Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0075 ATGGGTTTGAATGAGCCGCTGGTATTTGGGGATTTGGAGATCAATGGAGGTGGCGAGACGGCGGCGGTTGCGGTGGTGAGGTTTGGGTTGGTTAGAGATTTGTGGGGAAATTTGGTGAAAGTGGTTTTTGGAACGAAGCTTGCTCTGCTTTTTCCGGCCATCCCTTTGGCTATGGCGGCGGAATTTTACAGCTTTGGAAGAACATGGACATTTGGTTTGAGCTTACTTGGATTGGCCCCACTTGCAGAACGTGTCAGTTTTCTGACTGAGCAGATTGCATGCTTCACGGGGGCAACAGTTGGTGGGCTAGTGAATGCAACATGTGGGAATGCAACAGAGTTAATAATAGCAATATTTGCTTTGCATCAAAACAAAGTTCATGTCTTGAAGTTTTCTCTTTTGGGTTCTATTCTCTCCAATTTACTTCTAGTCCTTGGCACATCCCTTTTCTTCGGTGGCTTATCCAATCTCAACAAGCAACAAACTTTCAACCCAAAAGTGGCCAATGTGAGCTATGTGGTGTTACTGTTGGGATTGGTATGCCAAATGCTGCCATTGATGTTCACATTTGCATCTCCCAAAATCTCAACAGATTTTTCTTTACTTCAATTATCAAGAACTTGCAGCCTTCTAATGCTCACAGCATACATTGCTTATGTCTTCTTCCAGTTGAAAACCCATCACCAATTTTTTGGTCTACCACAGGAGGAAGAGGATGAGGAAGAAAGGGCAGTGGTTGGATTTTGGAGCTCATTTGGTTGGTTGGTTGGTATGACCATAGTCATAGCTATTTTATCACAATACATTGTGGCAACAATTGAGGATGCATCAAAATCATGGGGAGTTTCAGTGAGCTTTATAAGCATAATTATGCTACCAATTATGGGCAATGCAGCAGAACATGCTGGATCAATTATTTTTGCTGTCAAGAACAAATTGGATATAACACTAGGGATAGCCTTGGGATCTGCAGCCCAAATTTCCCTATTTGTGGTGCCCTTGAGTGTGATTATTGGGTGGTGCATGGGCATCAAAATGGATCTTGATTTTGGTATACTTGAAACAACTTCTCTTGCCTTTACCATCATCTTGACCATCTTCACCTTACAGGATGGAAGTTCACATTACATCAAAGGAATGGTAAAGATAAGGGCGTGCAAGGCAGTTGACGGGATGCTATTGTATGAGCTTAAGAAACTATTTTGA 1206 42.45 MGLNEPLVFGDLEINGGGETAAVAVVRFGLVRDLWGNLVKVVFGTKLALLFPAIPLAMAAEFYSFGRTWTFGLSLLGLAPLAERVSFLTEQIACFTGATVGGLVNATCGNATELIIAIFALHQNKVHVLKFSLLGSILSNLLLVLGTSLFFGGLSNLNKQQTFNPKVANVSYVVLLLGLVCQMLPLMFTFASPKISTDFSLLQLSRTCSLLMLTAYIAYVFFQLKTHHQFFGLPQEEEDEEERAVVGFWSSFGWLVGMTIVIAILSQYIVATIEDASKSWGVSVSFISIIMLPIMGNAAEHAGSIIFAVKNKLDITLGIALGSAAQISLFVVPLSVIIGWCMGIKMDLDFGILETTSLAFTIILTIFTLQDGSSHYIKGMVKIRACKAVDGMLLYELKKLF 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 776777 786743 + CePI673135_03g000750.1 Cec03g0075 197699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0075 401 Gene3D - 243 385 IPR044880 -
Cec03g0075 401 Gene3D - 96 237 IPR044880 -
Cec03g0075 401 NCBIfam calcium/proton exchanger 52 383 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
Cec03g0075 401 Pfam Sodium/calcium exchanger protein 68 224 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cec03g0075 401 Pfam Sodium/calcium exchanger protein 251 381 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Cec03g0075 401 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 32 381 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0075 Cec-Chr3:776777 Cec07g1539 Cec-Chr7:30966589 8.90E-81 dispersed
Cec10g2206 Cec-Chr10:36470850 Cec03g0075 Cec-Chr3:776777 8.20E-116 wgd
Cec03g0075 Cec-Chr3:776777 Cec04g0836 Cec-Chr4:28101446 2.20E-124 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0075 K07300 - csv:105436053 611.298