Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g2234 ATGTCTATTTCATTGAACATTTCAAAGCCCATTTCCCCATTTCATTCAAATTCTGAGTTTCAACTCCTTATTTCGGCTACAACAACAACAACAACCCCTTCTCTTTATGCTTTGAAACAGGTTAACTCCATTAGAACTGCAGCCAAAGTTTTCATTTGGGAAGATCTTTATGGCTTATGGTTCCAAGACGATCTTGAATCATCTGCCCTGCCTACTATCAATGGTGGTGGTGTGACAAAGATCATATACAACATTGATGGCACACAAATACCGGAATCGAGCGGCAAGAGAACTTCGGCTTCTAGGAAGTCTGGAAGATCCCTGAGAGCTAAAGTTTTGTCTAGAGTTTTCTCAGAGGATTATGAGAGAGTACAAAGAAAAATATTGGATCCTAGGGGACAAGTCATAAGGCGATGGAATAAGATATTTTTAGTTGCTTGTTTAGTCTCTTTGTTTGTAGACCCTCTTTTCTTTTACTTGCCTGTGATCAGGGATGAGGTGTGCATCGATATAGGAGTAGGTCTTGAAGTCGTCCTCACAACTATAAGATCAATAGCTGATGTTTTCTACACAATTCAGATTTTCATTAAGTTTCGTACAGCTTATGTTGCGCCCTCTTCTCGTGTATTTGGGAGAGGAGAGCTTGTGATAGATCCTTTTAAGATAGCAATAAGGTATCTACGTTATGGTTTCTGGATTGATCTCATTGCAGCCGTGCCAGTTCCCCAGGTACTGATCTGGATTGTAATCCCCAACATTAGTGGTTCAACAATGACAAACACTAAGAACTTCCTAAGGTTCTTTCTCATATTCCAGTACCTCCCAAGGCTTTTTCTCATATTTCCTCTCTCAACACAAATTGTTAAGGCCACTGGACTTGTGACACAAACAGCATGGGCTGGAGCTGCTTATAACCTGATTCTTTATATGTTGGCAAGCCATGTTTTAGGAGCCTGCTGGTACCTTCTTTCAATTGAGCGACAAGAAGCATGCTGGAGAAGACTTTGTATGTTTGACAAATCTTGTAAAGATGGATTCTTCGACTGTCATAAGGTCGATGACCCTCAAAGGGACTCGTGGTTTAATATGAGCAACATTAAAAGCTCATGCAATCCAAGTGGTTCCTTTTATCAATTTGGTATATATGGTGATGCAATAACTTTCCATGTCACAACCTCACCATTTTTCAACAAGTACTTCTACTGTCTTTGGTGGGGCCTGAAAAATCTTAGCTCCTTAGGACAAAATCTTGCCACAAGCACTTTTGTTGGGGAAATAATTTTTGCCATTATTGTGGCAACTCTTGGACTGGTTCTGTTTGCATTGCTCATTGGTAATATGCAGAAATACCTCCAATCAACAACTGTTCGATTAGAAGAGTGGAGAATAAGGAGAACTGATACAGAACAATGGATGCATCACAGGCAACTACCTCCAGAGCTCAGACAATCTGTCCGCAGATATGATCAGTATAAGTGGGTAGCAACTCGAGGAGTCGATGAAGAACTGCTGCTTAGAAGCCTTCCCTTGGATCTCCGAAGAGACATAAAACGTCACCTTTGCCTTGACCTCGTTCGAAGGGTTCCATTGTTTGATCAAATGGATGAAAGAATGCTAGATGCAATATGCGAGAGACTTAAACCTGCCTTGAGCACAGAAGGCACATATCTCGTGCGAGAAGGCGACCCAGTCAATGAAATGTTATTCATAATCAGAGGTCATCTCGACTCGTACACCACTAATGGTGGTAGAACCGGGTTTTTCAACTCTTGTCGTATTGGCCCCGGTGATTTCTGTGGTGAGGAGCTGCTGACTTGGGCTCTCGACCCTCGGCCAAGTGTTGTACTTCCTTCTTCCACTCGAACGGTCAAAGCCATCTCTGAGGTAGAAGCATTTGCTCTCATAGCAGAGGACTTGAAATTTGTATCCTCCCAGTTCAGAAGACTCCACAGCAAACAACTGAGACACAAGTTCCGATTCTACTCGCATCAATGGCGAACGTGGGCTGCATGCTTTGTTCAAGCAGCATGGCGGAGATATAAGAGACGAAAAGAGCGAGCTGAGCTCAGAGCTAGAGAGAACTATCCGGCTACCAAAGTTGAGTCCCCACTTTCACCACCACCGACATCGAACTTGGATTCACGTTCAGGAAACGCTAGAAGGGGATTGAATAAGCGTTGTGTGTCGGATGCTGGGGTCGTAAGCTCGTTGCAGAAGCCAGAAGAGCCCGACTTCTCCATTGTTGAGGAATAA 2253 43.19 MSISLNISKPISPFHSNSEFQLLISATTTTTTPSLYALKQVNSIRTAAKVFIWEDLYGLWFQDDLESSALPTINGGGVTKIIYNIDGTQIPESSGKRTSASRKSGRSLRAKVLSRVFSEDYERVQRKILDPRGQVIRRWNKIFLVACLVSLFVDPLFFYLPVIRDEVCIDIGVGLEVVLTTIRSIADVFYTIQIFIKFRTAYVAPSSRVFGRGELVIDPFKIAIRYLRYGFWIDLIAAVPVPQVLIWIVIPNISGSTMTNTKNFLRFFLIFQYLPRLFLIFPLSTQIVKATGLVTQTAWAGAAYNLILYMLASHVLGACWYLLSIERQEACWRRLCMFDKSCKDGFFDCHKVDDPQRDSWFNMSNIKSSCNPSGSFYQFGIYGDAITFHVTTSPFFNKYFYCLWWGLKNLSSLGQNLATSTFVGEIIFAIIVATLGLVLFALLIGNMQKYLQSTTVRLEEWRIRRTDTEQWMHHRQLPPELRQSVRRYDQYKWVATRGVDEELLLRSLPLDLRRDIKRHLCLDLVRRVPLFDQMDERMLDAICERLKPALSTEGTYLVREGDPVNEMLFIIRGHLDSYTTNGGRTGFFNSCRIGPGDFCGEELLTWALDPRPSVVLPSSTRTVKAISEVEAFALIAEDLKFVSSQFRRLHSKQLRHKFRFYSHQWRTWAACFVQAAWRRYKRRKERAELRARENYPATKVESPLSPPPTSNLDSRSGNARRGLNKRCVSDAGVVSSLQKPEEPDFSIVEE 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 39774418 39778410 - CePI673135_02g022340.1 Cec02g2234 197287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g2234 750 SMART cnmp_10 530 661 IPR000595 -
Cec02g2234 750 FunFam Cyclic nucleotide-gated ion channel 1 457 521 - -
Cec02g2234 750 Gene3D - 137 454 - -
Cec02g2234 750 ProSiteProfiles cAMP/cGMP binding motif profile. 530 627 IPR000595 -
Cec02g2234 750 Gene3D Helix hairpin bin 457 521 - -
Cec02g2234 750 MobiDBLite consensus disorder prediction 691 722 - -
Cec02g2234 750 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 105 695 - -
Cec02g2234 750 Pfam Cyclic nucleotide-binding domain 553 613 IPR000595 -
Cec02g2234 750 SUPERFAMILY cAMP-binding domain-like 460 655 IPR018490 -
Cec02g2234 750 PRINTS EAG/ELK/ERG potassium channel family signature 493 500 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cec02g2234 750 PRINTS EAG/ELK/ERG potassium channel family signature 194 203 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cec02g2234 750 PRINTS EAG/ELK/ERG potassium channel family signature 399 416 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cec02g2234 750 PRINTS EAG/ELK/ERG potassium channel family signature 311 321 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cec02g2234 750 PRINTS EAG/ELK/ERG potassium channel family signature 443 452 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cec02g2234 750 PRINTS EAG/ELK/ERG potassium channel family signature 425 436 IPR003938 GO:0005249(InterPro)|GO:0006813(InterPro)|GO:0016020(InterPro)
Cec02g2234 750 Gene3D Jelly Rolls 528 648 IPR014710 -
Cec02g2234 750 SUPERFAMILY Voltage-gated potassium channels 130 452 - -
Cec02g2234 750 MobiDBLite consensus disorder prediction 704 718 - -
Cec02g2234 750 CDD CAP_ED 530 661 IPR000595 -
Cec02g2234 750 FunFam Cyclic nucleotide-gated ion channel 1 528 646 - -
Cec02g2234 750 Pfam Ion transport protein 138 457 IPR005821 GO:0005216(InterPro)|GO:0006811(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0049 Cec-Chr1:410925 Cec02g2234 Cec-Chr2:39774418 4.70E-186 dispersed
Cec02g2234 Cec-Chr2:39774418 Cec04g1044 Cec-Chr4:29986672 2.50E-214 dispersed
Cec02g2234 Cec-Chr2:39774418 Cec10g1452 Cec-Chr10:28866671 1.70E-202 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g2234 K05391 - csv:101210775 1345.49