Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g2367 ATGTCACTGGACATGATGGCATCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCAACAGCATGTTCACACTTGTGACTGTGAGATGTGGCCATTGTTCAAATCTGTTGTCTGTAAACATGGGAGCTTCTCTTCAAGTTGTTCCTCCTCAAGATTCCCAACAGGGTCATAAACAGCAGCAGGTGAATGCTGGGGATTCAAGTAAGGACCGAGCTTCTTCTTCTTCTTCTTCTTCTTCTAAATGCACTAAAATTGGCTCTCTTGATTCTGCTGAACGTGACCAACATAGAATCCCTCCTATTCGCCCACCAGAGAAAAGACAGCGAGTTCCTTCGGCGTATAATAGGTTCATCAAAGAGGAAATCCAGAGGATTAAGGCTAAGAATCCTGACATAAGCCACAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCATATTCACTTTGGGCTGAAGCTGGATGGAAATAAGCAAACAAAATAA 525 43.05 MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSQQGHKQQQVNAGDSSKDRASSSSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTK 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 40915706 40921019 - CePI673135_02g023670.1 Cec02g2367 197420

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g2367 174 SUPERFAMILY HMG-box 110 158 IPR036910 -
Cec02g2367 174 Gene3D High mobility group box domain 110 161 IPR036910 -
Cec02g2367 174 PANTHER PROTEIN YABBY 6-RELATED 6 172 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010158(PANTHER)|GO:0045165(PANTHER)
Cec02g2367 174 FunFam axial regulator YABBY 5-like 103 161 - -
Cec02g2367 174 MobiDBLite consensus disorder prediction 58 96 - -
Cec02g2367 174 CDD HMG-box_SF 119 155 - -
Cec02g2367 174 MobiDBLite consensus disorder prediction 58 121 - -
Cec02g2367 174 Pfam YABBY protein 7 165 IPR006780 GO:0007275(InterPro)
Cec02g2367 174 MobiDBLite consensus disorder prediction 97 114 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g2367 K25796 - - csv:101222154 324.324
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0381 Cec-Chr1:3962653 Cec02g2367 Cec-Chr2:40915706 1.20E-43 dispersed
Cec02g2367 Cec-Chr2:40915706 Cec06g1293 Cec-Chr6:26175656 2.40E-46 dispersed
Cec02g2367 Cec-Chr2:40915706 Cec11g0318 Cec-Chr11:3430874 1.50E-48 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g2590 . 3 171 C2C2-YABBY Transcription Factor Family AT1G69180 54.7 1.9e-46 182.6
Cec05g2609 . 3 171 C2C2-YABBY Transcription Factor Family AT1G69180 54.7 1.9e-46 182.6
Cec01g0381 . 95 255 C2C2-YABBY Transcription Factor Family AT2G45190 58.6 2.0e-42 169.1
Cec02g2367 . 1 174 C2C2-YABBY Transcription Factor Family AT1G08465 65.9 1.1e-54 209.9
Cec01g0381 . 51 245 C2C2-YABBY Transcription Factor Family AT1G08465 51.8 2.0e-43 172.6
Cec06g1293 . 6 180 C2C2-YABBY Transcription Factor Family AT1G08465 54.1 3.7e-42 168.3
Cec10g0303 . 18 189 C2C2-YABBY Transcription Factor Family AT1G08465 53.5 1.3e-39 159.8
Cec01g0381 . 62 254 C2C2-YABBY Transcription Factor Family AT4G00180 55.0 1.2e-49 193.4
Cec10g0303 . 29 189 C2C2-YABBY Transcription Factor Family AT4G00180 54.9 4.1e-37 151.8
Cec05g2773 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 53.8 1.9e-39 159.8
Cec06g1293 . 8 176 C2C2-YABBY Transcription Factor Family AT2G26580 70.4 2.9e-62 235.0
Cec11g0318 . 8 171 C2C2-YABBY Transcription Factor Family AT2G26580 70.7 5.5e-61 230.7
Cec02g2367 . 1 174 C2C2-YABBY Transcription Factor Family AT2G26580 59.2 1.1e-48 189.9
Cec01g0381 . 53 217 C2C2-YABBY Transcription Factor Family AT2G26580 54.4 6.1e-44 174.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004363 1 4 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 1 2 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29145 PF04690 YABBY 3.50E-75 CL0114 Cec TF