Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g2368 ATGTTCTTAAAAAATTTTTGTACGACATCCGGCCTTCACCCGCCAGAATCCTCGAGCCATTGCAATCTCCTTCTAGCTTCCAAGGCACGGAAGTTGCCGGCGATCTTCGACCAAGACGAACCGAAAGAGCCCAGTCGAACGGTGAACTTGACAGTGGAGTGGCGTTTCTTGCCTTTTGCACTCCGCCTTGCATTCTACAATGGTGAGTTAGGGTTTTCGGCGGATATTAGAAAATGGTTCATGAAAGCACACGATAAAGAGAACGGCAGTGGATCAAAGAAAGCAAAACCTGCTCCAAGCAACTTAGGGAAATCCGCTGCAGCTGAACTACAGTCCGGGAAAACAGGGCCGAGTGGTGGAGAAAGTACTGGCAGACGGATAACTAGCAAGTATTTTGCATCAGAAAAGCATAAGGACAAGGATACAAAAGAAACAGAGGAACCCCCAATCAAACAAAAGTCTCCACAGGATCCTAAGGAATCTCCAGCCAAAAGAAAGTTTCAAATGGATAATGAGGGTTCACCAAAAGCTTCACCTTTAAAAAAATCAAACAAAATTGATGACAATGACGATGATGCTGTTTTTTCTAGTTCTAGAAAGAACATGTCTGAAGTCACTCCCAACAAAAAGTTGAAGAGTGGTTCTGGAAAGGGAATTACACAGAAACCTTTAGAAATTGAAGCGAGTGATGATGAGGAAACTAAGGGCACCGATTCTTCTCTGAAGCCTAGTGGAAGAGGTAGGGGAGGAAGGGGTTCATCTGCTGCAACCGGTGGTGGTAGAGGCAGAGGTGGTGGGCGAGGTGGATTTATGAATTTTGGGGAAAGGAAAGATCCTCCACACAAAGGAGAAAAGGAAGTCCCTGAAGGTGCTTCAGACTGCTTAGCCGGTTTAACTTTTGTAATTAGTGGAACCCTTGACAGTTTGGAACGAGAAGAAGCAGAAGATTTGATTAAACGCCACGGTGGCCGAGTAACTGGATCTGTCAGCAAAAAAACAAATTATCTACTATGTGATGAAGATATTGGTGGCCGAAAATCTTCCAAAGCAAAAGAGCTGGGAACCGGTTTTCTCACTGAGGATGGCTTATTTGACATGATCCGTGCATCAGGCCAAAAAGCTCCTCCAAGGCAAGATCCTAAAAAATCTGTGGTTAAGTCCTCTGTGGAATCTCCGACAGAGAAAAATTTCCAGAAAGTACAAGCAAAGCCCCACAAGGATTTGACTGCTAGTGCTTCACCTGCTAAGCAAAAAAGCCAAACAGCTGAATTCTCTAACCTAACATGGACCGAAAAATATAGGCCAAAGGTTCCAAATGACATTATAGGGAATCAGTCGCTGGTCAAACAACTTCATGATTGGTTGGCACATTGGAACAAAAACTTCCTAGATGTTGGAAGCAAAAAGAAGGTTAAAAAGCTCAATGATTCTGGTGCCAAAAAAGCTGTCTTGTTATGTGGAGGTCCTGGCATAGGTAAAACTACATCCGCTAAGTTGGTTAGCCAGATGCTTGGTTTTGAGGCTATAGAGGTAAACGCCAGCGACAATCGAGGTAAATCAGATGCCAAAATTCAAAAGGGAATTGGTGGAAGCAATGCAAATTCTATAAAGGAGCTTATCAGCAATGAATCACTGCACTTCAGAATGGATCAGCCAAAACATCCCAAAACTGTGTTGATCATGGATGAGGTAGATGGAATGTCTGCTGGAGATAGGGGTGGAGTTGCTGATCTGATTGCAAGCATTAAAATGTCCAAAATTCCAATTATCTGCATCTGTAATGACCGTTACAGCCAGAAGCTGAAAAGCCTTGTGAACTACTGTCTTATTCTCAGCTTTAGGAAACCTACAAAACAACAGATGGCAAAACGATTGATTCAAGTCGCAAATGCAGAAGGCCTTCAAGTTAACGAGATTGCTCTTGAGGAACTTGCAGAAAGAGTAAATGGGGACATGCGTATGGCACTAAATCAGTTGCAGTACCTGAGTCTGTCTATGCCAGTTATTAAGTATGATGATATTCGCCAACGGCTTCTGGGCAGCATGAAAGATGAAGACATCTCACCATTCACTGCTGTTGATAAGCTGTTTGGTTTCAATTCTGGGAAGTTAAGGATGGATGAAAGGATTGACCTCAGCATGAGTGATCTTGATTTAGTCCCTCTTCTTATTCAGGAAAATTATATTAATTACAGGCCAAGCGCTGTTAGTAAGGATGACAATGGGATCAAACGGATGGATTTGATTGCCCGTACAGCTGAATCTATTGCAGATGGGGATATAATCAATGTACAGATTCGAAGGCATCGACAGTGGCAACTCTCTCAAAGTAGTTGTATTGCTTCTTGTGTAATCCCAGCTTCATTATTGCATGGGCAAAGAGAAACGCTTGAGCAGGGAGAGCGTAATTTTAATAGATTTGGTGCATGGCTGGGAAAAAATTCAACATTTGGAAAAAATATGAGGCTTTTGGAGGATTTGCACGTTCACATTCTTGCTTCTCGCGAATCCTGCTCAGGGAGGGAACACCTAAGAGTTGAGAACCTTACTCTATTTCTAAAGAGGTTGACTGAGCCACTACACACGCTGCCTAAGGATGAAGCTGTTAAAATGGTGGTCGAATTTATGAGTCTATATTCAATCAGTCAGGAGGATTTTGATACTGTTCTTGAGTTGTCAAAATTTCAGGGTCGTAAGAATCCATTGGATGGTGTAACCCCCGCAGTCAAAGCTGCTCTGACAAAGGCATACAAAGAAGTAAGCAAGACACACATGGTGCGGGCCGCAGATCTTATTACGCTTCCTGGAATGAAAAAAGCCCCTAAGAAGCGAATTGCAGCGATTCTAGAACCAACTGAGGATGCAGTTGAAGGTGCTGTTGGAGACACATTGGCAGAAAGTGACGATGAAAACTCTTTGGACAATGAGGACGCAGAAGACGCCACAAACGGTGAGAAGCTGCAATTGGAACTTCAAAGCTTGAATAAGAAAGGAATGCAAGTGCAATTGGATTTGAAGGGTGTGGAAAATTCAAGTGCGACGAAATCTGGTGGCAGAGGACGAGGAGGTAGAAGTTCTCAGGCTTCAGAGAAGAAAGGTGGTCGAGGTTCAGAAATGAGACCAAGTCTTCGCCATGGAGCGGTCGACATTTGGGATGATGATTCACCCAACGGACGAGACTGGTTTTTGTAG 3192 43.52 MFLKNFCTTSGLHPPESSSHCNLLLASKARKLPAIFDQDEPKEPSRTVNLTVEWRFLPFALRLAFYNGELGFSADIRKWFMKAHDKENGSGSKKAKPAPSNLGKSAAAELQSGKTGPSGGESTGRRITSKYFASEKHKDKDTKETEEPPIKQKSPQDPKESPAKRKFQMDNEGSPKASPLKKSNKIDDNDDDAVFSSSRKNMSEVTPNKKLKSGSGKGITQKPLEIEASDDEETKGTDSSLKPSGRGRGGRGSSAATGGGRGRGGGRGGFMNFGERKDPPHKGEKEVPEGASDCLAGLTFVISGTLDSLEREEAEDLIKRHGGRVTGSVSKKTNYLLCDEDIGGRKSSKAKELGTGFLTEDGLFDMIRASGQKAPPRQDPKKSVVKSSVESPTEKNFQKVQAKPHKDLTASASPAKQKSQTAEFSNLTWTEKYRPKVPNDIIGNQSLVKQLHDWLAHWNKNFLDVGSKKKVKKLNDSGAKKAVLLCGGPGIGKTTSAKLVSQMLGFEAIEVNASDNRGKSDAKIQKGIGGSNANSIKELISNESLHFRMDQPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKMSKIPIICICNDRYSQKLKSLVNYCLILSFRKPTKQQMAKRLIQVANAEGLQVNEIALEELAERVNGDMRMALNQLQYLSLSMPVIKYDDIRQRLLGSMKDEDISPFTAVDKLFGFNSGKLRMDERIDLSMSDLDLVPLLIQENYINYRPSAVSKDDNGIKRMDLIARTAESIADGDIINVQIRRHRQWQLSQSSCIASCVIPASLLHGQRETLEQGERNFNRFGAWLGKNSTFGKNMRLLEDLHVHILASRESCSGREHLRVENLTLFLKRLTEPLHTLPKDEAVKMVVEFMSLYSISQEDFDTVLELSKFQGRKNPLDGVTPAVKAALTKAYKEVSKTHMVRAADLITLPGMKKAPKKRIAAILEPTEDAVEGAVGDTLAESDDENSLDNEDAEDATNGEKLQLELQSLNKKGMQVQLDLKGVENSSATKSGGRGRGGRSSQASEKKGGRGSEMRPSLRHGAVDIWDDDSPNGRDWFL 1063
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 40939185 40953397 + CePI673135_02g023680.1 Cec02g2368 197421
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g2368 1063 MobiDBLite consensus disorder prediction 371 423 - -
Cec02g2368 1063 MobiDBLite consensus disorder prediction 1025 1039 - -
Cec02g2368 1063 Gene3D BRCT domain 267 369 IPR036420 -
Cec02g2368 1063 SMART AAA_5 479 617 IPR003593 GO:0016887(InterPro)
Cec02g2368 1063 MobiDBLite consensus disorder prediction 274 289 - -
Cec02g2368 1063 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 427 676 IPR027417 -
Cec02g2368 1063 MobiDBLite consensus disorder prediction 1004 1023 - -
Cec02g2368 1063 SUPERFAMILY BRCT domain 290 369 IPR036420 -
Cec02g2368 1063 CDD HLD_clamp_RFC 616 674 IPR047854 -
Cec02g2368 1063 SUPERFAMILY post-AAA+ oligomerization domain-like 687 832 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Cec02g2368 1063 CDD AAA 468 616 - -
Cec02g2368 1063 MobiDBLite consensus disorder prediction 198 215 - -
Cec02g2368 1063 Pfam BRCA1 C Terminus (BRCT) domain 292 367 IPR001357 -
Cec02g2368 1063 FunFam Replication factor C subunit 1 427 615 - -
Cec02g2368 1063 FunFam Replication factor C subunit 1 688 797 - -
Cec02g2368 1063 PIRSF RFC1 72 1019 IPR012178 GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)
Cec02g2368 1063 Pfam ATPase family associated with various cellular activities (AAA) 483 595 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Cec02g2368 1063 Gene3D - 688 798 - -
Cec02g2368 1063 SMART BRCT_7 292 370 IPR001357 -
Cec02g2368 1063 MobiDBLite consensus disorder prediction 105 129 - -
Cec02g2368 1063 Gene3D - 616 686 - -
Cec02g2368 1063 CDD BRCT_RFC1 290 368 - -
Cec02g2368 1063 Gene3D - 427 615 IPR027417 -
Cec02g2368 1063 MobiDBLite consensus disorder prediction 181 197 - -
Cec02g2368 1063 ProSiteProfiles BRCT domain profile. 290 368 IPR001357 -
Cec02g2368 1063 FunFam Replication factor C subunit 1 616 687 - -
Cec02g2368 1063 FunFam Replication factor C subunit 1 266 369 - -
Cec02g2368 1063 MobiDBLite consensus disorder prediction 224 239 - -
Cec02g2368 1063 MobiDBLite consensus disorder prediction 130 171 - -
Cec02g2368 1063 MobiDBLite consensus disorder prediction 86 290 - -
Cec02g2368 1063 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 139 999 - GO:0003677(PANTHER)|GO:0005634(PANTHER)
Cec02g2368 1063 MobiDBLite consensus disorder prediction 1045 1063 - -
Cec02g2368 1063 Pfam Replication factor RFC1 C terminal domain 756 918 IPR013725 GO:0003689(InterPro)|GO:0005524(InterPro)|GO:0005663(InterPro)|GO:0006260(InterPro)
Cec02g2368 1063 MobiDBLite consensus disorder prediction 1004 1063 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2368 Cec-Chr2:40939185 Cec05g0399 Cec-Chr5:3268872 5.50E-21 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g2368 K10754 - csv:101204361 1665.2