Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0009 ATGGCGGCTTCCAACCGCTGCATGAACACTTCTTGCAGAGCCGCCATCCCCCACGATTGGACCAAAGGATGGCCTCTGGGATCCGCCGGATACGCACATCTCTGCCTCAACTGCGGATCCGCTTATGAAAATTTAGTCTTCTGTGATACATATCACTTAGAGGAAACTGGTTGGAGGGATTGCAGTTTTTGTGGCAAGAGAATTCACTGTGGATGTATAGCTTCTAAGTCTATGTTTGAATGTCTGGATTATGGAGGTATTGGGTGCACTAGCTGTGTGAAAAGATCTCGACTTGGAGTGATCCGGAGAGATGAAATTTCTAATGGCTTTGATGCAGTGACAGTTGGTAATGCTGGCTTTCTGCCACCTACTTCTGTCGAGGATCAAGTGGTTCGAAATGGCATTAATGAGGAAAAGCTTTTACAGTTGTGTAACATCATGGAGGCAAATGAACCCAACCACTTTCAGCAATCTCAAAGAGTTGACAGAAGTGCATCTCCTGCACAAAACAGAGGAGAAAATCTCAGGAGCCCATTTGGAGAAGTTAGATCAAGCTTTTTTAATATGAATAAGCTACCTGTTAAATGCCAACCATCTGTTGGTTCATTTACGTACTCCAAACTAGATACTAGCAGACCACACTTAGAACTAAAAGATATGAAAGAATCCCTAAGTCAGCCATCGTTAAATATAACTTTGGGAGTTCCATTAGGTACTCCAAACTTTGTGGTACCCTTTTCAGGAAGTGCTGCTGAAGAGGATGAAAAGAGCATTCTGCCATTTCAACAGGGTCAAAGATCTCGTCCAATTTTTCCCAAGCTCATAAAAACTGGGACCGCAGTTAATTCCGAAGCAAGAAAGGGAATGGCACCTCTGGTACGTATTGCTCGGCCACCTGCTGAAGGTCGAGGTAAAAACCAACTTCTTCCAAGGTACTGGCCAAGGATTACCGACCAAGAGCTAGAACAATTATCTGGAGATTTGAATTCTACTATTGTTCCACTCTTTGAAAAGGTGTTGAGTGCTAGTGATGCTGGTCGGATTGGTCGTTTGGTTCTGCCAAAAGCATGTGCTGAAGCATATTTCCCCCCTATCTCCCAATCAGAAGGTCTTCCTGTTAGGATTCAAGATGTGAAGGGGAATGAATGGACATTTCAGTTCAGATTTTGGCCTAACAACAACAGCAGAATGTATGTTCTGGAGGGCGTTACTCCTTGCATACAATCCATGCAATTAAGAGCTGGTGATACTGTCACTTTTAGTCGGATAGATCCTGGAGGTCAATTAGTCATGGGATTTCGAAAAGCAACAAATTCTACTGATATACAGGATACGAAGATCCCTACACTTTCTAATGGCTCTCATTCGGGTGACGCCTCATTCTCTGGGGTCTTTCAGAATTTGCCTTTAAGAGCTGAAGGAGATACTAGTTTGCGTAAAAGTGAAAATTCTGGGGGAAGGACAAATGATGCTTCAGGACAACAACCAGTGTTAACCATAGAGAAGAAAGGGGCTCGAAACATTGGGTCTAAAAACAAGAGGTTGCTCATGCATAGTGAAGATGCTTTGGAGTTAAGACTCACTTGGGAAGAAGCTCAAGATCTACTCCGTCCACCACCAAGTGCAAATCCCACCATTATCACTATTGATGACCATGAATTCGAAGAGTATGATGAACCTCCAGTTTTTGGCAAGAGGACTATATTCACTGTCCGACCAACTGGGGAACAGAAACAATGGGCTCAGTGTGATGATTGCTCAAAATGGCGGAGGTTGCCTGTGGATGTTCTTCTCCCTCCAAAGTGGAGTTGTCCAGATAATGTTTGGGATTTGAGCAGATGTACATGTTCTGCACCAGAAGAGATCAGCACAAAGGAACAAGACAATCTTCTAAGAGCGAGTAAAGATTTTAAGAAACGTAAAATCATGAAGAGCCAGAAGTCCATTCAGGAACTTGAGCCTTCTGGTTTGGATGCGCTAGCCAGTGCTGCTGTTCTGGGTGATAGTATGGCTGACTTGCAGGAATCAGGTACGACGACCAGGCATCCTCGGCACCGACCAGGATGCACTTGCATCGTGTGCATTCAGCCTCCAAGTGGGAAGGGGAAGCATAAATCTACATGCACATGCAATGTCTGCTTGACTGTAAAACGCCGTTTTAAAACACTTATGCTGCGCAAGAAGAAACGCCAATCAGAACGTGAAGTGGAAACTCTGCTCAAGGATAGGAATCCACAGTTCGATGAAACAGGAATGGGTGGGACACTGAGGGGTACGTCTCTGCAAACAAACTATTTAGAGAATGACGGAAGCCAGAGCAGGATAAAAGATGAGGAGGCTGCAAATAGCAGTGGGCAAATTGACTTGAACTGCCACCCCGACCGGGAGGACATGGAACTGGAGGGAGCAGGATTAAGCATGATGAGTCTTGTGGAGGCTGCCAGCCAACCTTTAGATAGCTATTCAAAGCAAATTGGCATCTCCAGTGTCACGAGTGAGCAGCAGTCCAGTCAACCAAGTAGCGTGGAGAGTGAGAGACGCCTGTCTGAGGAATCCGGCCGAGGATCTCTTTCTATCTTGTCCGAGTGTTCTGAGAAGATTCCTAAGCTCAGGAAGGCAAGACTGGAGCTTGAAGCACTGTACGAGGGGGTGCCAGACGATTCGGTTAATCTCACTTTTCGACATCTCACGGATGTCAATCTTCAACCCAACTCCTCTTTTGAAAAGAGAAGAGGCACCCCATCAATTCCAATTCCAATCCCAAGAGATAATGAGACTACCCCATTAAACAAACTCCCCAGCCTAGACTTCAACAGAGCTCTGCAAGCAGCCAACCAACAGTCCCACCCCGATACCAAAATCAGCCTTCACCCGAGTGCGCAGGTAGGTGGAAGTGGGAGTGCCGGCGACATTCAAAGCCATGCGAAGTCAGAGCATGTGGGTGGGTTAAGGCCGGCTTTGGAGTACACTGCGGCCTACGAGGAGGCAAGCCGCATCAGCGGTATGAGTTCCATGTATCAGCATCACAGGGCCACGGCCGGGACCGGGAGACGCCGCCCTGGGATTCCTCACTCCAATATATGCGCCAACTGCACCACCTACATCTATATCTTCCGACATCGTTGCCTGGTCTGTGGAAGAGTTTACTGCCGGCAATGCGTAAGAATAGGGATGGGGGAGATGACGGAGGGAAGAAAGTGTATGGAGTGTTTGGGAAGAAAATTCAGCCACAGATACATAGGGAAGGCAGGAGATGTGGGTTGCTTCGGCTGGAGGTACTCAACTGCGGTGAAGCAGGCGGAGCTCAAGTGGGCGGAGAAAGGGCCTCGCCGGAAAGGAGAGAGAAGGTACGGTGGTGGCGTCACCAACTCCATAAGCATGATGTCGGCAAGTCAGAGCCCATGGGCACCCACCACCACCAGCGTGGATGTTTCCACCGTTTACAGCTCTCGTTTCGCCGTCATGTCGTCCCCGTCCCTGTCCCCTCATTCTCCGGCTCACCGCCACCATTTACCCTTTTAG 3522 47.61 MAASNRCMNTSCRAAIPHDWTKGWPLGSAGYAHLCLNCGSAYENLVFCDTYHLEETGWRDCSFCGKRIHCGCIASKSMFECLDYGGIGCTSCVKRSRLGVIRRDEISNGFDAVTVGNAGFLPPTSVEDQVVRNGINEEKLLQLCNIMEANEPNHFQQSQRVDRSASPAQNRGENLRSPFGEVRSSFFNMNKLPVKCQPSVGSFTYSKLDTSRPHLELKDMKESLSQPSLNITLGVPLGTPNFVVPFSGSAAEEDEKSILPFQQGQRSRPIFPKLIKTGTAVNSEARKGMAPLVRIARPPAEGRGKNQLLPRYWPRITDQELEQLSGDLNSTIVPLFEKVLSASDAGRIGRLVLPKACAEAYFPPISQSEGLPVRIQDVKGNEWTFQFRFWPNNNSRMYVLEGVTPCIQSMQLRAGDTVTFSRIDPGGQLVMGFRKATNSTDIQDTKIPTLSNGSHSGDASFSGVFQNLPLRAEGDTSLRKSENSGGRTNDASGQQPVLTIEKKGARNIGSKNKRLLMHSEDALELRLTWEEAQDLLRPPPSANPTIITIDDHEFEEYDEPPVFGKRTIFTVRPTGEQKQWAQCDDCSKWRRLPVDVLLPPKWSCPDNVWDLSRCTCSAPEEISTKEQDNLLRASKDFKKRKIMKSQKSIQELEPSGLDALASAAVLGDSMADLQESGTTTRHPRHRPGCTCIVCIQPPSGKGKHKSTCTCNVCLTVKRRFKTLMLRKKKRQSEREVETLLKDRNPQFDETGMGGTLRGTSLQTNYLENDGSQSRIKDEEAANSSGQIDLNCHPDREDMELEGAGLSMMSLVEAASQPLDSYSKQIGISSVTSEQQSSQPSSVESERRLSEESGRGSLSILSECSEKIPKLRKARLELEALYEGVPDDSVNLTFRHLTDVNLQPNSSFEKRRGTPSIPIPIPRDNETTPLNKLPSLDFNRALQAANQQSHPDTKISLHPSAQVGGSGSAGDIQSHAKSEHVGGLRPALEYTAAYEEASRISGMSSMYQHHRATAGTGRRRPGIPHSNICANCTTYIYIFRHRCLVCGRVYCRQCVRIGMGEMTEGRKCMECLGRKFSHRYIGKAGDVGCFGWRYSTAVKQAELKWAEKGPRRKGERRYGGGVTNSISMMSASQSPWAPTTTSVDVSTVYSSRFAVMSSPSLSPHSPAHRHHLPF 1173
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 122187 133871 + CePI673135_03g000090.1 Cec03g0009 197633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0009 1173 ProSiteProfiles Zinc finger CW-type profile. 574 624 IPR011124 GO:0008270(InterPro)
Cec03g0009 1173 CDD B3_DNA 334 435 IPR003340 GO:0003677(InterPro)
Cec03g0009 1173 SMART B3_2 336 436 IPR003340 GO:0003677(InterPro)
Cec03g0009 1173 MobiDBLite consensus disorder prediction 155 173 - -
Cec03g0009 1173 Pfam CW-type Zinc Finger 579 622 IPR011124 GO:0008270(InterPro)
Cec03g0009 1173 MobiDBLite consensus disorder prediction 481 496 - -
Cec03g0009 1173 MobiDBLite consensus disorder prediction 475 496 - -
Cec03g0009 1173 MobiDBLite consensus disorder prediction 904 927 - -
Cec03g0009 1173 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS07G0563300 4 844 - -
Cec03g0009 1173 Pfam B3 DNA binding domain 336 435 IPR003340 GO:0003677(InterPro)
Cec03g0009 1173 SUPERFAMILY DNA-binding pseudobarrel domain 333 437 IPR015300 -
Cec03g0009 1173 Gene3D - 314 441 IPR015300 -
Cec03g0009 1173 MobiDBLite consensus disorder prediction 946 972 - -
Cec03g0009 1173 MobiDBLite consensus disorder prediction 829 855 - -
Cec03g0009 1173 MobiDBLite consensus disorder prediction 770 792 - -
Cec03g0009 1173 MobiDBLite consensus disorder prediction 745 764 - -
Cec03g0009 1173 FunFam B3 domain-containing transcription repressor VAL1 314 441 - -
Cec03g0009 1173 ProSiteProfiles B3 DNA-binding domain profile. 336 437 IPR003340 GO:0003677(InterPro)
Cec03g0009 1173 MobiDBLite consensus disorder prediction 829 843 - -
Cec03g0009 1173 Gene3D - 571 623 - -
Cec03g0009 1173 MobiDBLite consensus disorder prediction 155 176 - -
Cec03g0009 1173 MobiDBLite consensus disorder prediction 946 979 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0009 Cec-Chr3:122187 Cec10g2279 Cec-Chr10:36979209 5.00E-217 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29156 PF02362 B3 5.30E-16 CL0405 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0009 K09287 - csv:101214226 1432.54