Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0059 ATGGCGAAAACGGCGGCGCTTTCGTGGACGCGAAGTAAGTGTCTCATCGGAAAGGGCTCCTTTGGAACAGTGAGTGTCGGAATCGGGAAATCGGACGGTCGGATTTTCGCGGTGAAATCTGTGGAGCAGAGTAATGGATTTCGGCGACAAATTGAGTGTTTAGAGAACGAAATTCAGATTCTCCGATCCTTGAATTCGCCTTACGTTGTGGGGTTTCTTGGCGATGATGTTTCTGTTGAGTCTCCCACGACGTCGTTTCGAAATCTGCACATGGAGTATTTGCCAGGTGGCACCGTTGCCGACGATCCCACCGGGGCCGGCGGTGAGAAGCTTTTACGGGAGAGAACATGGTGCCTCGTTTCGGCTCTGAGTTACATTCACTCGAAAGGAATTGTCCATTGTGATGTTAAAGGGAGGAACATTTTGATCGGATTGAATCCCGGGGTCGTGAAATTGGCTGATTTCGGCTCTGCAATTGAGCTTTCAGGCGCCGACGACAGGTGTCGGGGTTCGGTTGCGCCACGTGGGAGTCCACTGTGGATGGCGCCGGAGGTGGTCCGGGGAAAATTTCAGGGGCCGGAATCGGATGTTTGGTCCGTTGGGTGCACGGTCATTGAAATGGTCACCGGAAAACCGGCGTGGGAAGATTTCGGAGCCGATACGCTGAGTCGAATCGGATTTTCGGATGATTTGCCGGAGTTTCCAACACGGTTGTCAGAAGTCGGCCGGGATTTTCTCCGGAAGTGTCTTAGAAGGAATCCTAGTGAACGGTGGAGCTGTGATCGGCTGCTGCAGCATCCATTTCTGGCGGCGGCGGCCTCGCCGGAGATTGCTGTTGAGAATTCCCCCAGGTGTGTGCTTGACTGGGTCAACGGCAGTTTCTCCGACGAAGAGGAGGAAGTTCAGATCGCCAAGGAAACCTCCGGCTCCGGTGGGCAGGAAAGTGAGATCTCTGCTAAGGAAAGAATTGGGAAGTTGAGTACGAGTGAATGGCCGAATTGGGAATCGGACGGTTGGTCGCCGGTGAGAAGATGTTGCAGTGAAGCGGCGGCGGAGACGGAGGCAAGCGGTCGGGAAGAAGAAAAAGAAGGGAGAGGGGCAGAATGGGAATATGTAAATTTGAGAGGGGTAGAAGGGGGAATGGAGGGGACAAGTTCGGAATATTCGGAGTTTGTAACAGACAATCACGGAAAATTGGGTGCCGATTATTCAAATCCTGGCGGTAAGAAAATTTCGGAGCGGCCACGTAATAATTACGGCGGCGCTGACGGTGACGGTGGCGTTACCGGTGGATTAAGTTTCCGGCGGTGGGGGTTTGAAGGATGTGCAATTACAACAATAACCTCGTGGATATACTCAATTGAATTGATATTATGTTATTATTGGAAAATATTAATGAAGCAATTGGTGTTATTTGGGAATTACACTTTATTACCTTTCTTTTCTGCCTAA 1452 51.24 MAKTAALSWTRSKCLIGKGSFGTVSVGIGKSDGRIFAVKSVEQSNGFRRQIECLENEIQILRSLNSPYVVGFLGDDVSVESPTTSFRNLHMEYLPGGTVADDPTGAGGEKLLRERTWCLVSALSYIHSKGIVHCDVKGRNILIGLNPGVVKLADFGSAIELSGADDRCRGSVAPRGSPLWMAPEVVRGKFQGPESDVWSVGCTVIEMVTGKPAWEDFGADTLSRIGFSDDLPEFPTRLSEVGRDFLRKCLRRNPSERWSCDRLLQHPFLAAAASPEIAVENSPRCVLDWVNGSFSDEEEEVQIAKETSGSGGQESEISAKERIGKLSTSEWPNWESDGWSPVRRCCSEAAAETEASGREEEKEGRGAEWEYVNLRGVEGGMEGTSSEYSEFVTDNHGKLGADYSNPGGKKISERPRNNYGGADGDGGVTGGLSFRRWGFEGCAITTITSWIYSIELILCYYWKILMKQLVLFGNYTLLPFFSA 483
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 593981 595432 - CePI673135_03g000590.1 Cec03g0059 197683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0059 483 Coils Coil 44 64 - -
Cec03g0059 483 Pfam Protein kinase domain 15 269 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec03g0059 483 ProSitePatterns Protein kinases ATP-binding region signature. 16 39 IPR017441 GO:0005524(InterPro)
Cec03g0059 483 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 5 270 IPR052751 GO:0004672(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cec03g0059 483 ProSiteProfiles Protein kinase domain profile. 10 269 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec03g0059 483 Gene3D Transferase(Phosphotransferase) domain 1 5 323 - -
Cec03g0059 483 SMART serkin_6 10 269 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec03g0059 483 SUPERFAMILY Protein kinase-like (PK-like) 14 284 IPR011009 -
Cec03g0059 483 FunFam Serine threonine protein kinase putative 7 327 - -
Cec03g0059 483 CDD STKc_MAPKKK 8 269 - -
Cec03g0059 483 ProSitePatterns Serine/Threonine protein kinases active-site signature. 131 143 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0059 Cec-Chr3:593981 Cec04g1887 Cec-Chr4:37408096 5.50E-53 dispersed
Cec03g0059 Cec-Chr3:593981 Cec02g0926 Cec-Chr2:12204173 1.30E-57 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71801 PF00069 Pkinase 5.10E-53 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0059 - - - 0.0