Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cec03g0003 | ATGTGTCGATCACATGAGGAATGGGCTTATGTAGCCCTTCTTCTCCTCTGCTTCTCCTCGTCCTTACTAATTGTCGGTGCAGCAGAGATGGTTACCCATCCTTCTGAAGTGGACGCTTTGCTAGTCATCAAAAGAAGTTTGATCGACCCTAATGGAAATCTGAGCAACTGGAACAAAGGAGACCCTTGTAATTCAAACTGGACTGGTGTTCTGTGCTACAATACCACATTGGATGATAACTATCTACATGTTGCTGAATTGCAACTTCTAAATATGAGTTTATCAGGAAATTTGTCACCTGCGCTTGGTCGTTTATCTTACCTGAAAGTTTTGGACTTTATGTGGAATGAGATAAATGGGGAAATACCAAGAGAGATAGGCAACCTAACATCCTTAGAACTGTTGCTTCTGAACGGGAACCAGTTGTCAGGTCCATTACCTGAGGATCTTGGTAATCTTCTACATTTGGACAGAATACAGATTGACCAGAACCATATATCAGGACCAATACCTAAGTCTTTTGCAAACTTAAAAGCAACAAAGCATTTTCACATGAATAACAACTCTATCAGTGGTGAAATCCCATCTGAGCTATCTGGATTGCCCAATCTTGTCCACTTCCTTCTTGACAATAACAACTTATCGGGGAAACTTCCACCTGAGTTGTTTCAATTGCCAAACTTAGAAATACTTCAACTTGACAACAACAACTTTAGTGGGACCACAATACCAGATTCTTATGGAAGTATGACTAAATTGCTGAAATTGAGTCTAAGGAACTGTACCTTGCAAGGATCCATTCCAGATCTGAGCAGAATAAAGAACCTCGGTTATCTAGATCTAAGTTCCAATCAATTAAGTGGATTGATACCACGAAGTAAACTCTCTGAGAATATCACAACCATCATTTTATCCAACAACCATCTTACTGGCACCATACCATCCAGCCTTTCGGATCTACCACATCTTCAGAAATTGTCAGTTGCAAATAATTCATTGAACGGCTCTGTTCCATCCACCATATGGCAAAGCAGGACGCTCAATCCTCTGGACAGCCTTACAATAGAGTTGCAGAACAATAATTTTTCAAATATTGTGGGAAGCATCCATCTTCCTCTGAATGTTTCTGTCTGGCTTCATGGAAATCCTGCTTGTGCTAATAACAGCCTGCTGGACTTTTGTGGATCTGAGAGTGAGGATATAATTGACGTACCAACAAATAACACTCTTGGCTGTTCTGGCTCAATATGCCCACCTTCTTACGAATGTTACACGGCGAAATGTCCCTCATCTTGTCTCTGTTCTGCACCTCTTCTAATTGGATATCGTTTGAAAAGTCCTGGATTCTCACGTTTCAGTCCATATCAACAAATGTTTGAGGAGTATCTGACCAGTGGTCTTAAGGTACATCTTGAACAGTTGGACATTGGTTCTCCTGTGTGGGAAAAAGGACCTCGATTAAGAATGAACCTGAAGCTTTTCCCTCTGTATGTTGCTGATAGCAATAGTTCTCACATGTTCAATGACAGCGAGGTTTTACGAATTGTTTCCAAGTTTACAAATTGGAAAATTCAAGATAGCGATATATTTGGACCATATGAACTTCTCAGCTTGTCAATATCAGATGTTTATAAGAACGTATTTGTCACACCATCATCTGATTCTACTATAAGTAAAGGGGCATTGGCTGGAATAATATTAGGAGCAATTGCTGGCGGAGCAATGTTATCTGCAGTTGTTTTTATTTTTATTATCAGATCACGTGTGAGAGGCCACCACATCTCAAGAAGGCGTCATCTGTCAAAAACCTCCATAAAGATTGAGGGCGTAAAGGAATTTGGTTACCGTGAAATGGCCCTAGCTACAAACAATTTTCATTATTCCACGGAAGTTGGTCAAGGTGGTTATGGAAAGGTTTACAAAGGAATTCTAGCAGATAGCACAACTGTTGCTATCAAACGTGCACAGGAGGGCTCGCTACAGGGTGAAAAAGAGTTCCTAACTGAAATACAATTATTGTCAAGGTTACACCACCGAAATCTTGTGGCTTTGATTGGCTATTGCGATGAGGAAGGGGAGCAGATGTTGGCTTATGAGTTTATGTCAAATGGCACGCTGAGGGATCACCTTTCTGTCAATTCTGCAGAACCTTTGAGTTTTGCCACAAGATTAAAAGCTGCTCTGGGTGCAGCTAAGGGAATTCTGTACCTGCACACGGAAGCTGATCCTCCAATATTCCACCGAGATATCAAGTCCAGCAACATATTATTAGACTCTAAATATGTAGCAAAGGTTGCTGATTTTGGACTTTCACGACTTGCACCTCTACCCGATGCAGAAGGCGATGTGCCTGCTCATGTATCAACAGTAGTAAAAGGGACACCGGGTTATCTTGATCCAGAGTACTTTTTGACTCATAAATTGACAGATAAGAGTGATGTTTATAGCCTTGGGGTTGTGTTTTTGGAGCTTTTGACTGGGAGGCACCCAATCTCACATGGCAAGAACATCGTCAGGGAGGTTAACGGTGCATATCAGTCTGGAAAAATCTTCTCAATAATCGATGGTCGACTGGGATCTTATCCCGCTGAATGCGTAGAAAAATTTGTGACATTGGCGTTGAAGTGTTGCCAAGAAGATACGGATGCACGCCCTTCAATGGCTGAAGTTGTTCGAACGCTTGAAAGTATCTGGCTTATGCTGCCCGAGTCTGATACGAAAATTGCAGAGCCTTTGATCACGGATGTCATAAAAGTGACTACCCCCCCATCCTCATCATCCAACATGAACAACTATTACATATCAGAAGTATCTGGCAGTGACCTCGTAAGTGGAGTAACTCCGACCATCACGCCCAGATAG | 2862 | 41.72 | MCRSHEEWAYVALLLLCFSSSLLIVGAAEMVTHPSEVDALLVIKRSLIDPNGNLSNWNKGDPCNSNWTGVLCYNTTLDDNYLHVAELQLLNMSLSGNLSPALGRLSYLKVLDFMWNEINGEIPREIGNLTSLELLLLNGNQLSGPLPEDLGNLLHLDRIQIDQNHISGPIPKSFANLKATKHFHMNNNSISGEIPSELSGLPNLVHFLLDNNNLSGKLPPELFQLPNLEILQLDNNNFSGTTIPDSYGSMTKLLKLSLRNCTLQGSIPDLSRIKNLGYLDLSSNQLSGLIPRSKLSENITTIILSNNHLTGTIPSSLSDLPHLQKLSVANNSLNGSVPSTIWQSRTLNPLDSLTIELQNNNFSNIVGSIHLPLNVSVWLHGNPACANNSLLDFCGSESEDIIDVPTNNTLGCSGSICPPSYECYTAKCPSSCLCSAPLLIGYRLKSPGFSRFSPYQQMFEEYLTSGLKVHLEQLDIGSPVWEKGPRLRMNLKLFPLYVADSNSSHMFNDSEVLRIVSKFTNWKIQDSDIFGPYELLSLSISDVYKNVFVTPSSDSTISKGALAGIILGAIAGGAMLSAVVFIFIIRSRVRGHHISRRRHLSKTSIKIEGVKEFGYREMALATNNFHYSTEVGQGGYGKVYKGILADSTTVAIKRAQEGSLQGEKEFLTEIQLLSRLHHRNLVALIGYCDEEGEQMLAYEFMSNGTLRDHLSVNSAEPLSFATRLKAALGAAKGILYLHTEADPPIFHRDIKSSNILLDSKYVAKVADFGLSRLAPLPDAEGDVPAHVSTVVKGTPGYLDPEYFLTHKLTDKSDVYSLGVVFLELLTGRHPISHGKNIVREVNGAYQSGKIFSIIDGRLGSYPAECVEKFVTLALKCCQEDTDARPSMAEVVRTLESIWLMLPESDTKIAEPLITDVIKVTTPPSSSSNMNNYYISEVSGSDLVSGVTPTITPR | 953 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
3 | 62714 | 83215 | - | CePI673135_03g000030.1 | Cec03g0003 | 197627 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cec03g0003 | 953 | FunFam | Probable LRR receptor-like serine/threonine-protein kinase At1g06840 | 34 | 195 | - | - | |
Cec03g0003 | 953 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 745 | 757 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cec03g0003 | 953 | CDD | STKc_IRAK | 631 | 897 | - | - | |
Cec03g0003 | 953 | ProSitePatterns | Protein kinases ATP-binding region signature. | 631 | 653 | IPR017441 | GO:0005524(InterPro) | |
Cec03g0003 | 953 | SMART | serkin_6 | 625 | 899 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cec03g0003 | 953 | FunFam | Leucine-rich repeat protein kinase family protein | 590 | 700 | - | - | |
Cec03g0003 | 953 | FunFam | LRR receptor-like serine/threonine-protein kinase HSL2 | 701 | 910 | - | - | |
Cec03g0003 | 953 | Gene3D | Phosphorylase Kinase; domain 1 | 596 | 700 | - | - | |
Cec03g0003 | 953 | SUPERFAMILY | Protein kinase-like (PK-like) | 611 | 926 | IPR011009 | - | |
Cec03g0003 | 953 | Pfam | Protein kinase domain | 626 | 892 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cec03g0003 | 953 | SMART | LRR_typ_2 | 273 | 298 | IPR003591 | - | |
Cec03g0003 | 953 | SMART | LRR_typ_2 | 320 | 344 | IPR003591 | - | |
Cec03g0003 | 953 | SMART | LRR_typ_2 | 129 | 153 | IPR003591 | - | |
Cec03g0003 | 953 | SMART | LRR_typ_2 | 201 | 225 | IPR003591 | - | |
Cec03g0003 | 953 | Gene3D | Ribonuclease Inhibitor | 31 | 295 | IPR032675 | - | |
Cec03g0003 | 953 | PANTHER | RECEPTOR-LIKE PROTEIN 55 | 54 | 895 | - | - | |
Cec03g0003 | 953 | Gene3D | Ribonuclease Inhibitor | 296 | 385 | IPR032675 | - | |
Cec03g0003 | 953 | ProSiteProfiles | Leucine-rich repeat profile. | 275 | 296 | IPR001611 | GO:0005515(InterPro) | |
Cec03g0003 | 953 | Pfam | Leucine rich repeat | 155 | 214 | IPR001611 | GO:0005515(InterPro) | |
Cec03g0003 | 953 | SUPERFAMILY | L domain-like | 49 | 411 | - | - | |
Cec03g0003 | 953 | Gene3D | Transferase(Phosphotransferase) domain 1 | 701 | 907 | - | - | |
Cec03g0003 | 953 | ProSiteProfiles | Protein kinase domain profile. | 625 | 899 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cec03g0003 | 953 | Pfam | Leucine rich repeat N-terminal domain | 33 | 72 | IPR013210 | - | |
Cec03g0003 | 953 | Pfam | Leucine Rich Repeat | 298 | 320 | IPR001611 | GO:0005515(InterPro) | |
Cec03g0003 | 953 | Pfam | Leucine Rich Repeat | 275 | 292 | IPR001611 | GO:0005515(InterPro) | |
Cec03g0003 | 953 | Pfam | Leucine Rich Repeat | 131 | 153 | IPR001611 | GO:0005515(InterPro) | |
Cec03g0003 | 953 | Pfam | Leucine Rich Repeat | 227 | 246 | IPR001611 | GO:0005515(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cec03g0003 | Cec-Chr3:62714 | Cec04g0749 | Cec-Chr4:26760230 | 2.30E-188 | dispersed | |
Cec11g0517 | Cec-Chr11:5497927 | Cec03g0003 | Cec-Chr3:62714 | 7.90E-56 | dispersed | |
Cec11g1173 | Cec-Chr11:24038135 | Cec03g0003 | Cec-Chr3:62714 | 5.20E-51 | dispersed | |
Cec05g1184 | Cec-Chr5:10793901 | Cec03g0003 | Cec-Chr3:62714 | 3.60E-66 | transposed | |
Cec03g0003 | Cec-Chr3:62714 | Cec04g0758 | Cec-Chr4:26923897 | 6.40E-69 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
71800 | PF00069 | Pkinase | 8.50E-48 | CL0016 | Cec | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cec03g0003 | - | - | - | 0.0 |