Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g2368 ATGTTCTTAAAAAATTTTTGTACGACATCCGGCCTTCACCCGCCAGAATCCTCGAGCCATTGCAATCTCCTTCTAGCTTCCAAGGCACGGAAGTTGCCGGCGATCTTCGACCAAGACGAACCGAAAGAGCCCAGTCGAACGGTGAACTTGACAGTGGAGTGGCGTTTCTTGCCTTTTGCACTCCGCCTTGCATTCTACAATGGTGAGTTAGGGTTTTCGGCGGATATTAGAAAATGGTTCATGAAAGCACACGATAAAGAGAACGGCAGTGGATCAAAGAAAGCAAAACCTGCTCCAAGCAACTTAGGGAAATCCGCTGCAGCTGAACTACAGTCCGGGAAAACAGGGCCGAGTGGTGGAGAAAGTACTGGCAGACGGATAACTAGCAAGTATTTTGCATCAGAAAAGCATAAGGACAAGGATACAAAAGAAACAGAGGAACCCCCAATCAAACAAAAGTCTCCACAGGATCCTAAGGAATCTCCAGCCAAAAGAAAGTTTCAAATGGATAATGAGGGTTCACCAAAAGCTTCACCTTTAAAAAAATCAAACAAAATTGATGACAATGACGATGATGCTGTTTTTTCTAGTTCTAGAAAGAACATGTCTGAAGTCACTCCCAACAAAAAGTTGAAGAGTGGTTCTGGAAAGGGAATTACACAGAAACCTTTAGAAATTGAAGCGAGTGATGATGAGGAAACTAAGGGCACCGATTCTTCTCTGAAGCCTAGTGGAAGAGGTAGGGGAGGAAGGGGTTCATCTGCTGCAACCGGTGGTGGTAGAGGCAGAGGTGGTGGGCGAGGTGGATTTATGAATTTTGGGGAAAGGAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTTCAGACTGCTTAGCCGGTTTAACTTTTGTAATTAGTGGAACCCTTGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCACGGTGGCCGAGTAACTGGATCTGTCAGCAAAAAAACAAATTATCTACTATGTGATGAAGATATTGGTGGCCGAAAATCTTCCAAAGCAAAAGAGCTGGGAACCGGTTTTCTCACTGAGGATGGCTTATTTGACATGATCCGTGCATCAGGCCAAAAAGCTCCTCCAAGGCAAGATCCTAAAAAATCTGTGGTTAAGTCCTCTGTGGAATCTCCGACAGAGAAAAATTTCCAGAAAGTACAAGCAAAGCCCCACAAGGATTTGACTGCTAGTGCTTCACCTGCTAAGCAAAAAAGCCAAACAGCTGAATTCTCTAACCTAACATGGACCGAAAAATATAGGCCAAAGGTTCCAAATGACATTATAGGGAATCAGTCGCTGGTCAAACAACTTCATGATTGGTTGGCACATTGGAACAAAAACTTCCTAGATGTTGGAAGCAAAAAGAAGGTTAAAAAGCTCAATGATTCTGGTGCCAAAAAAGCTGTCTTGTTATGTGGAGGTCCTGGCATAGGTAAAACTACATCCGCTAAGTTGGTTAGCCAGATGCTTGGTTTTGAGGCTATAGAGGTAAACGCCAGCGACAATCGAGGTAAATCAGATGCCAAAATTCAAAAGGGAATTGGTGGAAGCAATGCAAATTCTATAAAGGAGCTTATCAGCAATGAATCACTGCACTTCAGAATGGATCAGCCAAAACATCCCAAAACTGTGTTGATCATGGATGAGGTAGATGGAATGTCTGCTGGAGATAGGGGTGGAGTTGCTGATCTGATTGCAAGCATTAAAATGTCCAAAATTCCAATTATCTGCATCTGTAATGACCGTTACAGCCAGAAGCTGAAAAGCCTTGTGAACTACTGTCTTATTCTCAGCTTTAGGAAACCTACAAAACAACAGATGGCAAAACGATTGATTCAAGTCGCAAATGCAGAAGGCCTTCAAGTTAACGAGATTGCTCTTGAGGAACTTGCAGAAAGAGTAAATGGGGACATGCGTATGGCACTAAATCAGTTGCAGTACCTGAGTCTGTCTATGCCAGTTATTAAGTATGATGATATTCGCCAACGGCTTCTGGGCAGCATGAAAGATGAAGACATCTCACCATTCACTGCTGTTGATAAGCTGTTTGGTTTCAATTCTGGGAAGTTAAGGATGGATGAAAGGATTGACCTCAGCATGAGTGATCTTGATTTAGTCCCTCTTCTTATTCAGGAAAATTATATTAATTACAGGCCAAGCGCTGTTAGTAAGGATGACAATGGGATCAAACGGATGGATTTGATTGCCCGTACAGCTGAATCTATTGCAGATGGGGATATAATCAATGTACAGATTCGAAGGCATCGACAGTGGCAACTCTCTCAAAGTAGTTGTATTGCTTCTTGTGTAATCCCAGCTTCATTATTGCATGGGCAAAGAGAAACGCTTGAGCAGGGAGAGCGTAATTTTAATAGATTTGGTGCATGGCTGGGAAAAAATTCAACATTTGGAAAAAATATGAGGCTTTTGGAGGATTTGCACGTTCACATTCTTGCTTCTCGCGAATCCTGCTCAGGGAGGGAACACCTAAGAGTTGAGAACCTTACTCTATTTCTAAAGAGGTTGACTGAGCCACTACACACGCTGCCTAAGGATGAAGCTGTTAAAATGGTGGTCGAATTTATGAGTCTATATTCAATCAGTCAGGAGGATTTTGATACTGTTCTTGAGTTGTCAAAATTTCAGGGTCGTAAGAATCCATTGGATGGTGTAACCCCCGCAGTCAAAGCTGCTCTGACAAAGGCATACAAAGAAGTAAGCAAGACACACATGGTGCGGGCCGCAGATCTTATTACGCTTCCTGGAATGAAAAAAGCCCCTAAGAAGCGAATTGCAGCGATTCTAGAACCAACTGAGGATGCAGTTGAAGGTGCTGTTGGAGACACATTGGCAGAAAGTGACGATGAAAACTCTTTGGACAATGAGGACGCAGAAGACGCCACAAACGGTGAGAAGCTGCAATTGGAACTTCAAAGCTTGAATAAGAAAGGAATGCAAGTGCAATTGGATTTGAAGGGTGTGGAAAATTCAAGTGCGACGAAATCTGGTGGCAGAGGACGAGGAGGTAGAAGTTCTCAGGCTTCAGAGAAGAAAGGTGGTCGAGGTTCAGAAATGAGACCAAGTCTTCGCCATGGAGCGGTCGACATTTGGGATGATGATTCACCCAACGGACGAGACTGGTTTTTGTAG 3192 43.52 MFLKNFCTTSGLHPPESSSHCNLLLASKARKLPAIFDQDEPKEPSRTVNLTVEWRFLPFALRLAFYNGELGFSADIRKWFMKAHDKENGSGSKKAKPAPSNLGKSAAAELQSGKTGPSGGESTGRRITSKYFASEKHKDKDTKETEEPPIKQKSPQDPKESPAKRKFQMDNEGSPKASPLKKSNKIDDNDDDAVFSSSRKNMSEVTPNKKLKSGSGKGITQKPLEIEASDDEETKGTDSSLKPSGRGRGGRGSSAATGGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGASDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTGFLTEDGLFDMIRASGQKAPPRQDPKKSVVKSSVESPTEKNFQKVQAKPHKDLTASASPAKQKSQTAEFSNLTWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNKNFLDVGSKKKVKKLNDSGAKKAVLLCGGPGIGKTTSAKLVSQMLGFEAIEVNASDNRGKSDAKIQKGIGGSNANSIKELISNESLHFRMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLILSFRKPTKQQMAKRLIQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYLSLSMPVIKYDDIRQRLLGSMKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDLDLVPLLIQENYINYRPSAVSKDDNGIKRMDLIARTAESIADGDIINVQIRRHRQWQLSQSSCIASCVIPASLLHGQRETLEQGERNFNRFGAWLGKNSTFGKNMRLLEDLHVHILASRESCSGREHLRVENLTLFLKRLTEPLHTLPKDEAVKMVVEFMSLYSISQEDFDTVLELSKFQGRKNPLDGVTPAVKAALTKAYKEVSKTHMVRAADLITLPGMKKAPKKRIAAILEPTEDAVEGAVGDTLAESDDENSLDNEDAEDATNGEKLQLELQSLNKKGMQVQLDLKGVENSSATKSGGRGRGGRSSQASEKKGGRGSEMRPSLRHGAVDIWDDDSPNGRDWFL 1063
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 40939185 40953397 + CePI673135_02g023680.1 Cec02g2368 197421

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g2368 1063 MobiDBLite consensus disorder prediction 371 423 - -
Cec02g2368 1063 MobiDBLite consensus disorder prediction 1025 1039 - -
Cec02g2368 1063 Gene3D BRCT domain 267 369 IPR036420 -
Cec02g2368 1063 SMART AAA_5 479 617 IPR003593 GO:0016887(InterPro)
Cec02g2368 1063 MobiDBLite consensus disorder prediction 274 289 - -
Cec02g2368 1063 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 427 676 IPR027417 -
Cec02g2368 1063 MobiDBLite consensus disorder prediction 1004 1023 - -
Cec02g2368 1063 SUPERFAMILY BRCT domain 290 369 IPR036420 -
Cec02g2368 1063 CDD HLD_clamp_RFC 616 674 IPR047854 -
Cec02g2368 1063 SUPERFAMILY post-AAA+ oligomerization domain-like 687 832 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Cec02g2368 1063 CDD AAA 468 616 - -
Cec02g2368 1063 MobiDBLite consensus disorder prediction 198 215 - -
Cec02g2368 1063 Pfam BRCA1 C Terminus (BRCT) domain 292 367 IPR001357 -
Cec02g2368 1063 FunFam Replication factor C subunit 1 427 615 - -
Cec02g2368 1063 FunFam Replication factor C subunit 1 688 797 - -
Cec02g2368 1063 PIRSF RFC1 72 1019 IPR012178 GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)
Cec02g2368 1063 Pfam ATPase family associated with various cellular activities (AAA) 483 595 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cec02g2368 1063 Gene3D - 688 798 - -
Cec02g2368 1063 SMART BRCT_7 292 370 IPR001357 -
Cec02g2368 1063 MobiDBLite consensus disorder prediction 105 129 - -
Cec02g2368 1063 Gene3D - 616 686 - -
Cec02g2368 1063 CDD BRCT_RFC1 290 368 - -
Cec02g2368 1063 Gene3D - 427 615 IPR027417 -
Cec02g2368 1063 MobiDBLite consensus disorder prediction 181 197 - -
Cec02g2368 1063 ProSiteProfiles BRCT domain profile. 290 368 IPR001357 -
Cec02g2368 1063 FunFam Replication factor C subunit 1 616 687 - -
Cec02g2368 1063 FunFam Replication factor C subunit 1 266 369 - -
Cec02g2368 1063 MobiDBLite consensus disorder prediction 224 239 - -
Cec02g2368 1063 MobiDBLite consensus disorder prediction 130 171 - -
Cec02g2368 1063 MobiDBLite consensus disorder prediction 86 290 - -
Cec02g2368 1063 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 139 999 - GO:0003677(PANTHER)|GO:0005634(PANTHER)
Cec02g2368 1063 MobiDBLite consensus disorder prediction 1045 1063 - -
Cec02g2368 1063 Pfam Replication factor RFC1 C terminal domain 756 918 IPR013725 GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)
Cec02g2368 1063 MobiDBLite consensus disorder prediction 1004 1063 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g2368 K10754 - - csv:101204361 1665.2
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2368 Cec-Chr2:40939185 Cec05g0399 Cec-Chr5:3268872 5.50E-21 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec08g0257 . 105 657 Core DNA Replication Machinery Family AT4G14700 65.9 2.0e-212 736.1
Cec08g0257 . 105 660 Core DNA Replication Machinery Family AT4G12620 67.7 9.8e-220 760.4
Cec08g1624 . 65 425 Core DNA Replication Machinery Family AT2G37560 64.8 5.6e-140 494.2
Cec07g0530 . 9 410 Core DNA Replication Machinery Family AT2G01120 64.3 1.5e-150 529.6
Cec06g0376 . 3 531 Core DNA Replication Machinery Family AT4G29910 58.0 1.5e-171 599.7
Cec11g0910 . 1 283 Core DNA Replication Machinery Family AT1G26840 66.1 6.5e-94 340.9
Cec09g2365 . 68 863 Core DNA Replication Machinery Family AT1G79150 58.8 1.0e-243 840.1
Cec10g1313 . 8 940 Core DNA Replication Machinery Family AT1G44900 75.5 0.0e+00 1352.8
Cec04g2153 . 128 702 Core DNA Replication Machinery Family AT5G46280 81.0 8.0e-269 922.9
Cec02g0506 . 192 1036 Core DNA Replication Machinery Family AT2G16440 75.9 0.0e+00 1147.5
Cec11g0370 . 1 735 Core DNA Replication Machinery Family AT2G07690 78.4 0.0e+00 1111.7
Cec04g2312 . 7 835 Core DNA Replication Machinery Family AT5G44635 71.6 0.0e+00 1173.3
Cec09g0509 . 4 722 Core DNA Replication Machinery Family AT4G02060 85.3 0.0e+00 1220.3
Cec02g2065 . 55 512 Core DNA Replication Machinery Family AT2G29680 61.4 6.7e-158 554.3
Cec02g2065 . 37 482 Core DNA Replication Machinery Family AT1G07270 58.8 1.5e-143 506.5
Cec09g0868 . 1 593 Core DNA Replication Machinery Family AT3G25100 76.2 3.3e-257 884.4
Cec10g2063 . 12 783 Core DNA Replication Machinery Family AT3G09660 73.8 0.0e+00 1109.4
Cec09g1700 . 22 420 Core DNA Replication Machinery Family AT2G14050 85.2 4.6e-196 681.4
Cec09g1698 . 9 242 Core DNA Replication Machinery Family AT2G14050 67.9 1.7e-86 317.4
Cec02g1251 . 1926 2304 Core DNA Replication Machinery Family AT2G20980 56.2 6.5e-108 387.9
Cec09g0268 . 1 192 Core DNA Replication Machinery Family AT1G80190 67.5 1.0e-72 270.0
Cec11g0642 . 5 188 Core DNA Replication Machinery Family AT1G19080 68.5 1.9e-70 262.3
Cec11g0642 . 5 188 Core DNA Replication Machinery Family AT3G55490 68.5 1.9e-70 262.3
Cec05g0169 . 15 164 Core DNA Replication Machinery Family AT5G49010 65.3 1.1e-49 193.4
Cec02g1303 . 9 1536 Core DNA Replication Machinery Family AT5G67100 60.4 0.0e+00 1744.6
Cec01g1709 . 118 740 Core DNA Replication Machinery Family AT1G67630 60.5 2.1e-214 742.3
Cec06g0212 . 1 447 Core DNA Replication Machinery Family AT1G67320 64.0 2.9e-182 635.2
Cec08g0101 . 196 639 Core DNA Replication Machinery Family AT5G41880 65.0 2.2e-176 615.5
Cec04g1199 . 1 1086 Core DNA Replication Machinery Family AT5G63960 80.7 0.0e+00 1797.7
Cec10g1767 . 1 438 Core DNA Replication Machinery Family AT2G42120 75.6 1.3e-205 712.6
Cec06g0212 . 1 447 Core DNA Replication Machinery Family AT1G67320 64.0 2.9e-182 635.2
Cec01g0547 . 1 127 Core DNA Replication Machinery Family AT1G09815 61.5 4.9e-38 154.1
Cec02g2314 . 1 2095 Core DNA Replication Machinery Family AT1G08260 71.6 0.0e+00 2988.0
Cec09g2157 . 83 2096 Core DNA Replication Machinery Family AT1G08260 68.2 0.0e+00 2788.4
Cec02g2314 . 25 2202 Core DNA Replication Machinery Family AT2G27120 68.2 0.0e+00 2955.6
Cec09g2157 . 106 2203 Core DNA Replication Machinery Family AT2G27120 65.1 0.0e+00 2751.1
Cec01g1812 . 681 1116 Core DNA Replication Machinery Family AT5G22110 71.1 3.1e-184 641.7
Cec02g2368 . 74 998 Core DNA Replication Machinery Family AT5G22010 63.2 7.7e-306 1046.6
Cec10g0359 . 1 331 Core DNA Replication Machinery Family AT1G63160 91.3 2.8e-173 604.7
Cec04g0586 . 1 354 Core DNA Replication Machinery Family AT5G27740 85.0 4.1e-178 620.9
Cec11g1645 . 63 381 Core DNA Replication Machinery Family AT1G21690 81.6 1.6e-144 509.2
Cec08g0611 . 1 363 Core DNA Replication Machinery Family AT1G77470 76.3 1.3e-155 546.2
Cec11g0165 . 26 607 Core DNA Replication Machinery Family AT2G06510 67.7 3.0e-245 844.7
Cec10g0110 . 32 703 Core DNA Replication Machinery Family AT2G06510 50.3 3.4e-196 681.8
Cec06g1758 . 1 623 Core DNA Replication Machinery Family AT5G08020 67.9 1.8e-247 852.0
Cec10g0110 . 10 812 Core DNA Replication Machinery Family AT5G45400 50.3 5.1e-227 784.6
Cec06g1758 . 1 618 Core DNA Replication Machinery Family AT5G61000 65.6 1.5e-239 825.9
Cec10g0110 . 5 798 Core DNA Replication Machinery Family AT4G19130 53.4 1.5e-225 779.6
Cec03g1851 . 1 568 Core DNA Replication Machinery Family AT5G26680 58.5 5.8e-168 587.4
Cec05g0315 . 1 1110 Core DNA Replication Machinery Family AT1G08840 52.5 3.3e-300 1028.1
Cec07g1686 . 1 282 Core DNA Replication Machinery Family AT2G25100 66.7 7.7e-108 387.1
Cec02g2268 . 2 762 Core DNA Replication Machinery Family AT1G08130 69.2 8.7e-298 1019.6
Cec02g2268 . 162 762 Core DNA Replication Machinery Family AT1G49250 69.1 3.3e-242 834.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009501 1 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 33