Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g2442 ATGACTGATCCTTACCCCATCAACAACAATGGCTCCTTTGGCAATTTATACCCTCTTCACCATTACTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCCAATTCTTACTCTCCTTATTATGATCATCCCTTCTCTCTTTCTTACTCCAATGATAATAATAACAATAATAATACCCTAATGACCTCTCCTCATTATCCTTCTTCCTCTCCTCAAGTCCTTCTTCCCCTTCTAAGCTTAAGCCCTGCAAGAGTAGCACAAGATCATGATAATGAAAATCACTCATTTTCCAAAGACTTGATCAAGAACTTTTGCAACCCAGCTGAAGATGATGTTGACAATGATAATGATGATGATGATGATCAAAGTGTTACTGTTGCTTTGCATTTAGGGCTTCCAACTCCTTCTTCTTCTTCTTCTAATTCTGATTTGATTTTGAGACTTTCTTCAACTGAGATCTCAGATCAAGATGATCATCATCAATTAGAAGATCAAGTTCCTAATTCTAATTATTCTTCTTCTAATTCCAATATTATTACTACTGCTGCTGCTACTACTACTACTGGACTTAATAAGGGTCAATATTGGATTCCAACTCCTGCTCAGATTCTTATTGGTCCAACTCAGTTTTCTTGCCCTCTTTGCTTCAAGACTTTCAATAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATACAGAAAAGGGCCACAATCACTAAGAGGAACACAACCAACAGCAATGCTTAGGCTGCCATGTTATTGCTGTGCAGTTGGGTGCAGAAACAACATAGACCATCCAAGGTCAAAGCCATTAAAAGACTTCAGAACTCTTCAAACACATTACAAAAGAAAACATGGAATGAAGCCATTTACATGTAGAAAATGTGGGAAAGCTTTTGCTGTGAGAGGAGATTGGAGAACCCATGAGAAAAATTGTGGGAAGCTTTGGCATTGCACTTGTGGCTCTGATTTTAAGCATAAGAGATCTCTTAAAGATCATATCAAAGCCTTTGGACATGGCCATGCAGCTTATGGAATTGATCACTCTTTTGAAGAAGATGATGAGCCAGCTTCTGAGATTGAAACATGA 1107 38.03 MTDPYPINNNGSFGNLYPLHHYFSSSSSSSSSSSSSNSYSPYYDHPFSLSYSNDNNNNNNTLMTSPHYPSSSPQVLLPLLSLSPARVAQDHDNENHSFSKDLIKNFCNPAEDDVDNDNDDDDDQSVTVALHLGLPTPSSSSSNSDLILRLSSTEISDQDDHHQLEDQVPNSNYSSSNSNIITTAAATTTTGLNKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPQSLRGTQPTAMLRLPCYCCAVGCRNNIDHPRSKPLKDFRTLQTHYKRKHGMKPFTCRKCGKAFAVRGDWRTHEKNCGKLWHCTCGSDFKHKRSLKDHIKAFGHGHAAYGIDHSFEEDDEPASEIET 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 41628104 41630947 + CePI673135_02g024420.1 Cec02g2442 197495
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g2442 368 SMART c2h2final6 259 291 IPR013087 -
Cec02g2442 368 SMART c2h2final6 212 234 IPR013087 -
Cec02g2442 368 SMART c2h2final6 296 316 IPR013087 -
Cec02g2442 368 SMART c2h2final6 322 345 IPR013087 -
Cec02g2442 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 296 323 IPR013087 -
Cec02g2442 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 212 239 IPR013087 -
Cec02g2442 368 PANTHER ZINC FINGER PROTEIN WIP2 37 367 IPR043584 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0010468(PANTHER)|GO:0010468(InterPro)|GO:0048856(PANTHER)
Cec02g2442 368 FunFam Zinc finger protein WIP2 265 347 - -
Cec02g2442 368 ProSitePatterns Zinc finger C2H2 type domain signature. 214 234 IPR013087 -
Cec02g2442 368 Pfam Zinc finger, C2H2 type 212 231 IPR013087 -
Cec02g2442 368 SUPERFAMILY beta-beta-alpha zinc fingers 277 316 IPR036236 -
Cec02g2442 368 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 295 319 - -
Cec02g2442 368 Gene3D Classic Zinc Finger 256 344 - -
Cec02g2442 368 Gene3D Classic Zinc Finger 211 234 - -
Cec02g2442 368 MobiDBLite consensus disorder prediction 50 70 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1316 Cec-Chr1:24607268 Cec02g2442 Cec-Chr2:41628104 2.80E-83 transposed
Cec03g0994 Cec-Chr3:18229877 Cec02g2442 Cec-Chr2:41628104 3.70E-86 transposed
Cec04g0167 Cec-Chr4:6582323 Cec02g2442 Cec-Chr2:41628104 1.10E-97 transposed
Cec10g1741 Cec-Chr10:32086938 Cec02g2442 Cec-Chr2:41628104 7.40E-95 transposed
Cec02g2442 Cec-Chr2:41628104 Cec09g0419 Cec-Chr9:3626026 4.30E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29153 None None None None Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g2442 - - - 0.0