Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g2200 ATGGAAGGGAGTGATTCAATCGCCACCGTTTCATCAACTCCGCTATCTCAATCTCCTTCTTCTTCTTCTTCTCCGGCACCGCCGCCGCCCGTCGTTCTCAGTCCATGTGCGGCCTGCAAGATTTTGAGACGGCGATGTGCCGAACGATGTGTTTTGGCGCCTTATTTCCCTCCCACTGAGCCGGCGAAGTTCGCCATCGCTCATCGAGTTTTTGGCGCCAGCAATATCATCAAATTCTTGCAGGAACTGCCTGAATCTCAAAGGGCAGATGCAGTGAGCAGCTTGGTTTATGAAGCAAGTGCGAGAATTAGAGACCCTGTTTATGGATCAGCAGGGGCCATTTGCCAACTTCAAAAGCAAGTCAATGAGCTTCAAGCGCAGCTAGCCAAGGCGCAGGCTGAGGTTGTGAACATGCAATGCCAACAAGCCAATCTTGTGGCCTTTGTTTGCAGGGAATTGGCTCAGTCTCATCATCAGTCTTTTGATGATTTCAATGGCAGCCCTCATAATGGCTTATTATTCCAGAGCATCAGCCCAAGCTACTTTGATGATAGCAATGTAAACTCATTGTGGGAACCTCTTTGGACATGA 591 49.24 MEGSDSIATVSSTPLSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAERCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHHQSFDDFNGSPHNGLLFQSISPSYFDDSNVNSLWEPLWT 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 39452897 39454031 + CePI673135_02g022000.1 Cec02g2200 197253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g2200 196 ProSiteProfiles LOB domain profile. 34 135 IPR004883 -
Cec02g2200 196 Pfam Lateral organ boundaries (LOB) domain 35 132 IPR004883 -
Cec02g2200 196 Coils Coil 114 141 - -
Cec02g2200 196 MobiDBLite consensus disorder prediction 1 20 - -
Cec02g2200 196 MobiDBLite consensus disorder prediction 1 30 - -
Cec02g2200 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 34 156 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g2200 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1466 Cec-Chr2:32108398 Cec02g2200 Cec-Chr2:39452897 1.10E-51 dispersed
Cec02g2200 Cec-Chr2:39452897 Cec03g0239 Cec-Chr3:2671772 3.10E-55 dispersed
Cec02g2200 Cec-Chr2:39452897 Cec07g0514 Cec-Chr7:5931469 2.30E-34 transposed
Cec02g2200 Cec-Chr2:39452897 Cec02g1940 Cec-Chr2:37289655 2.30E-34 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec11g1157 . 1 218 AS2 family AT1G65620 66.4 1.7e-69 259.2
Cec02g1407 . 2 110 AS2 family AT1G65620 79.8 2.1e-46 182.6
Cec06g1923 . 59 234 AS2 family AT1G65620 54.0 2.1e-46 182.6
Cec10g1403 . 18 128 AS2 family AT1G65620 70.3 2.1e-43 172.6
Cec09g2038 . 1 117 AS2 family AT1G65620 69.2 1.1e-42 170.2
Cec01g1438 . 1 116 AS2 family AT1G65620 69.0 3.8e-40 161.8
Cec11g0629 . 9 135 AS2 family AT1G65620 55.1 1.1e-36 150.2
Cec02g1407 . 1 122 AS2 family AT5G66870 85.2 3.5e-56 215.7
Cec11g1157 . 5 112 AS2 family AT5G66870 77.8 1.2e-43 174.1
Cec06g1923 . 57 169 AS2 family AT5G66870 68.1 2.3e-39 159.8
Cec10g1403 . 22 128 AS2 family AT5G66870 68.2 3.0e-39 159.5
Cec01g1438 . 12 129 AS2 family AT5G66870 64.4 3.9e-39 159.1
Cec09g2038 . 1 121 AS2 family AT5G66870 62.8 6.6e-39 158.3
Cec02g1407 . 4 118 AS2 family AT2G23660 68.7 8.8e-44 174.5
Cec11g1157 . 6 112 AS2 family AT2G23660 69.2 7.7e-40 161.4
Cec06g1923 . 64 169 AS2 family AT2G23660 64.2 1.9e-38 156.8
Cec10g1403 . 22 138 AS2 family AT2G23660 58.1 2.1e-37 153.3
Cec01g1438 . 12 128 AS2 family AT2G23660 62.2 1.4e-36 150.6
Cec09g2038 . 4 127 AS2 family AT3G27650 79.4 6.3e-54 207.2
Cec10g1403 . 19 129 AS2 family AT3G27650 84.7 2.0e-52 202.2
Cec06g1923 . 60 170 AS2 family AT3G27650 78.4 2.0e-47 185.7
Cec01g1438 . 12 117 AS2 family AT3G27650 72.6 5.5e-42 167.5
Cec11g1157 . 3 112 AS2 family AT3G27650 68.2 9.4e-42 166.8
Cec02g1407 . 4 112 AS2 family AT3G27650 66.1 9.8e-39 156.8
Cec06g1923 . 59 169 AS2 family AT5G63090 93.7 4.2e-57 218.0
Cec10g1403 . 17 140 AS2 family AT5G63090 77.4 1.5e-51 199.5
Cec09g2038 . 1 113 AS2 family AT5G63090 86.0 1.3e-50 196.4
Cec01g1438 . 10 116 AS2 family AT5G63090 81.3 3.5e-48 188.3
Cec11g1157 . 3 122 AS2 family AT5G63090 70.8 2.1e-45 179.1
Cec02g1407 . 2 110 AS2 family AT5G63090 68.8 3.0e-39 158.7
Cec01g0916 . 16 143 AS2 family AT5G63090 59.4 3.3e-38 155.2
Cec02g1940 . 14 117 AS2 family AT5G63090 67.3 1.3e-37 153.3
Cec07g0514 . 4 106 AS2 family AT5G63090 69.9 1.3e-37 153.3
Cec11g0629 . 10 129 AS2 family AT5G63090 60.0 8.2e-37 150.6
Cec07g0514 . 3 114 AS2 family AT2G30130 92.0 2.6e-54 208.8
Cec02g2031 . 2 137 AS2 family AT2G30130 68.1 9.7e-49 190.3
Cec01g0916 . 11 117 AS2 family AT2G30130 77.6 1.7e-45 179.5
Cec02g1940 . 10 125 AS2 family AT2G30130 72.4 8.5e-45 177.2
Cec09g2359 . 21 122 AS2 family AT2G30130 73.5 8.2e-40 160.6
Cec06g1923 . 64 167 AS2 family AT2G30130 68.3 1.3e-37 153.3
Cec10g1403 . 23 135 AS2 family AT2G30130 61.9 8.5e-37 150.6
Cec11g1157 . 7 109 AS2 family AT2G30130 67.0 8.5e-37 150.6
Cec01g0916 . 4 172 AS2 family AT1G31320 74.3 2.7e-66 248.4
Cec02g1940 . 1 171 AS2 family AT1G31320 72.3 7.5e-61 230.3
Cec07g0514 . 2 132 AS2 family AT1G31320 66.4 3.7e-44 174.9
Cec09g2359 . 21 124 AS2 family AT1G31320 73.1 1.0e-41 166.8
Cec02g2031 . 6 122 AS2 family AT1G31320 65.8 8.6e-41 163.7
Cec06g1923 . 65 176 AS2 family AT1G31320 62.5 7.6e-37 150.6
Cec03g0239 . 34 202 AS2 family AT2G28500 55.2 5.4e-46 181.4
Cec02g1466 . 26 118 AS2 family AT2G28500 88.2 1.2e-42 170.2
Cec02g2200 . 31 196 AS2 family AT2G28500 53.3 1.6e-42 169.9
Cec03g0237 . 13 128 AS2 family AT2G28500 68.1 3.6e-42 168.7
Cec07g0514 . 5 117 AS2 family AT2G28500 64.6 1.6e-37 153.3
Cec02g1940 . 13 122 AS2 family AT2G28500 66.4 6.0e-37 151.4
Cec02g2200 . 4 196 AS2 family AT1G07900 60.9 4.9e-45 177.9
Cec02g1466 . 26 181 AS2 family AT1G07900 68.9 2.4e-44 175.6
Cec03g0239 . 28 202 AS2 family AT1G07900 56.8 4.1e-44 174.9
Cec03g0237 . 13 128 AS2 family AT1G07900 64.7 1.2e-38 156.8
Cec02g1940 . 6 171 AS2 family AT1G16530 57.1 2.3e-46 182.2
Cec01g0916 . 12 172 AS2 family AT1G16530 53.9 5.7e-42 167.5
Cec02g2031 . 2 131 AS2 family AT1G16530 58.5 1.5e-37 152.9
Cec07g0514 . 5 110 AS2 family AT1G16530 68.2 2.5e-37 152.1
Cec07g0553 . 1 157 AS2 family AT2G30340 66.5 9.6e-55 210.7
Cec11g0606 . 13 157 AS2 family AT2G30340 69.6 1.4e-53 206.8
Cec07g0553 . 32 157 AS2 family AT2G40470 82.5 5.5e-55 211.1
Cec11g0606 . 30 154 AS2 family AT2G40470 77.6 6.2e-51 197.6
Cec02g1940 . 11 122 AS2 family AT2G40470 65.2 2.2e-40 162.5
Cec01g0916 . 17 124 AS2 family AT2G40470 64.8 1.3e-37 153.3
Cec11g0629 . 1 161 AS2 family AT3G11090 60.7 7.0e-48 187.2
Cec07g0123 . 1 113 AS2 family AT2G42440 74.3 4.1e-44 175.3
Cec09g0783 . 9 118 AS2 family AT2G42440 71.8 3.2e-41 165.6
Cec07g0122 . 27 134 AS2 family AT2G42440 70.4 6.7e-39 157.9
Cec06g0038 . 29 138 AS2 family AT2G42440 65.2 2.8e-37 152.5
Cec09g0783 . 4 126 AS2 family AT3G58190 75.2 5.4e-48 188.0
Cec07g0123 . 4 115 AS2 family AT3G58190 79.5 7.8e-47 184.1
Cec07g0122 . 27 134 AS2 family AT3G58190 71.3 2.2e-41 166.0
Cec06g0038 . 29 127 AS2 family AT3G58190 74.7 5.4e-40 161.4
Cec07g0123 . 1 168 AS2 family AT2G31310 51.1 1.6e-40 162.9
Cec07g0122 . 27 237 AS2 family AT2G42430 54.7 2.3e-55 212.6
Cec06g0038 . 29 131 AS2 family AT2G42430 74.8 9.4e-41 164.1
Cec07g0123 . 3 94 AS2 family AT2G42430 80.4 6.7e-39 157.9
Cec09g0783 . 12 114 AS2 family AT2G42430 70.9 7.4e-38 154.5
Cec05g0256 . 47 151 AS2 family AT2G42430 66.7 1.7e-37 153.3
Cec06g0038 . 29 222 AS2 family AT4G00220 63.6 2.9e-60 228.8
Cec05g0256 . 49 212 AS2 family AT4G00220 54.2 3.2e-43 172.2
Cec06g0039 . 25 111 AS2 family AT4G00220 79.3 5.9e-37 151.4
Cec06g0038 . 29 240 AS2 family AT2G45420 69.0 2.9e-72 268.9
Cec05g0256 . 49 205 AS2 family AT2G45420 59.4 5.3e-50 194.9
Cec07g0122 . 28 130 AS2 family AT2G45420 77.7 7.0e-42 167.9
Cec09g0783 . 12 118 AS2 family AT2G45420 70.1 2.2e-40 162.9
Cec10g1600 . 37 126 AS2 family AT2G45420 80.0 1.0e-37 154.1
Cec06g0039 . 25 111 AS2 family AT2G45420 80.5 5.2e-37 151.8
Cec07g0123 . 7 95 AS2 family AT2G45420 76.4 1.1e-36 150.6
Cec10g1600 . 37 150 AS2 family AT3G03760 79.8 7.0e-45 177.9
Cec06g0038 . 29 130 AS2 family AT3G03760 80.4 2.3e-40 162.9
Cec07g0122 . 27 129 AS2 family AT3G03760 73.8 1.4e-37 153.7
Cec06g0038 . 29 139 AS2 family AT4G00210 73.0 1.4e-43 173.3
Cec05g0256 . 47 163 AS2 family AT4G00210 64.1 8.4e-41 164.1
Cec09g0783 . 12 116 AS2 family AT4G00210 65.7 3.3e-37 152.1
Cec06g0038 . 29 224 AS2 family AT2G45410 51.0 1.8e-47 186.0
Cec05g0256 . 46 168 AS2 family AT2G45410 63.7 5.1e-42 167.9
Cec06g0039 . 16 111 AS2 family AT2G45410 77.3 3.6e-40 161.8
Cec07g0122 . 28 130 AS2 family AT2G45410 67.0 1.7e-37 152.9
Cec07g0386 . 12 154 AS2 family AT5G06080 61.0 6.6e-44 174.1
Cec09g0066 . 31 138 AS2 family AT3G13850 75.0 1.4e-42 170.2
Cec05g1339 . 1 166 AS2 family AT1G68510 64.4 5.6e-59 224.6
Cec06g1686 . 1 159 AS2 family AT1G68510 61.8 1.1e-54 210.3
Cec05g2493 . 1 171 AS2 family AT1G68510 58.3 7.3e-51 197.6
Cec04g1437 . 1 104 AS2 family AT1G68510 64.4 7.6e-40 161.0
Cec05g2272 . 1 121 AS2 family AT1G68510 59.3 9.3e-38 154.1
Cec05g1339 . 1 302 AS2 family AT1G67100 50.2 2.2e-71 265.8
Cec06g1686 . 1 140 AS2 family AT1G67100 72.5 1.3e-60 229.9
Cec05g2493 . 1 132 AS2 family AT1G67100 68.6 5.1e-52 201.4
Cec04g1437 . 1 110 AS2 family AT1G67100 67.3 1.7e-44 176.4
Cec05g2272 . 1 110 AS2 family AT1G67100 62.7 6.4e-39 157.9
Cec05g1339 . 1 302 AS2 family AT3G02550 55.7 7.1e-79 290.8
Cec06g1686 . 1 163 AS2 family AT3G02550 69.5 5.0e-64 241.5
Cec05g2493 . 1 141 AS2 family AT3G02550 63.4 1.9e-47 186.4
Cec04g1437 . 1 136 AS2 family AT3G02550 55.1 2.9e-40 162.5
Cec04g1437 . 1 235 AS2 family AT5G67420 59.1 6.8e-71 264.2
Cec05g2272 . 1 117 AS2 family AT5G67420 70.1 1.5e-46 183.3
Cec05g1339 . 3 112 AS2 family AT5G67420 68.2 1.1e-44 177.2
Cec06g1686 . 3 112 AS2 family AT5G67420 61.8 2.1e-40 162.9
Cec05g2493 . 3 113 AS2 family AT5G67420 62.5 4.0e-39 158.7
Cec04g1437 . 1 234 AS2 family AT3G49940 60.9 3.9e-71 265.0
Cec05g1339 . 3 157 AS2 family AT3G49940 52.9 4.9e-45 178.3
Cec06g1686 . 3 112 AS2 family AT3G49940 62.7 1.6e-40 163.3
Cec05g2493 . 3 113 AS2 family AT3G49940 62.5 7.5e-38 154.5
Cec04g1437 . 1 235 AS2 family AT4G37540 57.1 8.8e-68 253.8
Cec05g1339 . 3 167 AS2 family AT4G37540 52.1 4.9e-42 168.3
Cec06g1686 . 3 113 AS2 family AT4G37540 63.1 4.6e-40 161.8
Cec05g2493 . 3 126 AS2 family AT4G37540 56.5 1.6e-37 153.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000542 3 3 2 4 5 3 5 3 3 3 3 3 5 4 3 5 3 4 5 3 4 5 3 3 4 4 2 3 4 5 109
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29126 PF03195 LOB 3.80E-41 No_clan Cec TF