Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g2211 ATGCAGAAAAGAGTTGTACTCATACTGCTTACTGCTAACTGCTTTATTGGTATCCCTTCAGGATATGTTTTCAGCATTCTTTACCATGATTTGACCTCATTTCCAGTTTTCTACAGCTTTGGTCTTCTTGTCACCTTATTGCCAATTGATCACTCCGCGCCATTCCCCTTTCTTGTTTTAGTTCTGTTGGGAAGCTTAGCAATAGGACACTTGAATGAGGTGGGGAAGAATGCATATTGCTTTGGAAATTGTGAAGAGGGTCTTTGCAATTGTTGCTTATCCTCTTCAACTTCTTCTTGTTCCTCAAATTCATCGCCAACGCCCGCCTCTTCTTCAACCTATTTGGAGCTTTGGCATGCTTGTGCTGGTCCTCTCACCTCATTGCCCAAGAAAGGAAATGTAGTTGTCTATTTCCCACAAGGTCACTTGGAACAAATTGCCTCAGCCTCTCCCTTTTCCCCCATGGAGATGCGCACTTTTGACCTTCAGCCACAGATCCTCTGCAGGGTCATCAATGTCCACCTACTTGCCAATAAGGAGAATGATGAGGTCTATACACAGCTTACTCTCCTTCCCTTGCCAGAGTTAGTAGGCACTGGTCTAGAGGGCAAAGAGCTGGAGGAATTGGCGTTGAATGGGGCTGATGGAGATGGGAGTGGAGGGTCGCCTACTAGATCTACACCTCACATGTTCTGCAAAACACTCACAGCGTCTGACACGAGCACCCATGGAGGATTCTCTGTTCCTCGCAGAGCTGCTGAAGACTGTTTCCCTCCTCTGGATTACACTCAGCTTAGGCCATCTCAAGAGCTAATAGCCAAGGACCTGCATGGCGTGGAGTGGAGATTTAAACATATTTACAGAGGTCAACCTAGGCGGCATCTGCTCACTACTGGATGGAGTATTTTTGTAAGCCAAAAGAATCTTACTTCTGGGGATGCAGTGCTGTTTTTAAGGGGTGAAAATGGAGAGTTAAGGTTGGGAATAAGGCGAGCTGTTCGGCCTAGAAATGGTCTTCCTGTTTCAATTGTTGGCAGCCAAAATTCTTGTGCGAACGATCTTGCTCGTGTGGTGAAAGCAATATCCACCAAGAGCACATTTGATGTGTTTTATAATCCAAGGGCATATCATGCACAATTTGTTATATCTTGTCAGAAGTATGTGAAGAGCATCAATAATCCGGTGACTGTAGGCACAAGATTCAAAATGAGATTTGAGATGGATGATTCGCCAGAAAGAAGGTTTAATGGTGTAGTTGTCGGAATTGGTGACATGGATCCCTTTAGATGGCCGAACTCAAAGTGGAGATGCTTAACGGTCCGATGGGATAAAGACAGTGATCATCAAGAACGTGTTTCCCCCTGGGAGATTGATCCTTCTGTTTCTCTCCCACCCTTGAGTGTTCAGTCGTCTCCAAGACTGAAGAAGCTGAGGACTAGTCTGCAGGCAGCCCCTCCTAATAACGCCTTTACTGGGAGGGGCGGTTTTATGGACTTTGAGGATTCAATTAGATCCTCTAAGGTCTTGCAAGGTCAAGAAAATATAGGTGTCGTATCACCCTTTTATGGATGTGATACTGCAAAACGTTCACTGGAGTTTGATGTGCGATCTTCTGCACAACAAAACCAAGTGTCAGGTGGAGTTGAAAAACTCAATATAGGTGATTATGTAAAGGTTCATGCGAACTCTTCTTTCACAGGCTTTATGGAATCTGATAGATTTCTGAAGGTCTTGCAAGGTCAAGAAATATGCTCATTGAGGCCACCAACTAGAAAACCAGAATATAGTTTAGGTGTTTGGGGGAAGTTCAATCTCAGTGACAACTCTTTTAACACATTTCAATCACCAAACTCCAATTTTTATCACATGGCGTCTAATGGTGCCCAAAACATGTATTTCCCTCGTAGTGAAATGTACAGTACTGGCCAAGCGGCCATGATGCGCTCAAATGATAGCAACTTTCCAAGAGAGAATGCCTTGTTCAACCCATCTGCTGTTGGTGCTAGTGTTATCAGGACTAAAATGGAAAGGACTAATCGTTCACTTGATCAGGAGTCTCTACATCTAGTGTCTGCTCCTCCAACTTTAGGGTCGAATATGAGGAATTCAAAGGATGAAAATGTGAGTGAGAACCCAACTGGCTGTAAACTTTTTGGCTTTTCATTGACTACGGAAACTGCTACAAACATGCAAAGTTCAGGAAAGAGAAGTTGTACCAAGGTTCACAAACAAGGCAGCCTGGTGGGAAGAGCTATTGATCTCTCTAGGCTGAATGGCTATCCCGATCTGATTTCTGAACTGGAGCGGTTGTTTAGCATGGAAGGTCTCTTAAAAGATCCTGATAAAGGATGGCGAGTCTTGTACACTGACAACGAAAATGACGTAATGGTTGTTGGGGATTATCCATGGCGTGACTTCTGTGACGCGGTTTCCAAAATCCATATACACACTCAAGAAGAAGTGGAAAAGATGACAAATGGAGTGATCAGTGATGATACTCAAAGCTGCTTAGACCAGGCTCCTTTATGTATGGAAGCATCAAAATCCTCTTCAGTGGGCCAACCTGATTCTCCTCCAACTACTCTCGAAGTCGGTAGCTTTGCTGCCATGAACGGTGTCATATAG 2625 44.27 MQKRVVLILLTANCFIGIPSGYVFSILYHDLTSFPVFYSFGLLVTLLPIDHSAPFPFLVLVLLGSLAIGHLNEVGKNAYCFGNCEEGLCNCCLSSSTSSCSSNSSPTPASSSTYLELWHACAGPLTSLPKKGNVVVYFPQGHLEQIASASPFSPMEMRTFDLQPQILCRVINVHLLANKENDEVYTQLTLLPLPELVGTGLEGKELEELALNGADGDGSGGSPTRSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYTQLRPSQELIAKDLHGVEWRFKHIYRGQPRRHLLTTGWSIFVSQKNLTSGDAVLFLRGENGELRLGIRRAVRPRNGLPVSIVGSQNSCANDLARVVKAISTKSTFDVFYNPRAYHAQFVISCQKYVKSINNPVTVGTRFKMRFEMDDSPERRFNGVVVGIGDMDPFRWPNSKWRCLTVRWDKDSDHQERVSPWEIDPSVSLPPLSVQSSPRLKKLRTSLQAAPPNNAFTGRGGFMDFEDSIRSSKVLQGQENIGVVSPFYGCDTAKRSLEFDVRSSAQQNQVSGGVEKLNIGDYVKVHANSSFTGFMESDRFLKVLQGQEICSLRPPTRKPEYSLGVWGKFNLSDNSFNTFQSPNSNFYHMASNGAQNMYFPRSEMYSTGQAAMMRSNDSNFPRENALFNPSAVGASVIRTKMERTNRSLDQESLHLVSAPPTLGSNMRNSKDENVSENPTGCKLFGFSLTTETATNMQSSGKRSCTKVHKQGSLVGRAIDLSRLNGYPDLISELERLFSMEGLLKDPDKGWRVLYTDNENDVMVVGDYPWRDFCDAVSKIHIHTQEEVEKMTNGVISDDTQSCLDQAPLCMEASKSSSVGQPDSPPTTLEVGSFAAMNGVI 874
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 39533675 39541477 - CePI673135_02g022110.1 Cec02g2211 197264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g2211 874 MobiDBLite consensus disorder prediction 691 710 - -
Cec02g2211 874 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 113 826 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cec02g2211 874 SUPERFAMILY DNA-binding pseudobarrel domain 225 342 IPR015300 -
Cec02g2211 874 Pfam B3 DNA binding domain 231 332 IPR003340 GO:0003677(InterPro)
Cec02g2211 874 Gene3D - 395 464 - -
Cec02g2211 874 Pfam Auxin response factor 358 438 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cec02g2211 874 ProSiteProfiles B3 DNA-binding domain profile. 231 333 IPR003340 GO:0003677(InterPro)
Cec02g2211 874 Gene3D - 732 825 - -
Cec02g2211 874 FunFam Auxin response factor 394 464 - -
Cec02g2211 874 SMART B3_2 231 333 IPR003340 GO:0003677(InterPro)
Cec02g2211 874 Gene3D - 229 333 IPR015300 -
Cec02g2211 874 ProSiteProfiles PB1 domain profile. 736 818 IPR053793 -
Cec02g2211 874 SUPERFAMILY CAD & PB1 domains 738 815 - -
Cec02g2211 874 CDD B3_DNA 229 331 IPR003340 GO:0003677(InterPro)
Cec02g2211 874 FunFam Auxin response factor 229 333 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2211 Cec-Chr2:39533675 Cec06g2027 Cec-Chr6:33396158 2.10E-135 dispersed
Cec02g2211 Cec-Chr2:39533675 Cec09g0941 Cec-Chr9:8919860 7.50E-125 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29127 PF02362 B3 7.90E-21 CL0405 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g2211 K14486 - csv:101212503 1481.85