Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g2445 ATGGGATCCATGAATTCAAACAATTGGCTTTCCTTTCCACTTTCACCTACTAATCCTTCTTTACCACCACATCTTCAAACCGCAACTCATTCCCATCATTTCTCTTTGGGAAATTTGGAGAATGATCATAATATGGACATCCCATTTCAAACCCACCATGAGTGGAATCTGATAAGTAATCAAAGTGGTGGTGAAGTTCCAAAAATAGCAGATTTTTTAGGAGTAAGCAAGGCAGAAAATGAGACAGATCTCATTGGGTTTAATGAAATTCATCATCAAAGCAATGATACAGATTATTTGTTTCCAATCACAAGATTAGTTTCTGTTCATCAACAACAACAACAACAACAACAACAACAACAACCCACTGCTCCCCCTCCTAATATAAATCTTGCCTCTTCTACTAACTTTGATCTTCAAGATAATTCCAATTGTTTGCAATCTTTAACCCTTTCAATGGGCAGTGGCAAACCCTCTACTTGTGAACAAACAACCTCCACCCCTGACAATAGTACCTCCAATAATAATAATAATAACAATAATAATACCACTCTTGATGTCACCCCTCGAAGAACTTTGGACACTTTTGGCCAAAGAACTTCCATTTATCGCGGTGTCACCAGGCATAGATGGACAGGAAGGTATGAAGCACATTTGTGGGATAATAGTTGCAGAAGGGAAGGGCAGTCCAGGAAGGGTCGGCAAGGTGGGTATGATAAAGAAGAGAAAGCAGCTAGGGCTTATGATCTTGCTGCATTGAAATACTGGGGAACATCCACCACCACAAATTTTCCTATTAGTAACTACGAGAAGGAAGTGGAGGAAATGAAGCACATGACAAGACAAGAATTTGTGGCTGCAATTAGAAGGAAAAGTAGTGGATTTTCAAGGGGAGCATCAATGTATCGTGGAGTTACAAGGCACCACCAGCATGGAAGATGGCAGGCTAGGATTGGAAGAGTAGCAGGAAACAAAGATCTTTATTTGGGAACTTTCAGTACAGAAGAGGAAGCAGCAGAAGCATATGACATAGCGGCGATAAAATTTAGAGGACTAAACGCAGTGACAAATTTCGACATGAGTCGTTATGACGTGAAAAGCATATTAGAGAGCAACACGCTCCCAATCGGTGGCGGTGCAGCGAAGCGACTAAAAGAGGCTCAAGCCATGGAATCGTCTCGAAAACGAGATGAGATGATTGCCCTAGGTTCCTCTTCCTCCTCATCCTCTTGCTTCCAATATGGAACCTCTTCCTCCTCAACTAATAATTCCTCCCATTACCCTAATTTACTCCAACAACCAAATCTCAATATGGACCATCACCTTCAAACCCAACCTTTGCTCTCTCTTCAAAACCAGCATGATATTTCTCATTACACCCACCATCATTCCTCCTCCTTCCACCACCCTTCGTCTTCTTACATCCACCACTCATCTGATCATTCCGCTTATCCTAACAACAACAGCCATCCATTCTACGGTGGAGGATATCTTCATAATCATCCCGCTTTGCTTCACGGGATGATCAATATGGGCGGTGGAGGTGGCGGAGGCGGCGGAGGAGCTTCTAGTTTGGACACTAATAACAATACTAATACCTTGAATCATTTTGAGAATAATACTAGTGGAGCAGGGTATCTTGGGAATGCATTTGGGATGGGTTCTACCTCGAACAGCAGCGGCGCCGCAGCGGAGGAATATGCGCTCGTTAAGGTTGACTATGACATGCCTAATTCTGGCGGGTACGGTGGTTGGACGGGGGATTCGGTTCAAGGTTCTAACGCTGGGGTTTTCTCTATGTGGAACGATTGA 1812 43.21 MGSMNSNNWLSFPLSPTNPSLPPHLQTATHSHHFSLGNLENDHNMDIPFQTHHEWNLISNQSGGEVPKIADFLGVSKAENETDLIGFNEIHHQSNDTDYLFPITRLVSVHQQQQQQQQQQQPTAPPPNINLASSTNFDLQDNSNCLQSLTLSMGSGKPSTCEQTTSTPDNSTSNNNNNNNNNTTLDVTPRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQGGYDKEEKAARAYDLAALKYWGTSTTTNFPISNYEKEVEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESNTLPIGGGAAKRLKEAQAMESSRKRDEMIALGSSSSSSSCFQYGTSSSSTNNSSHYPNLLQQPNLNMDHHLQTQPLLSLQNQHDISHYTHHHSSSFHHPSSSYIHHSSDHSAYPNNNSHPFYGGGYLHNHPALLHGMINMGGGGGGGGGGASSLDTNNNTNTLNHFENNTSGAGYLGNAFGMGSTSNSSGAAAEEYALVKVDYDMPNSGGYGGWTGDSVQGSNAGVFSMWND 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 41663069 41666412 + CePI673135_02g024450.1 Cec02g2445 197498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g2445 603 Pfam AP2 domain 302 351 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec02g2445 603 MobiDBLite consensus disorder prediction 110 130 - -
Cec02g2445 603 SUPERFAMILY DNA-binding domain 300 361 IPR016177 GO:0003677(InterPro)
Cec02g2445 603 PRINTS Ethylene responsive element binding protein signature 203 214 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec02g2445 603 PRINTS Ethylene responsive element binding protein signature 341 361 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec02g2445 603 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 142 459 - -
Cec02g2445 603 Gene3D AP2/ERF domain 202 267 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec02g2445 603 Gene3D AP2/ERF domain 301 361 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec02g2445 603 ProSiteProfiles AP2/ERF domain profile. 202 265 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec02g2445 603 FunFam AP2-like ethylene-responsive transcription factor 300 361 - -
Cec02g2445 603 ProSiteProfiles AP2/ERF domain profile. 301 359 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec02g2445 603 MobiDBLite consensus disorder prediction 148 188 - -
Cec02g2445 603 CDD AP2 201 267 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec02g2445 603 SUPERFAMILY DNA-binding domain 201 267 IPR016177 GO:0003677(InterPro)
Cec02g2445 603 SMART rav1_2 202 271 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec02g2445 603 SMART rav1_2 301 365 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cec02g2445 603 MobiDBLite consensus disorder prediction 460 482 - -
Cec02g2445 603 MobiDBLite consensus disorder prediction 405 425 - -
Cec02g2445 603 FunFam AP2-like ethylene-responsive transcription factor ANT 201 267 - -
Cec02g2445 603 MobiDBLite consensus disorder prediction 466 482 - -
Cec02g2445 603 CDD AP2 300 361 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2445 Cec-Chr2:41663069 Cec11g0922 Cec-Chr11:14235145 2.00E-105 dispersed
Cec02g2445 Cec-Chr2:41663069 Cec04g1474 Cec-Chr4:34282342 3.70E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29154 PF00847 AP2 2.90E-09 CL0081 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g2445 K09285 - csv:101207097 990.334