Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g2546 ATGGAGTTGGCCGTCCATTCCCCTCTTTCCTTCTCCACTTATTCATCTCACCCTCCCAATTCCTTAATCCCATCCCTACATAGAAGTAGACTCTTCAGTTTTCCGCCATTGTTATCGCCCCGTCTAAGCTTCCAGTTCCGGCCAAAGGGACGATCACTTCTTCAGCCTCTACAAGCTTCCCGTTGGCTTCTGGCACCCGTCGGCGATGGAGAGTGGAAGCATATAGGTTCGAAAGTAGAAATGCCAGATGCTTTCGAAATTGTGTCGAATGAGGTCACTGTTGGCCGCCTTCCTGATAAAGCCGACATTGTAATTCCGGCTGCTACAGTTTCTGCTCTACATGCTCGCATCAAAAACCAAGAAGACAGGCTCTTGGTCATAGATCTAGACAGCACCAATGGGACTTTCATCGATGACAAGAGACTTAACCCTGGGGTTGTTGCTGCTGTATCATCTGGCAATTGCATTACTTTTGGTGACATCCATCTGGCCATGTTTCAGGTCTCAAAGCTGAAAACTGTTGAAGCTGCTACCAAAATCCAAGAAGAATCTGAGGAGCCAATCATGAATCATCTGATCAGTCTCTTTAAGAGTATGCTTGGCCGAATAGAAGTTAGGGGAGTGGAGTTGACTCCACTCCTTGCTTTGCTTAACCGCAACCATCGAAGCCCTGTGATCCGATTCTTCTCTCTTCCTTTGGAAATGCCGACCAGTTTGGTCCCTTCTCACAGACCGGAGCTTCTCACCGTCGCCGTCGCTGTGGTTGCTGTCGGCGTTGCCACTGCCTACTATTTCTACATCACCAAGAAATCCAAACCCAAAGGTTGCTTGGACCCTAATAACTTCAAGGAATTTAAACTAGTTAAACGCACACAGGTTAGCCATAATGTAGCAAAGTTCAGATTCTCTCTTCCGACGCCAACCTCAATTTTGGGTCTGCCGATTGGGCAGCATATCAGCTGCAGAGGAAAAGATAGCGAAGGTGGAGATGTTGTGAAACCTTACACTCCAACCACTTTGGACACAGATGTTGGATACTTTGATTTGGTCATAAAGATGTATCCACAAGGAAGGATGTCCCACCACTTCCGTGAGATGCGTGAAGGTGATTACTTGGCTGTGAAAGGTCCAAAGGGACGATTCAAGTATGCACCTAACGAAGTTGAGGCCTATGGAATGCTTGCTGGAGGCACAGGCATAACTCCTATGTTCCAGGTTGCAAGAGCAATACTAGAAAATCCAGTGGATCACACCAATGTGCATCTTATATATGCTAATGTAACTTATGAAGACATTCTTCTAAAGGAAGAATTGGATAGTCTTGCGGCTAGGTTTCCCACCCGCTTTACTATCTACTATGTGCTCAATCAGCCTCCTGAAGGATGGGATGGTGGTGTTGGCTTCATAACTGAGGAAATGATACGACTACACTGTCCTGCGCCATCCCCTAATGTTCGGATTTTGAGGTGCGGGCCACCCCCCATGAACAAAGCTATGGCTGCTTACCTCAACACTATTGGCCATCCTCCCCAAATGCAGTTCCTGTTCTAA 1551 47.0 MELAVHSPLSFSTYSSHPPNSLIPSLHRSRLFSFPPLLSPRLSFQFRPKGRSLLQPLQASRWLLAPVGDGEWKHIGSKVEMPDAFEIVSNEVTVGRLPDKADIVIPAATVSALHARIKNQEDRLLVIDLDSTNGTFIDDKRLNPGVVAAVSSGNCITFGDIHLAMFQVSKLKTVEAATKIQEESEEPIMNHLISLFKSMLGRIEVRGVELTPLLALLNRNHRSPVIRFFSLPLEMPTSLVPSHRPELLTVAVAVVAVGVATAYYFYITKKSKPKGCLDPNNFKEFKLVKRTQVSHNVAKFRFSLPTPTSILGLPIGQHISCRGKDSEGGDVVKPYTPTTLDTDVGYFDLVIKMYPQGRMSHHFREMREGDYLAVKGPKGRFKYAPNEVEAYGMLAGGTGITPMFQVARAILENPVDHTNVHLIYANVTYEDILLKEELDSLAARFPTRFTIYYVLNQPPEGWDGGVGFITEEMIRLHCPAPSPNVRILRCGPPPMNKAMAAYLNTIGHPPQMQFLF 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 42480680 42485934 - CePI673135_02g025460.1 Cec02g2546 197599

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g2546 516 Gene3D - 374 516 IPR039261 -
Cec02g2546 516 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 280 384 IPR017927 GO:0016491(InterPro)
Cec02g2546 516 SMART FHA_2 91 142 IPR000253 GO:0005515(InterPro)
Cec02g2546 516 PRINTS Cytochrome B5 reductase signature 486 494 - -
Cec02g2546 516 PRINTS Cytochrome B5 reductase signature 392 411 - -
Cec02g2546 516 PRINTS Cytochrome B5 reductase signature 333 340 - -
Cec02g2546 516 PRINTS Cytochrome B5 reductase signature 369 383 - -
Cec02g2546 516 PRINTS Cytochrome B5 reductase signature 430 441 - -
Cec02g2546 516 PRINTS Cytochrome B5 reductase signature 311 322 - -
Cec02g2546 516 ProSiteProfiles Forkhead-associated (FHA) domain profile. 92 142 IPR000253 GO:0005515(InterPro)
Cec02g2546 516 SUPERFAMILY Riboflavin synthase domain-like 276 386 IPR017938 -
Cec02g2546 516 FunFam NADH-cytochrome b5 reductase 275 374 - -
Cec02g2546 516 FunFam Predicted protein 70 172 - -
Cec02g2546 516 PANTHER NADH-CYTOCHROME B5 REDUCTASE 251 516 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Cec02g2546 516 Pfam FHA domain 92 159 IPR000253 GO:0005515(InterPro)
Cec02g2546 516 SUPERFAMILY SMAD/FHA domain 82 166 IPR008984 GO:0005515(InterPro)
Cec02g2546 516 FunFam NADH-cytochrome b5 reductase 374 516 - -
Cec02g2546 516 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 372 511 IPR039261 -
Cec02g2546 516 Gene3D - 74 172 - -
Cec02g2546 516 Pfam Oxidoreductase NAD-binding domain 393 499 IPR001433 GO:0016491(InterPro)
Cec02g2546 516 Pfam Oxidoreductase FAD-binding domain 285 383 IPR008333 -
Cec02g2546 516 CDD FHA 85 163 - -
Cec02g2546 516 CDD cyt_b5_reduct_like 285 516 - -
Cec02g2546 516 Gene3D Translation factors 273 373 - -
Cec02g2546 516 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 430 441 IPR001709 GO:0016491(InterPro)
Cec02g2546 516 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 392 411 IPR001709 GO:0016491(InterPro)
Cec02g2546 516 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 486 494 IPR001709 GO:0016491(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g2546 K00326 - - csv:101219272 506.138
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2546 Cec-Chr2:42480680 Cec04g0619 Cec-Chr4:24760236 1.80E-118 dispersed
Cec02g2546 Cec-Chr2:42480680 Cec11g1604 Cec-Chr11:30327135 5.00E-44 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec05g0388 . 1 133 NADPH P450 reductases AT5G53560 67.7 3.2e-51 198.0
Cec01g0020 . 23 138 NADPH P450 reductases AT5G53560 77.6 2.1e-50 195.3
Cec06g0806 . 1 133 NADPH P450 reductases AT5G53560 63.2 5.3e-46 180.6
Cec05g0388 . 1 132 NADPH P450 reductases AT5G48810 64.2 1.7e-47 185.7
Cec06g0806 . 1 133 NADPH P450 reductases AT5G48810 59.3 1.0e-44 176.4
Cec01g0020 . 23 138 NADPH P450 reductases AT5G48810 61.9 2.0e-40 162.2
Cec05g0388 . 22 133 NADPH P450 reductases AT2G32720 83.9 1.6e-50 195.7
Cec06g0806 . 22 133 NADPH P450 reductases AT2G32720 76.8 2.6e-45 178.3
Cec01g0020 . 18 137 NADPH P450 reductases AT2G32720 64.2 3.3e-40 161.4
Cec04g0619 . 2 281 NADPH P450 reductases AT5G17770 81.1 3.3e-130 461.5
Cec10g1687 . 2 280 NADPH P450 reductases AT5G17770 77.8 9.8e-127 449.9
Cec02g2546 . 244 516 NADPH P450 reductases AT5G17770 72.9 2.1e-116 415.6
Cec05g0388 . 1 133 NADPH P450 reductases AT5G53560 67.7 3.2e-51 198.0
Cec01g0020 . 23 138 NADPH P450 reductases AT5G53560 77.6 2.1e-50 195.3
Cec06g0806 . 1 133 NADPH P450 reductases AT5G53560 63.2 5.3e-46 180.6
Cec05g0388 . 1 132 NADPH P450 reductases AT5G48810 64.2 1.7e-47 185.7
Cec06g0806 . 1 133 NADPH P450 reductases AT5G48810 59.3 1.0e-44 176.4
Cec01g0020 . 23 138 NADPH P450 reductases AT5G48810 61.9 2.0e-40 162.2
Cec05g0388 . 22 133 NADPH P450 reductases AT2G32720 83.9 1.6e-50 195.7
Cec06g0806 . 22 133 NADPH P450 reductases AT2G32720 76.8 2.6e-45 178.3
Cec01g0020 . 18 137 NADPH P450 reductases AT2G32720 64.2 3.3e-40 161.4
Cec04g0619 . 2 281 NADPH P450 reductases AT5G17770 81.1 3.3e-130 461.5
Cec10g1687 . 2 280 NADPH P450 reductases AT5G17770 77.8 9.8e-127 449.9
Cec02g2546 . 244 516 NADPH P450 reductases AT5G17770 72.9 2.1e-116 415.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011793 1 1 1 1 0 4 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 0 30