Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g2231 ATGAAAGAAGCGGAGAAAAATTTAGATCCCCAACTATGGCATGCCTGTGCAGGAGGCATGGTCCAGATGCCTGCGATTAACTCCAAGGTTTTCTACTTCCCTCAGGGTCACGCCGAGCACGCTCAGGCCACCGTCGATTTCACCTCTTCACTCAGAATCCCGCCGCTTATTCCTTGTCGAGTGCTCGCCGTTAAGTTCTTGGCTGACCATGAAACGGATGAGGTTTTTGCGAATATAAGAATGGTTCCACTGGCGAATATCGACCTCAATTTCGAAGAAGAGGGGGGTTTGGGGAGTAATGGGTCTGAGAATAATATGGAGAAACCGGCTTCTTTTGCCAAGACGTTGACTCAATCCGATGCCAACAACGGCGGTGGATTCTCGGTTCCGAGGTACTGTGCGGAGACGATATTTCCGCGGCTGGATTACACGGCGGATCCGCCGGTTCAGACGGTGATTGCCAAGGACGTTCACGGCGAGGTTTGGAAGTTCCGCCATATTTACAGGGGGACGCCTCGCCGGCATTTGTTGACTACTGGGTGGAGTACTTTTGTGAATCAGAAGAAGCTCGTCGCCGGCGACTCGATTGTTTTTCTGAGATCCAAAAATGGCGACCTCTGTGTCGGAATCCGGCGAGCCAAAAGGGCAATTGGGTGTGCCGCCGATCACCCTTACGGATGGAATCCCGGCGGTGGAAATTGCATCCCACCTTATGGTGGATTGACGATGTTTTTAAGAGACGAGGACAACAAGTTGAGTAGAAAAGGGTCTTTGAGTTCCAGTGGTGGTAGTGGGAATTTGAGGGGAAAAGGTAAAGTGAGGCCGGAATCAGTTATGGAAGCGGCGGCGCTTGCGGCGAGTGGACAGCCGTTTGAGGTGGTTTATTACCCACGTGCCAGCACGCCGGAGTTCTGTGTGAAAGCCTCATCGGTTCGAGCCGCCATGAGGATCCAATGGTGCTCTGGTATGAGGTTCAAGATGCCATTTGAGACTGAGGATTCTTCTCGGATTAGTTGGTTTATGGGCACCATTTCTTCCGTTCAAGTTGCTGATCCTATCCGTTGGCCTAATTCTCCATGGCGGCTTCTTCAGGTGACATGGGATGAACCAGATTTGCTACAGAATGTGAAGCGTGTTAGCCCGTGGTTAGTTGAACTGGTATCGAACATACCTGTCATTCAACTATCACCGTTTTCTCCACCGAGAAAGAAGTTTCGACTACCACAACACCCAGACTTTCCCCTCGACACTCAATTCCCACTGTCGTCATTTTCGAGCAATACCCTTAGGCCAAGCAGTCCCATGTGTTGTTTATCTGATAACACTTCTGTAGGCATACAGGGAGCCAGGCATACTCAATTTGGAATATCTTTATCGGATTTCCATCTCAACAAACTGCAATTAGGGCTGGTTCCATCCAGTTTTCAGCAGCTTGATTTTCACTCTAGGATTTCCAATAGATCAGTTACAGACCACAGAGAGAGCAGCAGTAAGAACTCATCGGCGTTGCTAAACGGGGAAAAGACTGGTCCAAAGTTGGAAAGATCTGATTCGGTGAAGAAGCATCAGTTTTTACTCTTTGGTCAACCTATACTCACTGAACAGCAAATCACTTGCAGCTCTTCTGGTGACATTCGTTCACCTCAAACAGACAAAGGCTCCTTGGATGTGAATCTGGAGAGAGTGAAGTTTCTTTCCGATGGTGCAGGATCCACTTTCAAGCAGCAAATTTCTCCAAACAAGTCACCAGGAGTAGGATTTCCATGGTACCAAGGTTATCAAGCCACTGAACTTGGCCTAGACATCGGTCACTGCAAGGTATTTATGGAGTCAGAAGATGTGGGCCGGACACTCAACCTTTCAGTAATCGGCTCATATGAAGAACTATACAGGAGGCTCGCGAATATGTTTGGAATGGAAAAACCAGACATTCTTAGCCATGTACTGTACCAAGATGCAACAGGTGCTGTAAAACAAGCTGGAGATAAACCATTCAGTGATTTCATCAAAACAGCTAGAAGACTGACGATACTAACGGACTCGGGTTCGGACAAGTTGGGAAGGACAATGATGGATGGAATGAGAAGTGGTGAAAGTGGATTAGATGCTTCAAACAAGACTGGCCCCTTGAGCATATTTGCCTAG 2145 48.25 MKEAEKNLDPQLWHACAGGMVQMPAINSKVFYFPQGHAEHAQATVDFTSSLRIPPLIPCRVLAVKFLADHETDEVFANIRMVPLANIDLNFEEEGGLGSNGSENNMEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYTADPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLRSKNGDLCVGIRRAKRAIGCAADHPYGWNPGGGNCIPPYGGLTMFLRDEDNKLSRKGSLSSSGGSGNLRGKGKVRPESVMEAAALAASGQPFEVVYYPRASTPEFCVKASSVRAAMRIQWCSGMRFKMPFETEDSSRISWFMGTISSVQVADPIRWPNSPWRLLQVTWDEPDLLQNVKRVSPWLVELVSNIPVIQLSPFSPPRKKFRLPQHPDFPLDTQFPLSSFSSNTLRPSSPMCCLSDNTSVGIQGARHTQFGISLSDFHLNKLQLGLVPSSFQQLDFHSRISNRSVTDHRESSSKNSSALLNGEKTGPKLERSDSVKKHQFLLFGQPILTEQQITCSSSGDIRSPQTDKGSLDVNLERVKFLSDGAGSTFKQQISPNKSPGVGFPWYQGYQATELGLDIGHCKVFMESEDVGRTLNLSVIGSYEELYRRLANMFGMEKPDILSHVLYQDATGAVKQAGDKPFSDFIKTARRLTILTDSGSDKLGRTMMDGMRSGESGLDASNKTGPLSIFA 714
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 39724274 39727195 - CePI673135_02g022310.1 Cec02g2231 197284
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g2231 714 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 686 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cec02g2231 714 FunFam Auxin response factor 110 214 - -
Cec02g2231 714 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677(InterPro)
Cec02g2231 714 MobiDBLite consensus disorder prediction 487 516 - -
Cec02g2231 714 Pfam Auxin response factor 281 364 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Cec02g2231 714 SUPERFAMILY DNA-binding pseudobarrel domain 106 216 IPR015300 -
Cec02g2231 714 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677(InterPro)
Cec02g2231 714 SMART B3_2 112 214 IPR003340 GO:0003677(InterPro)
Cec02g2231 714 Gene3D - 602 687 - -
Cec02g2231 714 MobiDBLite consensus disorder prediction 252 272 - -
Cec02g2231 714 CDD B3_DNA 111 212 IPR003340 GO:0003677(InterPro)
Cec02g2231 714 Gene3D - 319 391 - -
Cec02g2231 714 Gene3D - 110 214 IPR015300 -
Cec02g2231 714 ProSiteProfiles PB1 domain profile. 602 682 IPR053793 -
Cec02g2231 714 FunFam Auxin response factor 319 392 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0127 Cec-Chr1:1163092 Cec02g2231 Cec-Chr2:39724274 9.60E-10 dispersed
Cec02g2231 Cec-Chr2:39724274 Cec08g0786 Cec-Chr8:19629432 3.60E-210 dispersed
Cec08g1114 Cec-Chr8:23045001 Cec02g2231 Cec-Chr2:39724274 2.10E-96 transposed
Cec02g2231 Cec-Chr2:39724274 Cec04g1047 Cec-Chr4:30034202 4.10E-262 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29131 PF02362 B3 1.40E-21 CL0405 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g2231 K14486 - csv:101216500 1356.66