Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0127 ATGGGAGAGGAGGTGAAGATGGCCGAATATGAGAGCGGTGGTGGCGGTGACGATGAAAACTGTGCTCATGAGGAGCGAGTAGTTGAATGGGAAACGGGTTTGCCTGACGCCGACGATCTCACTCCTCTGTCTCAGACTTTGATTCCGCCGGAGCTTGCATCAGCATTCAGTATATCGACAGGGCCATGTCGGACACTGATGGATGTTAATCGAGCATCGCAGAATACGCTATCGAATCTTCGTGGATTTCAAGCACAAGCGTTTTCGTCAAATAATTTCAAGTCGTTTAATGATGATCGGAGTCGGGATCATGATCCAATGGTGGTTGAAGGAGATGAGGCAACGGAGAGGGATGCAGGGTCTGATTCTAGGAAATTGAGAAAGGTTGATTGTACGGAGGAGGCTGATTCGGCTCTTCGGACGGATAATTCAATGGATGATCCATCGGCTCGGACTTTGAAGAGACCGAGGCTTGTATGGACGCCGCAATTACACAAGCGGTTTGTGGATGTTGTTGCTCATCTTGGAATTAAGAACGCGGTTCCTAAAACTATTATGCAGTTAATGAATGTGGAGGGATTGACTCGGGAGAATGTTGCGAGTCATCTTCAGAAGTATAGGCTTTACTTGAAGAGGATGCAGGGATCTTCCAACGAAGGCCCGTCGTCGCCGGACCGGATTTTTGCGTCCACGCCTGTACCGCAGACCTTGCACGAGTCTACCAACAGTGGGCATGCCAATGGAAATGGGCATTTGCCAGTTCCAACTCCGATGCCGTATGGACCGCCACTGATGCCTATGCCGGTGCTTGGCATGGCAGCGTCTGGTCATGCACACAGTTATATGGGTATGCCGGTCGCTCATCCAGGAAGCGCACAGGGATACCCTGGCTTTGAAACGCATCCTTTCAACATGATGCATCAGAGAGATTGGTCGGGGAACAAATACGGCTCGATCGTGCCTTACCCTCATCCTCATGTACCTCCTAGTACTAATGATAAGTGA 1005 50.15 MGEEVKMAEYESGGGGDDENCAHEERVVEWETGLPDADDLTPLSQTLIPPELASAFSISTGPCRTLMDVNRASQNTLSNLRGFQAQAFSSNNFKSFNDDRSRDHDPMVVEGDEATERDAGSDSRKLRKVDCTEEADSALRTDNSMDDPSARTLKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGSSNEGPSSPDRIFASTPVPQTLHESTNSGHANGNGHLPVPTPMPYGPPLMPMPVLGMAASGHAHSYMGMPVAHPGSAQGYPGFETHPFNMMHQRDWSGNKYGSIVPYPHPHVPPSTNDK 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1227256 1228260 - CePI673135_03g001270.1 Cec03g0127 197751
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0127 334 NCBIfam myb-like DNA-binding domain, SHAQKYF class 156 208 IPR006447 GO:0003677(InterPro)
Cec03g0127 334 MobiDBLite consensus disorder prediction 1 20 - -
Cec03g0127 334 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 160 211 IPR017930 -
Cec03g0127 334 MobiDBLite consensus disorder prediction 93 150 - -
Cec03g0127 334 MobiDBLite consensus disorder prediction 96 150 - -
Cec03g0127 334 Pfam Myb-like DNA-binding domain 158 207 IPR001005 -
Cec03g0127 334 SUPERFAMILY Homeodomain-like 152 212 IPR009057 -
Cec03g0127 334 Gene3D - 152 214 - -
Cec03g0127 334 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 20 288 IPR044841 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)
Cec03g0127 334 FunFam Two-component response regulator 151 214 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0127 Cec-Chr3:1227256 Cec05g1819 Cec-Chr5:30140620 6.60E-21 dispersed
Cec04g0650 Cec-Chr4:25390308 Cec03g0127 Cec-Chr3:1227256 4.50E-37 transposed
Cec10g1667 Cec-Chr10:31143451 Cec03g0127 Cec-Chr3:1227256 9.50E-37 transposed
Cec02g2102 Cec-Chr2:38606760 Cec03g0127 Cec-Chr3:1227256 2.00E-69 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29164 PF00249 Myb_DNA-binding 1.40E-08 CL0123 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0127 - - - 0.0