Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g2502 ATGATGCAAGTGGTGGTCCGTTGGCTGGGGTTGTTCAGCGGCGTAAACCTCGTTTCCTGCTGTTTTCTGCTCGATCACTCTCTAACCCTTCAATTTTCCCATCTGGATGATTGTATGAGTACAATAGAATTCAGAGAGAAGGGGATGTATCAGCAGCCGAAGTCAAGGGAAGAACATGCTTCTTCTGCAGCCAGCTTCTGCAAAGAAGTGACTGAGTTGCGCCTTGCATCAATAGATTCTCAAGCAGCAACTTCTCGTCCAGAGTTCAAAGGTGTCACTTTCAGGAAAGCTTCAACTGGTGGTTTTGCTAGGAGTCGTAATGATGTACACGAGCTACTCGATTGTACTGTTTGCATGAATTTAATGCATCCTCCAATTTACCAGTGTGCAAATGGGCACACTCTTTGTTCAAGCTGCAAGGCGAGGGTTCAGAACTGTTGCCCGACCTGCCGGCATGAGCTGGGGAACATAAGGTGCCTAGCACTGGAAAAGGTGGCTGAGTCGCTCGAGCTCCCTTGTGTGTACCAAAACCTAGGTTGCATTGACATGTTCCCATATTACAGCAAGCTTAAACATGAGAAGAATTGTAAATACCGGCCGTACAACTGCCCTTACGCTGGAGGTGAATGTCGTGTAACTGGTGATATTCCATACCTTGTCATGCATCTCAAGGACGATCACGAGGTTGATATGCATGATGGATGTTCCTTCAGCCATAGATATGTCAAATCCAATCCCCAAGAAGTTGAAAATGCTACATGGATGCTTACTGTTTTCAACTGCTTCGGACGACAATTCTGTTTGCACTTCGAAGCATTTCGGTTAGGAACAGCACCTGTTTACATGGCATTCCTCCGGTTCATGGGAGACGACGACGATGCAAAACAATTTTCTTACAGTCTGGAAGTTGGTGGAAATGGAAGAAAACTCATCTGGCAAGGTATTCCTAGAAGTATCCGCGATAGCCATCGGAAGGTTCGAGACAGTCACGATGGACTAATCATTCAGAGGAAGTTGGCACTATTCTGCTCTGGAAATGAGGGGATGGAACTGAAGTTAAAGGTTACAGGGCGAATATGGAGAGTAAGGTGA 1092 46.15 MMQVVVRWLGLFSGVNLVSCCFLLDHSLTLQFSHLDDCMSTIEFREKGMYQQPKSREEHASSAASFCKEVTELRLASIDSQAATSRPEFKGVTFRKASTGGFARSRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIRCLALEKVAESLELPCVYQNLGCIDMFPYYSKLKHEKNCKYRPYNCPYAGGECRVTGDIPYLVMHLKDDHEVDMHDGCSFSHRYVKSNPQEVENATWMLTVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDDDAKQFSYSLEVGGNGRKLIWQGIPRSIRDSHRKVRDSHDGLIIQRKLALFCSGNEGMELKLKVTGRIWRVR 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 42087417 42092594 + CePI673135_02g025020.1 Cec02g2502 197555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g2502 363 Pfam Sina, zinc finger 164 239 - -
Cec02g2502 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 50 167 IPR013083 -
Cec02g2502 363 SUPERFAMILY RING/U-box 97 155 - -
Cec02g2502 363 ProSiteProfiles Zinc finger RING-type profile. 115 151 IPR001841 -
Cec02g2502 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 168 223 IPR013083 -
Cec02g2502 363 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 225 356 IPR008974 GO:0005515(InterPro)
Cec02g2502 363 ProSiteProfiles Zinc finger SIAH-type profile. 168 228 IPR013010 GO:0008270(InterPro)
Cec02g2502 363 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 65 358 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Cec02g2502 363 FunFam E3 ubiquitin-protein ligase SINAT5-like 224 356 - -
Cec02g2502 363 FunFam E3 ubiquitin-protein ligase SINAT3 165 223 - -
Cec02g2502 363 Pfam Sina, TRAF-like domain 259 356 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Cec02g2502 363 SUPERFAMILY TRAF domain-like 168 359 - -
Cec02g2502 363 CDD RING-HC_SIAHs 113 151 - -
Cec02g2502 363 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 115 150 IPR049548 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2502 Cec-Chr2:42087417 Cec04g0184 Cec-Chr4:7210046 2.20E-134 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g2502 K04506 - csv:101213438 671.774