Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0117 ATGCGTGTCAAAAAGGAAGTCTCTCTCTTGTCGCGCTGCTCCAAGCTTATTGGGCCACGTTTCCACCACCTCCCCAAACTAATTCTACGCGTGTCCTCTTCTGATCAACCCACCCCTTCTCAATCAACGGCTCAGATCTTTCCATTCACTACGTCACGCACTTTACTACCTCTTCGATCTGCCCGTCTCTCCCCGGGTAGCTACCCTTGCCGTCGCCGTCGTCGTCGTCGTCGGCTTATTTCGAAGATTGAAGTAATCAACTGCGGCTGGGGTAGGGGGGAGGGGATATTAAAGAACTTAGTAATGGCGGAGATTTGCTGTAAAGTGATGAGTGAGAGTGAGGCGTCGTCATCCTGCGAGCCGAGCTCGCGAGTGGCTAGACGTCGGAGAATGGAGATCAGGAGGTGTAAATTTGTCGCCGGAGTTGCTCCGTCGGAGACTGAGACTGTTGCGAAGAGGCAGAAGCTGGAGGATCGAGCTACGTCAATATCCAGAGACTGTGATAACGCAGTCCAGAATTGTGATTCGGTAGAAGAAGAAACGGTCGGGAGATTTGTGGCCGGAGAGGTTTCGACGAAGGAGGTATCAACTCCTCTGTCTCGGGAATCTCCCTCTGGCGAAGTGATTCCGAAGTTCGGATTCTCTTCTGTTTGTGGAAGGCGGAGAGATATGGAGGATGCGGTGGCGGTTCATCCATCGCTTTGTTTGACAGACAAGAAAGCCACCGATATGTTGCACTTCTTCGGTGTTTACGATGGCCATGGCTGCTCTCATGTGGCGATGAGGTGCAAGGAGCGGCTGCATGAACTGGTAAAAGATGAGTTGGATAGAGAAGAGAAGGAAGACGCCGCTGCTGCGGCAGAGGCGGAGGCGTCGCGGTGGGACCGTGCTATGAAGAGAATCTTCTGGCGAATGGACAACGAAGTTGTGGCGCGAAACAATGAAGAAGTTGTGGTTGCGAACTGTAGATGCGAGCTTCAGTCGCCGGATTGTGATGCCGTCGGATCTACCGCCGTCGTCGCAATTGTGACGCCGGATAAGATCATCGTCGCCAACTGCGGCGATTCCAGAGCCGTTCTCTGCCGCAACGGAAAGGCCATCCCTCTCTCCTCCGATCATAAGCCGGATCGTCCCGACGAACTTAGCCGAATCGAGGAAGCCGGCGGGCGAGTGATTTATTGGGACGGACCTCGAGTTCTCGGAGTTCTCGCCATGTCAAGAGCCATAGGCGATAATTATTTAAAACCGTATGTGATATCGGAGCCGGAGGTGACAATGACGAAACGGACGGCGGAGGATGAGTGCTTGATTCTAGCGAGCGACGGGCTGTGGGATGTGGTACCGAACGAGACGGCGTGTGGAGTGGCGAGCATGTGCCTTAGGGGGAAGACGGAGGAGAGGTCTCCGGTGTCACCGTCGGGGGAGGCGGAGACGGCGGCGGAAGGGGAGGAGCGAGGGAGCGCAGACAAGGCCTGCAACGATGCGTCGATGCTGCTGACGAAGCTGGCGTTGGCCAGGCACAGTACGGACAACGTGAGCGTCGTGGTGGTGGACCTTAAGAGGGACACGTACCCTTAG 1578 55.39 MRVKKEVSLLSRCSKLIGPRFHHLPKLILRVSSSDQPTPSQSTAQIFPFTTSRTLLPLRSARLSPGSYPCRRRRRRRRLISKIEVINCGWGRGEGILKNLVMAEICCKVMSESEASSSCEPSSRVARRRRMEIRRCKFVAGVAPSETETVAKRQKLEDRATSISRDCDNAVQNCDSVEEETVGRFVAGEVSTKEVSTPLSRESPSGEVIPKFGFSSVCGRRRDMEDAVAVHPSLCLTDKKATDMLHFFGVYDGHGCSHVAMRCKERLHELVKDELDREEKEDAAAAAEAEASRWDRAMKRIFWRMDNEVVARNNEEVVVANCRCELQSPDCDAVGSTAVVAIVTPDKIIVANCGDSRAVLCRNGKAIPLSSDHKPDRPDELSRIEEAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTMTKRTAEDECLILASDGLWDVVPNETACGVASMCLRGKTEERSPVSPSGEAETAAEGEERGSADKACNDASMLLTKLALARHSTDNVSVVVVDLKRDTYP 525
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1162557 1164605 + CePI673135_03g001170.1 Cec03g0117 197741
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0117 525 Coils Coil 261 297 - -
Cec03g0117 525 SUPERFAMILY PP2C-like 204 520 IPR036457 -
Cec03g0117 525 ProSiteProfiles PPM-type phosphatase domain profile. 211 519 IPR001932 -
Cec03g0117 525 PANTHER PROTEIN PHOSPHATASE 173 518 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0005634(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cec03g0117 525 CDD PP2Cc 211 519 IPR001932 -
Cec03g0117 525 Gene3D - 201 523 IPR036457 -
Cec03g0117 525 ProSitePatterns PPM-type phosphatase domain signature. 247 255 IPR000222 GO:0043169(InterPro)
Cec03g0117 525 Coils Coil 153 173 - -
Cec03g0117 525 SMART PP2C_4 201 517 IPR001932 -
Cec03g0117 525 MobiDBLite consensus disorder prediction 464 490 - -
Cec03g0117 525 FunFam Protein phosphatase 2C 50 209 523 - -
Cec03g0117 525 Pfam Protein phosphatase 2C 212 468 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0117 Cec-Chr3:1162557 Cec11g0692 Cec-Chr11:7654017 1.50E-88 dispersed
Cec03g0117 Cec-Chr3:1162557 Cec09g0479 Cec-Chr9:4063707 7.70E-24 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0117 K14497 - csv:101206871 699.893