Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g2367 ATGTCACTGGACATGATGGCATCAGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTTTAGCGGTAAGTGTTCCATGCAACAGCATGTTCACACTTGTGACTGTGAGATGTGGCCATTGTTCAAATCTGTTGTCTGTAAACATGGGAGCTTCTCTTCAAGTTGTTCCTCCTCAAGATTCCCAACAGGGTCATAAACAGCAGCAGGTGAATGCTGGGGATTCAAGTAAGGACCGAGCTTCTTCTTCTTCTTCTTCTTCTTCTAAATGCACTAAAATTGGCTCTCTTGATTCTGCTGAACGTGACCAACATAGAATCCCTCCTATTCGCCCACCAGAGAAAAGACAGCGAGTTCCTTCGGCGTATAATAGGTTCATCAAAGAGGAAATCCAGAGGATTAAGGCTAAGAATCCTGACATAAGCCACAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCATATTCACTTTGGGCTGAAGCTGGATGGAAATAAGCAAACAAAATAA 525 43.05 MSLDMMASERVCYVHCNFCNTILAVSVPCNSMFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSQQGHKQQQVNAGDSSKDRASSSSSSSSKCTKIGSLDSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQTK 174
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 40915706 40921019 - CePI673135_02g023670.1 Cec02g2367 197420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g2367 174 SUPERFAMILY HMG-box 110 158 IPR036910 -
Cec02g2367 174 Gene3D High mobility group box domain 110 161 IPR036910 -
Cec02g2367 174 PANTHER PROTEIN YABBY 6-RELATED 6 172 IPR006780 GO:0005634(PANTHER)|GO:0007275(InterPro)|GO:0010158(PANTHER)|GO:0045165(PANTHER)
Cec02g2367 174 FunFam axial regulator YABBY 5-like 103 161 - -
Cec02g2367 174 MobiDBLite consensus disorder prediction 58 96 - -
Cec02g2367 174 CDD HMG-box_SF 119 155 - -
Cec02g2367 174 MobiDBLite consensus disorder prediction 58 121 - -
Cec02g2367 174 Pfam YABBY protein 7 165 IPR006780 GO:0007275(InterPro)
Cec02g2367 174 MobiDBLite consensus disorder prediction 97 114 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0381 Cec-Chr1:3962653 Cec02g2367 Cec-Chr2:40915706 1.20E-43 dispersed
Cec02g2367 Cec-Chr2:40915706 Cec06g1293 Cec-Chr6:26175656 2.40E-46 dispersed
Cec02g2367 Cec-Chr2:40915706 Cec11g0318 Cec-Chr11:3430874 1.50E-48 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29145 PF04690 YABBY 3.50E-75 CL0114 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g2367 K25796 - csv:101222154 324.324