Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g2538 ATGATGATTCTACAGACCAAAAATATAGAAGAGAAGAGAAGAGAAGAGAAGAGTTTGTGGGGGAACAAATTTGCTGCCATAGGGCTCGACTCTCCTCTTTCATCTCTATTCTTCGACCTCTTCTGCGTACGGAGCTGCTCAATTCCGTCTCTGGTCTCCAGCTCTTTGGCTACTCCCTTCAATTCCCAATTCAGGGTCTTCAGGGAAGGGAGATTACGCGTCCAAGGGAAGACTATGGCTGTAACAGCCCCAGGGCAGCTCAACGTTAACGAGTCTCCTTCGTGGGGATCTAGAAGTGTCGACTGCTTTGAAAAACTGGAGCAGATTGGTGAAGGCACTTATGGTCAAGTTTACATGGCCAGAGAATTAAAAACAGGTGAAATTGTTGCACTGAAGAAAATACGAATGGACAATGAGAGGGAGGGGTTCCCTATTACTGCCATACGAGAAATCAAAATTTTAAAGAAGCTTCATCATGAAAATGTAATCAAGTTGAAAGAGATCGTGACATCTCCAGGTCCTGAGAAGGATGAACAAGGGAAGCCAGATGGTAATAAGTACAAAGGTGGAATCTACATGGTTTTTGAGTACATGGACCATGATTTGACTGGTCTTGCTGATCGTCCAGGGATGAGATTTTCAGTTCCTCAAATCAAGTGTTACATGAGACAGCTTCTCACCGGGCTTCACTATTGTCATGTAAATCAAGTACTCCATAGAGATATAAAAGGCTCAAATCTGCTTATTGACAATGAAGGAAATCTGAAGCTTGCAGATTTTGGGCTTGCCCGATCATTTTCTAATGATCATAATGCAAATTTAACAAATCGTGTCATTACCTTATGGTACAGACCTCCTGAATTGCTGCTTGGGTCGACCAAATATGGTCCAGCTGTGGATATGTGGTCTGTTGGTTGTATCTTTGCAGAACTTCTACATGGGAAGCCAATATTCCCTGGGAAGGATGAGCCGGAGCAATTAAATAAGATCTTTGAGCTGTGTGGTGCTCCGGATGAAGTCAATTGGCCTGGAGTTTCTAAAATCCCTTGGTACAATAATTTCAAGCCCACAAGGCCGATGAAGAGACGTCTTAGAGAAGTTTTCCGGCATTTTGATCGTCATGCTCTAGAACTGTTGGAGAAGATGCTTACGCTCGATCCTTCTCAGAGGATATCTGCCAAGGATGCCCTAGATGCGGAGTATTTTTGGACGGATCCATTACCATGTGATCCTAAAAGTTTGCCTAAGTATGAATCATCACACGAGTTCCAGACAAAGAAGAAGCGCCAACAGCAACGACAACATGAAGAAACTGCAAAGCGACAGAAGTTGCAACATCCACAGCATGCACGCCTTCCACCTATTCAGCAATCGGGGCAAGCACATGCACAGATGCGACCAGTGCCTAACCAACCAATTCATGGGTCTCAACAACCAGTTGCTGCAGGGCCTAGCCATCATTTTGGAAAGCCTCGTGGACCCCCAGGTCCTGGTAGGTATCCCGGTGGAAATCCCCCTTCTGGATACAACCACTCAAGTCGTGGTGGCGGTCAAGGTGGTTATGGTAACACACAATATGCTCAAGGACGAGGTGCTGCACCCTATGGGTCTGGTAACATGTCTGGTGCTGGTCCTCGAGGTGGAGCTGGAGGCGGCGGTGGTTATGGCGTGGGAGCTCCAAATTATCCACAGAATGGTCCATATCCTGGTAGTTCCGGTACTGGCCGTGGCTCCAATGTGATGGGTGGAAATCGCAACCAACAATATGGATGGCAACAACAATGA 1785 46.16 MMILQTKNIEEKRREEKSLWGNKFAAIGLDSPLSSLFFDLFCVRSCSIPSLVSSSLATPFNSQFRVFREGRLRVQGKTMAVTAPGQLNVNESPSWGSRSVDCFEKLEQIGEGTYGQVYMARELKTGEIVALKKIRMDNEREGFPITAIREIKILKKLHHENVIKLKEIVTSPGPEKDEQGKPDGNKYKGGIYMVFEYMDHDLTGLADRPGMRFSVPQIKCYMRQLLTGLHYCHVNQVLHRDIKGSNLLIDNEGNLKLADFGLARSFSNDHNANLTNRVITLWYRPPELLLGSTKYGPAVDMWSVGCIFAELLHGKPIFPGKDEPEQLNKIFELCGAPDEVNWPGVSKIPWYNNFKPTRPMKRRLREVFRHFDRHALELLEKMLTLDPSQRISAKDALDAEYFWTDPLPCDPKSLPKYESSHEFQTKKKRQQQRQHEETAKRQKLQHPQHARLPPIQQSGQAHAQMRPVPNQPIHGSQQPVAAGPSHHFGKPRGPPGPGRYPGGNPPSGYNHSSRGGGQGGYGNTQYAQGRGAAPYGSGNMSGAGPRGGAGGGGGYGVGAPNYPQNGPYPGSSGTGRGSNVMGGNRNQQYGWQQQ 594
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 42410258 42417442 - CePI673135_02g025380.1 Cec02g2538 197591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g2538 594 ProSitePatterns Serine/Threonine protein kinases active-site signature. 237 249 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec02g2538 594 MobiDBLite consensus disorder prediction 506 525 - -
Cec02g2538 594 ProSitePatterns Protein kinases ATP-binding region signature. 109 132 IPR017441 GO:0005524(InterPro)
Cec02g2538 594 FunFam Cyclin-dependent kinase C-2 90 199 - -
Cec02g2538 594 Pfam Protein kinase domain 103 402 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec02g2538 594 ProSiteProfiles Protein kinase domain profile. 103 402 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec02g2538 594 CDD STKc_CDK9_like 103 402 - -
Cec02g2538 594 MobiDBLite consensus disorder prediction 451 478 - -
Cec02g2538 594 FunFam Cyclin-dependent kinase C-2 200 442 - -
Cec02g2538 594 MobiDBLite consensus disorder prediction 413 594 - -
Cec02g2538 594 Gene3D Phosphorylase Kinase; domain 1 90 199 - -
Cec02g2538 594 MobiDBLite consensus disorder prediction 565 594 - -
Cec02g2538 594 SUPERFAMILY Protein kinase-like (PK-like) 97 410 IPR011009 -
Cec02g2538 594 Gene3D Transferase(Phosphotransferase) domain 1 200 442 - -
Cec02g2538 594 MobiDBLite consensus disorder prediction 415 444 - -
Cec02g2538 594 PANTHER CELL DIVISION PROTEIN KINASE 103 402 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cec02g2538 594 SMART serkin_6 103 402 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2538 Cec-Chr2:42410258 Cec10g1422 Cec-Chr10:28564247 8.10E-272 dispersed
Cec02g2538 Cec-Chr2:42410258 Cec05g0684 Cec-Chr5:5607655 3.40E-97 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71798 PF00069 Pkinase 6.10E-75 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g2538 K08819 - csv:101220936 983.015