Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g2358 ATGAGAGATCCAGTCACAATCTCCACCGGCATCACTTACGATCGTCCCAACATCGAAAAATGGCTTTTTTCTTGCAATAAAACAACTTGCCCCATAACCAAACAATCCTTATCATCCGATCTTGAATTATTAACCCCAAATCACACTCTTCGCCGTTTGATTCAAGCTTGGTGTACACTGAATGCTTCTCATGGAATTGAAAGAATTCCAACTCCAAAATCTCCTATTGACAAAACCCATATTGCCAGAATCCTCAAACAAGCTCAAAATTTCCCCAATTTCAACCACAAATGTCTCCTTGAACTTAAGGCTATCGTCTTGGAGAGTGAAAGAAATCGCAACCTCTTGGCTCAATCCGTTGAGGCTTTTGATTTTCTAGCTTTGGTTATTAAGAGTGGCGGTAGTAATAATATTGGTTCTATTGAATTAGCGGTGGAAATTCTCTTTCACATCAGATCCTGCCAAACCCATCTCAAGAATCTTGTAAATAGTGATGCTAACTTCATTAACTCTCTTACTGTTGTCCTTCAACATGGAAATTGCCAATGTAGAGCCCATGCGGTAATGTTGCTCAAATCAAGCTTGGAACTTGCTGATCCAATTCGGTTGATGAGTATTGAGAGGGAACTTCTAAGTGAAATTGTGCGTGTGATTCATGATCACATATCTCATCAAGCTTCTAAATCGGCGTTGAAGATTCTTGCAGAGGTGAGTCCGTGGGGAAGGAACCGAGTGAAGGCAGTCGAGGGTGGCGCGGTTCAAGTGTTGGTGGAGTTGCTTTTGAACTCGCCCGAGAGGCGCTGGTCGGAGCTAGGGTTGGTGGTTTTGGATCAGCTTTGTGGGTGCGCAGAAGGACGGGAGAAGCTCGTGGAACATGGAGCTGGGGTTGCGGTCGTGTCTAAGAAGATACTTAGGGTTTCGGCGATGGCGAGCGATCGAGCAGTGAGGATTTTGTCATCAATTTGTCGGTTTTCAGCATCAGTGAAGGTGGTTCAAGAAATGTTGGAGGTTGGGGTGGTGGCAAAGTTGTGCTTGGTTTTGCAAATGGATTGTAGTTTGAAGACAAGGGAGAAGGCAAGAGATATACTAAAGTTGCATTCTAGGGTTTGGAGTAACTCTTCATGTATTCCTCCACATTTGTTGTCTGCTTATCCATCGTCTTGA 1164 43.9 MRDPVTISTGITYDRPNIEKWLFSCNKTTCPITKQSLSSDLELLTPNHTLRRLIQAWCTLNASHGIERIPTPKSPIDKTHIARILKQAQNFPNFNHKCLLELKAIVLESERNRNLLAQSVEAFDFLALVIKSGGSNNIGSIELAVEILFHIRSCQTHLKNLVNSDANFINSLTVVLQHGNCQCRAHAVMLLKSSLELADPIRLMSIERELLSEIVRVIHDHISHQASKSALKILAEVSPWGRNRVKAVEGGAVQVLVELLLNSPERRWSELGLVVLDQLCGCAEGREKLVEHGAGVAVVSKKILRVSAMASDRAVRILSSICRFSASVKVVQEMLEVGVVAKLCLVLQMDCSLKTREKARDILKLHSRVWSNSSCIPPHLLSAYPSS 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 40813868 40815031 - CePI673135_02g023580.1 Cec02g2358 197411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g2358 387 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 68 IPR013083 -
Cec02g2358 387 SUPERFAMILY ARM repeat 135 365 IPR016024 -
Cec02g2358 387 SUPERFAMILY RING/U-box 1 64 - -
Cec02g2358 387 PANTHER WDSAM1 PROTEIN 1 383 IPR045185 GO:0061630(InterPro)
Cec02g2358 387 Gene3D - 97 364 IPR011989 -
Cec02g2358 387 ProSiteProfiles U-box domain profile. 1 64 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec02g2358 387 Pfam U-box domain 1 59 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec02g2358 387 SMART Ubox_2 1 57 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec02g2358 387 CDD RING-Ubox_PUB 1 40 IPR045210 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2358 Cec-Chr2:40813868 Cec04g0725 Cec-Chr4:26416301 3.50E-98 dispersed
Cec10g1844 Cec-Chr10:33283467 Cec02g2358 Cec-Chr2:40813868 2.00E-96 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g2358 - - - 0.0