Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g2271 ATGGAGCAAATTGGGAGGCATTTAATGACGAACATAAGCGATCAATTTGAGCTCCAAGATTTCATCCATGGCGACAACTTGGATCAATATGTGAATCTGATTCGTGGAGGGAACGAAAATTCGATATTCAATAACTTCGATCTCGATTTCATGAACGGTTGCTTGGTGGAGAATCGTTTGGATCCAAGCCCTGAATTCATTGTAGATTCGAATATGTTGATGAATAATTCTGATCCCAATTCTCTGTTTAGTACATTGGAGAGTTTCAATGGCATCATGAAAGAAGTTGAAAATGAAGATGAAGATGAAGATGACACTTCTGTAGAGAATTCTTCTTTCACAACCTCAAAGAAACCTAAGGTCGATCGATCAAGAACTTTGATTTCTGAACGAAGGAGAAGAGGAAGAATGAAGGAAAAGCTTTATGCATTGCGTTCATTGGTTCCAAATATAACCAAGATGGACAAGGCTTCTATTGTTGGGGATGCAGTCTTATATGTGAAAGAGCTACAAATGCAAGCCAAGAAGCTCAAATCAGAGATATCAGTTTTGGAATCTTCAATCAACCAAACACAAATTATTGATAAAGATCAAAACCAAAAGAAGATTATTCAAACTTCACATCCTGACCAATTCCTCCCCATCAAAATAATTCAGTTGGATGTGTTTCAAGTGGAGGAAAGAGGATTTTATTTGAGGTTAGTTTGCAAGATGGGTGAAAGAGTAGCTATGTCTCTTTACAAAGTTCTTGAATCCCTCACTAGCTTCGTTATTCAAAGCTCTAACTTGGCCTCTGCTTCAGATAGATTCATTCTCACCGCTACAATTAATGTGCGAGATTGTGAGGTGGACATGAACTTGCCAAATTTAAAGCTTTGGCTAACTGGGGCACTTCTTAACCATGGATTTGAGTTTTAA 918 37.8 MEQIGRHLMTNISDQFELQDFIHGDNLDQYVNLIRGGNENSIFNNFDLDFMNGCLVENRLDPSPEFIVDSNMLMNNSDPNSLFSTLESFNGIMKEVENEDEDEDDTSVENSSFTTSKKPKVDRSRTLISERRRRGRMKEKLYALRSLVPNITKMDKASIVGDAVLYVKELQMQAKKLKSEISVLESSINQTQIIDKDQNQKKIIQTSHPDQFLPIKIIQLDVFQVEERGFYLRLVCKMGERVAMSLYKVLESLTSFVIQSSNLASASDRFILTATINVRDCEVDMNLPNLKLWLTGALLNHGFEF 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 40060324 40062363 + CePI673135_02g022710.1 Cec02g2271 197324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g2271 305 Coils Coil 167 187 - -
Cec02g2271 305 SMART finulus 127 176 IPR011598 GO:0046983(InterPro)
Cec02g2271 305 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 121 170 IPR011598 GO:0046983(InterPro)
Cec02g2271 305 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 98 303 IPR051358 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cec02g2271 305 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 122 189 IPR036638 GO:0046983(InterPro)
Cec02g2271 305 MobiDBLite consensus disorder prediction 97 125 - -
Cec02g2271 305 Gene3D - 119 197 IPR036638 GO:0046983(InterPro)
Cec02g2271 305 Pfam Helix-loop-helix DNA-binding domain 126 171 IPR011598 GO:0046983(InterPro)
Cec02g2271 305 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 117 187 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2271 Cec-Chr2:40060324 Cec05g2764 Cec-Chr5:38087012 3.40E-16 dispersed
Cec02g2271 Cec-Chr2:40060324 Cec11g1209 Cec-Chr11:25188406 5.30E-17 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29134 PF00010 HLH 2.50E-09 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g2271 K26214 - csv:101213681 492.656