Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g2536 ATGTATGACTCAGTATGTGTAATTGGAGGCCTAACAAAGTTCTGCTGGCTTCACTTGAAGAGGGATCTTCAAACTAATGCAGAGGTCAGGGATTTGTCGAACTTCCCAGAGGAATGCACAGAACACAGTCTTGTATGCCCCTTTCCCGTTCCAGCTCATAAAAGGAGTTTTCTCTTTGGACTTCTTGGAATAGAACATTACAATAGGGAGACTTCTTTATGCTATGTTGTTGATTTGAGCATGATGATATATGTGCAAAGTAAGAATGAGGATCCTCTCGCATTTGTCAACCTACTACCTTTCAGGATGCAAAGAGGGTTAGAATATTTTACATCCATGAGAAGATCAGGTGTAAACCAACCAAAAGTTAAGCGTCTTGTTGGAAAATACGAAATTGGTCGAACAATTGGTGAGGGTACATTTGCGAAGGTGAAAATTGCCAAAAATTCAGAGACTGGGGATCATGTAGCAATAAAGATTCTCGACAAAGAGAAAGTTCTGAAGCACAAGATGGCTGAACAGATCAAGCGGGAAATTGCCACAATGAAACTAATAAAGCATCCACATGTCGTCCAATTATTTGAGGTGATGGGGAGCAAAACCAAGATATTTATTGTTTTGGAATTTGTTACTGGAGGAGAACTTTTTGATAAAATTGTAAATCATGGACGGATGAGTGAAAATGAGGCACGGAGATATTTCCAGCAACTTATAAATGCTGTTGATTATTGTCATAGCAGGGGTGTTTACCACAGGGATCTTAAGCCAGAAAATCTATTGTTAGATGCCTACGGGAATCTTAAAGTGTCTGATTTTGGATTAAGTGCACTGTCACAACAAGTTAAGGATGATGGCCTGCTTCACACTACTTGTGGAACTCCAAACTATGTTGCTCCCGAGGTCCTTAAGGATAGAGGCTACGATGGTGCAACTGCAGACTTATGGTCTTGTGGAGTTATACTCTTTGTACTGCTTGCAGGTTACTTGCCTTTTGATGATTCTAATCTCATCAACCTTTATAAAAAGATCTCGGCTGCTGAATTTACTTGTCCTCCGTGGCTTTCTTTAGATGCCATGAAATTGATAGCTCGAATTTTGGATCCCAACCCAATGACTCGCATCACTATACCTGAAATTTTGGAAGATGAATGGTTTAAGAAAGATTATAAGCCCCCTGTTTTTGAGGAGCCTAAGATTGCAAACTTGGATGATGTAGAAGCTGTCTTCAAAGATTCAGAAGAGCACCATGTGACAGAGAAGAAGGAAGAACACCCAGCAGCTATGAATGCCTTCGAGTTAATTTCAATGTCGAAAGGGCTCAACCTGGCAAATTTGTTTGGTACAGAACAGGAGTTCAAGAGAGAAACAAGGTTCACCTCTAAATGCTCAGCTAATGAAATTGTAAATAAGATCGAAGAAGCTGCGAAACCTCTTGGTTTTGATGTACAAAAGAAAAATTACAAGATGAGGCTTGAAAATGTGAAAGCCGGTCGGAAGGGAAACCTTAATGTTGCCACAGAGATTCTGCAAGTTGCACCTTCTGTCCATGTGGTGGAGATGAGAAAAGCAAAGGGGGACACTTTAGAGTTTCACAAGTTCTACAAAAACCTCTCCACCTCCCTGGAGGATGTTGTTTGGAAGACGGAGGAAGACATGCAGGAAACAAATTTGGAAACTTTTGTTCTGCAGTCAACAAAGAAAGAAGATGAAATATAG 1716 40.38 MYDSVCVIGGLTKFCWLHLKRDLQTNAEVRDLSNFPEECTEHSLVCPFPVPAHKRSFLFGLLGIEHYNRETSLCYVVDLSMMIYVQSKNEDPLAFVNLLPFRMQRGLEYFTSMRRSGVNQPKVKRLVGKYEIGRTIGEGTFAKVKIAKNSETGDHVAIKILDKEKVLKHKMAEQIKREIATMKLIKHPHVVQLFEVMGSKTKIFIVLEFVTGGELFDKIVNHGRMSENEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDAYGNLKVSDFGLSALSQQVKDDGLLHTTCGTPNYVAPEVLKDRGYDGATADLWSCGVILFVLLAGYLPFDDSNLINLYKKISAAEFTCPPWLSLDAMKLIARILDPNPMTRITIPEILEDEWFKKDYKPPVFEEPKIANLDDVEAVFKDSEEHHVTEKKEEHPAAMNAFELISMSKGLNLANLFGTEQEFKRETRFTSKCSANEIVNKIEEAAKPLGFDVQKKNYKMRLENVKAGRKGNLNVATEILQVAPSVHVVEMRKAKGDTLEFHKFYKNLSTSLEDVVWKTEEDMQETNLETFVLQSTKKEDEI 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 42398226 42405199 + CePI673135_02g025360.1 Cec02g2536 197589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g2536 571 Gene3D Kinase associated domain 1, KA1 422 547 - -
Cec02g2536 571 CDD STKc_SnRK3 129 384 - -
Cec02g2536 571 ProSiteProfiles NAF domain profile. 423 447 IPR018451 GO:0007165(InterPro)
Cec02g2536 571 FunFam Non-specific serine/threonine protein kinase 121 209 - -
Cec02g2536 571 Gene3D Transferase(Phosphotransferase) domain 1 210 392 - -
Cec02g2536 571 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec02g2536 571 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 120 535 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cec02g2536 571 Gene3D Phosphorylase Kinase; domain 1 119 209 - -
Cec02g2536 571 ProSitePatterns Protein kinases ATP-binding region signature. 136 159 IPR017441 GO:0005524(InterPro)
Cec02g2536 571 Pfam Protein kinase domain 130 385 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec02g2536 571 CDD CIPK_C 429 543 - -
Cec02g2536 571 SUPERFAMILY Protein kinase-like (PK-like) 126 412 IPR011009 -
Cec02g2536 571 ProSiteProfiles Protein kinase domain profile. 130 385 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec02g2536 571 FunFam Non-specific serine/threonine protein kinase 422 547 - -
Cec02g2536 571 FunFam Non-specific serine/threonine protein kinase 123 426 - -
Cec02g2536 571 SMART serkin_6 130 385 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec02g2536 571 Pfam NAF domain 425 484 IPR004041 GO:0007165(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2536 Cec-Chr2:42398226 Cec03g0761 Cec-Chr3:8350328 2.80E-181 dispersed
Cec10g1822 Cec-Chr10:33020566 Cec02g2536 Cec-Chr2:42398226 5.80E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71796 PF00069 Pkinase 2.00E-72 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g2536 - - - 0.0