Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec02g2502 | ATGATGCAAGTGGTGGTCCGTTGGCTGGGGTTGTTCAGCGGCGTAAACCTCGTTTCCTGCTGTTTTCTGCTCGATCACTCTCTAACCCTTCAATTTTCCCATCTGGATGATTGTATGAGTACAATAGAATTCAGAGAGAAGGGGATGTATCAGCAGCCGAAGTCAAGGGAAGAACATGCTTCTTCTGCAGCCAGCTTCTGCAAAGAAGTGACTGAGTTGCGCCTTGCATCAATAGATTCTCAAGCAGCAACTTCTCGTCCAGAGTTCAAAGGTGTCACTTTCAGGAAAGCTTCAACTGGTGGTTTTGCTAGGAGTCGTAATGATGTACACGAGCTACTCGATTGTACTGTTTGCATGAATTTAATGCATCCTCCAATTTACCAGTGTGCAAATGGGCACACTCTTTGTTCAAGCTGCAAGGCGAGGGTTCAGAACTGTTGCCCGACCTGCCGGCATGAGCTGGGGAACATAAGGTGCCTAGCACTGGAAAAGGTGGCTGAGTCGCTCGAGCTCCCTTGTGTGTACCAAAACCTAGGTTGCATTGACATGTTCCCATATTACAGCAAGCTTAAACATGAGAAGAATTGTAAATACCGGCCGTACAACTGCCCTTACGCTGGAGGTGAATGTCGTGTAACTGGTGATATTCCATACCTTGTCATGCATCTCAAGGACGATCACGAGGTTGATATGCATGATGGATGTTCCTTCAGCCATAGATATGTCAAATCCAATCCCCAAGAAGTTGAAAATGCTACATGGATGCTTACTGTTTTCAACTGCTTCGGACGACAATTCTGTTTGCACTTCGAAGCATTTCGGTTAGGAACAGCACCTGTTTACATGGCATTCCTCCGGTTCATGGGAGACGACGACGATGCAAAACAATTTTCTTACAGTCTGGAAGTTGGTGGAAATGGAAGAAAACTCATCTGGCAAGGTATTCCTAGAAGTATCCGCGATAGCCATCGGAAGGTTCGAGACAGTCACGATGGACTAATCATTCAGAGGAAGTTGGCACTATTCTGCTCTGGAAATGAGGGGATGGAACTGAAGTTAAAGGTTACAGGGCGAATATGGAGAGTAAGGTGA | 1092 | 46.15 | MMQVVVRWLGLFSGVNLVSCCFLLDHSLTLQFSHLDDCMSTIEFREKGMYQQPKSREEHASSAASFCKEVTELRLASIDSQAATSRPEFKGVTFRKASTGGFARSRNDVHELLDCTVCMNLMHPPIYQCANGHTLCSSCKARVQNCCPTCRHELGNIRCLALEKVAESLELPCVYQNLGCIDMFPYYSKLKHEKNCKYRPYNCPYAGGECRVTGDIPYLVMHLKDDHEVDMHDGCSFSHRYVKSNPQEVENATWMLTVFNCFGRQFCLHFEAFRLGTAPVYMAFLRFMGDDDDAKQFSYSLEVGGNGRKLIWQGIPRSIRDSHRKVRDSHDGLIIQRKLALFCSGNEGMELKLKVTGRIWRVR | 363 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
2 | 42087417 | 42092594 | + | CePI673135_02g025020.1 | Cec02g2502 | 197555 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec02g2502 | 363 | Pfam | Sina, zinc finger | 164 | 239 | - | - | |
Cec02g2502 | 363 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 50 | 167 | IPR013083 | - | |
Cec02g2502 | 363 | SUPERFAMILY | RING/U-box | 97 | 155 | - | - | |
Cec02g2502 | 363 | ProSiteProfiles | Zinc finger RING-type profile. | 115 | 151 | IPR001841 | - | |
Cec02g2502 | 363 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 168 | 223 | IPR013083 | - | |
Cec02g2502 | 363 | Gene3D | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 225 | 356 | IPR008974 | GO:0005515(InterPro) | |
Cec02g2502 | 363 | ProSiteProfiles | Zinc finger SIAH-type profile. | 168 | 228 | IPR013010 | GO:0008270(InterPro) | |
Cec02g2502 | 363 | PANTHER | E3 UBIQUITIN PROTEIN LIGASE SIAH | 65 | 358 | IPR052088 | GO:0005737(PANTHER)|GO:0061630(PANTHER) | |
Cec02g2502 | 363 | FunFam | E3 ubiquitin-protein ligase SINAT5-like | 224 | 356 | - | - | |
Cec02g2502 | 363 | FunFam | E3 ubiquitin-protein ligase SINAT3 | 165 | 223 | - | - | |
Cec02g2502 | 363 | Pfam | Sina, TRAF-like domain | 259 | 356 | IPR018121 | GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro) | |
Cec02g2502 | 363 | SUPERFAMILY | TRAF domain-like | 168 | 359 | - | - | |
Cec02g2502 | 363 | CDD | RING-HC_SIAHs | 113 | 151 | - | - | |
Cec02g2502 | 363 | Pfam | E3 ubiquitin-protein ligase sina/sinah, RING finger | 115 | 150 | IPR049548 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec02g2502 | Cec-Chr2:42087417 | Cec04g0184 | Cec-Chr4:7210046 | 2.20E-134 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec02g2502 | K04506 | - | csv:101213438 | 671.774 |