Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g2200 ATGGAAGGGAGTGATTCAATCGCCACCGTTTCATCAACTCCGCTATCTCAATCTCCTTCTTCTTCTTCTTCTCCGGCACCGCCGCCGCCCGTCGTTCTCAGTCCATGTGCGGCCTGCAAGATTTTGAGACGGCGATGTGCCGAACGATGTGTTTTGGCGCCTTATTTCCCTCCCACTGAGCCGGCGAAGTTCGCCATCGCTCATCGAGTTTTTGGCGCCAGCAATATCATCAAATTCTTGCAGGAACTGCCTGAATCTCAAAGGGCAGATGCAGTGAGCAGCTTGGTTTATGAAGCAAGTGCGAGAATTAGAGACCCTGTTTATGGATCAGCAGGGGCCATTTGCCAACTTCAAAAGCAAGTCAATGAGCTTCAAGCGCAGCTAGCCAAGGCGCAGGCTGAGGTTGTGAACATGCAATGCCAACAAGCCAATCTTGTGGCCTTTGTTTGCAGGGAATTGGCTCAGTCTCATCATCAGTCTTTTGATGATTTCAATGGCAGCCCTCATAATGGCTTATTATTCCAGAGCATCAGCCCAAGCTACTTTGATGATAGCAATGTAAACTCATTGTGGGAACCTCTTTGGACATGA 591 49.24 MEGSDSIATVSSTPLSQSPSSSSSPAPPPPVVLSPCAACKILRRRCAERCVLAPYFPPTEPAKFAIAHRVFGASNIIKFLQELPESQRADAVSSLVYEASARIRDPVYGSAGAICQLQKQVNELQAQLAKAQAEVVNMQCQQANLVAFVCRELAQSHHQSFDDFNGSPHNGLLFQSISPSYFDDSNVNSLWEPLWT 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 39452897 39454031 + CePI673135_02g022000.1 Cec02g2200 197253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g2200 196 ProSiteProfiles LOB domain profile. 34 135 IPR004883 -
Cec02g2200 196 Pfam Lateral organ boundaries (LOB) domain 35 132 IPR004883 -
Cec02g2200 196 Coils Coil 114 141 - -
Cec02g2200 196 MobiDBLite consensus disorder prediction 1 20 - -
Cec02g2200 196 MobiDBLite consensus disorder prediction 1 30 - -
Cec02g2200 196 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 34 156 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g1466 Cec-Chr2:32108398 Cec02g2200 Cec-Chr2:39452897 1.10E-51 dispersed
Cec02g2200 Cec-Chr2:39452897 Cec03g0239 Cec-Chr3:2671772 3.10E-55 dispersed
Cec02g2200 Cec-Chr2:39452897 Cec07g0514 Cec-Chr7:5931469 2.30E-34 transposed
Cec02g2200 Cec-Chr2:39452897 Cec02g1940 Cec-Chr2:37289655 2.30E-34 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29126 PF03195 LOB 3.80E-41 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g2200 - - - 0.0