Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec02g2546 ATGGAGTTGGCCGTCCATTCCCCTCTTTCCTTCTCCACTTATTCATCTCACCCTCCCAATTCCTTAATCCCATCCCTACATAGAAGTAGACTCTTCAGTTTTCCGCCATTGTTATCGCCCCGTCTAAGCTTCCAGTTCCGGCCAAAGGGACGATCACTTCTTCAGCCTCTACAAGCTTCCCGTTGGCTTCTGGCACCCGTCGGCGATGGAGAGTGGAAGCATATAGGTTCGAAAGTAGAAATGCCAGATGCTTTCGAAATTGTGTCGAATGAGGTCACTGTTGGCCGCCTTCCTGATAAAGCCGACATTGTAATTCCGGCTGCTACAGTTTCTGCTCTACATGCTCGCATCAAAAACCAAGAAGACAGGCTCTTGGTCATAGATCTAGACAGCACCAATGGGACTTTCATCGATGACAAGAGACTTAACCCTGGGGTTGTTGCTGCTGTATCATCTGGCAATTGCATTACTTTTGGTGACATCCATCTGGCCATGTTTCAGGTCTCAAAGCTGAAAACTGTTGAAGCTGCTACCAAAATCCAAGAAGAATCTGAGGAGCCAATCATGAATCATCTGATCAGTCTCTTTAAGAGTATGCTTGGCCGAATAGAAGTTAGGGGAGTGGAGTTGACTCCACTCCTTGCTTTGCTTAACCGCAACCATCGAAGCCCTGTGATCCGATTCTTCTCTCTTCCTTTGGAAATGCCGACCAGTTTGGTCCCTTCTCACAGACCGGAGCTTCTCACCGTCGCCGTCGCTGTGGTTGCTGTCGGCGTTGCCACTGCCTACTATTTCTACATCACCAAGAAATCCAAACCCAAAGGTTGCTTGGACCCTAATAACTTCAAGGAATTTAAACTAGTTAAACGCACACAGGTTAGCCATAATGTAGCAAAGTTCAGATTCTCTCTTCCGACGCCAACCTCAATTTTGGGTCTGCCGATTGGGCAGCATATCAGCTGCAGAGGAAAAGATAGCGAAGGTGGAGATGTTGTGAAACCTTACACTCCAACCACTTTGGACACAGATGTTGGATACTTTGATTTGGTCATAAAGATGTATCCACAAGGAAGGATGTCCCACCACTTCCGTGAGATGCGTGAAGGTGATTACTTGGCTGTGAAAGGTCCAAAGGGACGATTCAAGTATGCACCTAACGAAGTTGAGGCCTATGGAATGCTTGCTGGAGGCACAGGCATAACTCCTATGTTCCAGGTTGCAAGAGCAATACTAGAAAATCCAGTGGATCACACCAATGTGCATCTTATATATGCTAATGTAACTTATGAAGACATTCTTCTAAAGGAAGAATTGGATAGTCTTGCGGCTAGGTTTCCCACCCGCTTTACTATCTACTATGTGCTCAATCAGCCTCCTGAAGGATGGGATGGTGGTGTTGGCTTCATAACTGAGGAAATGATACGACTACACTGTCCTGCGCCATCCCCTAATGTTCGGATTTTGAGGTGCGGGCCACCCCCCATGAACAAAGCTATGGCTGCTTACCTCAACACTATTGGCCATCCTCCCCAAATGCAGTTCCTGTTCTAA 1551 47.0 MELAVHSPLSFSTYSSHPPNSLIPSLHRSRLFSFPPLLSPRLSFQFRPKGRSLLQPLQASRWLLAPVGDGEWKHIGSKVEMPDAFEIVSNEVTVGRLPDKADIVIPAATVSALHARIKNQEDRLLVIDLDSTNGTFIDDKRLNPGVVAAVSSGNCITFGDIHLAMFQVSKLKTVEAATKIQEESEEPIMNHLISLFKSMLGRIEVRGVELTPLLALLNRNHRSPVIRFFSLPLEMPTSLVPSHRPELLTVAVAVVAVGVATAYYFYITKKSKPKGCLDPNNFKEFKLVKRTQVSHNVAKFRFSLPTPTSILGLPIGQHISCRGKDSEGGDVVKPYTPTTLDTDVGYFDLVIKMYPQGRMSHHFREMREGDYLAVKGPKGRFKYAPNEVEAYGMLAGGTGITPMFQVARAILENPVDHTNVHLIYANVTYEDILLKEELDSLAARFPTRFTIYYVLNQPPEGWDGGVGFITEEMIRLHCPAPSPNVRILRCGPPPMNKAMAAYLNTIGHPPQMQFLF 516
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
2 42480680 42485934 - CePI673135_02g025460.1 Cec02g2546 197599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec02g2546 516 Gene3D - 374 516 IPR039261 -
Cec02g2546 516 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 280 384 IPR017927 GO:0016491(InterPro)
Cec02g2546 516 SMART FHA_2 91 142 IPR000253 GO:0005515(InterPro)
Cec02g2546 516 PRINTS Cytochrome B5 reductase signature 486 494 - -
Cec02g2546 516 PRINTS Cytochrome B5 reductase signature 392 411 - -
Cec02g2546 516 PRINTS Cytochrome B5 reductase signature 333 340 - -
Cec02g2546 516 PRINTS Cytochrome B5 reductase signature 369 383 - -
Cec02g2546 516 PRINTS Cytochrome B5 reductase signature 430 441 - -
Cec02g2546 516 PRINTS Cytochrome B5 reductase signature 311 322 - -
Cec02g2546 516 ProSiteProfiles Forkhead-associated (FHA) domain profile. 92 142 IPR000253 GO:0005515(InterPro)
Cec02g2546 516 SUPERFAMILY Riboflavin synthase domain-like 276 386 IPR017938 -
Cec02g2546 516 FunFam NADH-cytochrome b5 reductase 275 374 - -
Cec02g2546 516 FunFam Predicted protein 70 172 - -
Cec02g2546 516 PANTHER NADH-CYTOCHROME B5 REDUCTASE 251 516 IPR001834 GO:0004128(PANTHER)|GO:0016491(InterPro)|GO:0022900(PANTHER)
Cec02g2546 516 Pfam FHA domain 92 159 IPR000253 GO:0005515(InterPro)
Cec02g2546 516 SUPERFAMILY SMAD/FHA domain 82 166 IPR008984 GO:0005515(InterPro)
Cec02g2546 516 FunFam NADH-cytochrome b5 reductase 374 516 - -
Cec02g2546 516 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 372 511 IPR039261 -
Cec02g2546 516 Gene3D - 74 172 - -
Cec02g2546 516 Pfam Oxidoreductase NAD-binding domain 393 499 IPR001433 GO:0016491(InterPro)
Cec02g2546 516 Pfam Oxidoreductase FAD-binding domain 285 383 IPR008333 -
Cec02g2546 516 CDD FHA 85 163 - -
Cec02g2546 516 CDD cyt_b5_reduct_like 285 516 - -
Cec02g2546 516 Gene3D Translation factors 273 373 - -
Cec02g2546 516 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 430 441 IPR001709 GO:0016491(InterPro)
Cec02g2546 516 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 392 411 IPR001709 GO:0016491(InterPro)
Cec02g2546 516 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 486 494 IPR001709 GO:0016491(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2546 Cec-Chr2:42480680 Cec04g0619 Cec-Chr4:24760236 1.80E-118 dispersed
Cec02g2546 Cec-Chr2:42480680 Cec11g1604 Cec-Chr11:30327135 5.00E-44 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec02g2546 K00326 - csv:101219272 506.138