTCCCTTATGGAATGGTTTACAAACTAGCTTCTTTCCCTCTGAGGAAATCGTGACAGAGAAGAGACTTGCATTAGGTTCATCCCAAGGAGTCACCCCCAACTGGGGATGGCAAATTCATAGCCAGGTTAATTCCACCCAAGTGCCACTGTTCTCTGCTGCAGCATCATCAGGATTCTCATTTTCAGCTACCCATTTCCCGGCTGCCATCCATCCACTGTGCCGTCCGGGCTCGACCGCCCATAACCTCCATTTCACTTCTGCCAAGGCTTCCCTCAACTCCCCTCAGTATCACCACCAGTTGAACCCACAACAGTGA | 1431 | 50.31 | MFDLNLNVDSPDASQNENSVVFFEKLPQGSGNQMDESGTSNSSIVNADTSSNGGDDDSCSTRAGGELFTFSFEILKAGSANDVVTKELFPIGGALNADFGILQGHNSASSSSTSSRKNWINLAFDRSGSAGEGRVVQPVQPQPVKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHSAARAYDRAAIKFRGVDADINFNLTDYEDDLKQMKNLSKEEFVHILRRQSTGFSRGSSKYRGVTLHKCGRWEARMGQLLGKKAYDKAAIKCNGREAVTNFEPSTYGERISEGGSEGGWNMLDLNLGISPPSLNNCPKDTEGHLRFQSGPCYANDRSTMMESNADAAVSDPPLKGPVMTSEHAPLWNGLQTSFFPSEEIVTEKRLALGSSQGVTPNWGWQIHSQVNSTQVPLFSAAASSGFSFSATHFPAAIHPLCRPGSTAHNLHFTSAKASLNSPQYHHQLNPQQ | 476 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 39317021 | 39320882 | - | CePI673135_02g021880.1 | Cec02g2188 | 197241 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec02g2188 | 476 | CDD | AP2 | 157 | 212 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec02g2188 | 476 | SMART | rav1_2 | 157 | 219 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec02g2188 | 476 | SMART | rav1_2 | 249 | 297 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec02g2188 | 476 | MobiDBLite | consensus disorder prediction | 131 | 158 | - | - | |
Cec02g2188 | 476 | FunFam | AP2-like ethylene-responsive transcription factor | 156 | 215 | - | - | |
Cec02g2188 | 476 | SUPERFAMILY | DNA-binding domain | 156 | 214 | IPR016177 | GO:0003677(InterPro) | |
Cec02g2188 | 476 | Gene3D | AP2/ERF domain | 248 | 292 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec02g2188 | 476 | Gene3D | AP2/ERF domain | 156 | 215 | IPR036955 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec02g2188 | 476 | SUPERFAMILY | DNA-binding domain | 248 | 292 | IPR016177 | GO:0003677(InterPro) | |
Cec02g2188 | 476 | ProSiteProfiles | AP2/ERF domain profile. | 157 | 213 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec02g2188 | 476 | CDD | AP2 | 248 | 293 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec02g2188 | 476 | Pfam | AP2 domain | 157 | 205 | IPR001471 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cec02g2188 | 476 | PANTHER | AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR | 66 | 318 | - | - | |
Cec02g2188 | 476 | MobiDBLite | consensus disorder prediction | 28 | 58 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec02g1459 | Cec-Chr2:31986375 | Cec02g2188 | Cec-Chr2:39317021 | 1.40E-71 | dispersed | |
Cec02g2188 | Cec-Chr2:39317021 | Cec04g1386 | Cec-Chr4:33487867 | 1.80E-80 | dispersed | |
Cec10g2067 | Cec-Chr10:35404544 | Cec02g2188 | Cec-Chr2:39317021 | 2.30E-106 | wgd | |
Cec02g2188 | Cec-Chr2:39317021 | Cec04g1020 | Cec-Chr4:29793912 | 1.90E-85 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
29124 | PF00847 | AP2 | 4.20E-10 | CL0081 | Cec | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec02g2188 | K09284 | - | csv:101222024 | 879.011 |