Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0134 ATGGATAATCTCCTTGAAGATTTTCCCAATTCCTGGAATAATTATCACTTCTATCCCCATCTCTCTAATGGCTTGTTCAAAGTCAATCGCGAATCCGTTGATCCCCTTCAAATTCCGGCCAAATCCCAGCAGCATCAGCACCAACTCAGTAATAATTCCTCTTCTTCGCCGTCGTCGTCGAGCTCCGAAGGTGACTCGCCTGACAGCCATGACACTTCCAATACGATGCTCAAATACATCACCGAGATGCTGATGGATGAAGGAGAAGATCTCAAAACACAGCCCTGTATGCTTCTTGACTGTTTGGCTCTTCAAGCTGCTGAGAAATCTTTTTATGATGTTCTTGGCCAGAAGTATCCCCCTTCTCCAATCGGAAATGGCGATTCTTCTCAGGATTTCAGCTGTGATAGGGCTGTGAGTAATAACGGTGAAGATGAATCGGAATCCTTATATGGTAACTCCTCTGTTTTTGCCCCTTTTCAAAACTCTCTTTTGAATCAAGATTCGTTTCTTGGGATGCAATTTATTGGGCATTTTAGGCAAGGAGCTGAAGAGGCTAGCAAGTTTCTTCCTGTTAATGGAAGATTTGGAACCATTGACTTGGATAATGATTCTTCTACCTCTCTTCCCTCTAGGGCTGTTGATTTTTCTTGGGTTGGTGCTGAAAATGATGGTAGATCCAGCCTTGAAAATGGGTTATTAAGAGAGAAGAAAAACCGTCTTAGGGACGATAGTGATGAGGAGTTGAGAAGTAGTAAACAATCTGCTAACTTTGCCGATGATAATTCACTGTCTGATTTGTTTGATGAGGTTCTTCTTTGTCGGGGTGAGAGTCGGCAGTCCCCATCGTGTGGTTCCGATGAATCGTCGGAGAGTGAAGCAAATAAGAAGTCGAGAGGGAGAGGGAAAAGGAAAGGGAAGAAGACCACTCGTTCTAGGAAGCAAGAGAATAGTGTGGGAGTTGTGGATTTGTGGACATTGTTGACTCAATGTGCTCAGGCTGTTTCAAATTATGATCAAAGGACTGCAAATGAGTTGCTAAATCAGATTAGGCAGCATTCTAATCCATCTGGGGATGGAAATCAGAGATTAGCTCATTACTTTGCCAAGGGTCTCGAGACTCGGCTCGCTGCCGGGACGCCTCTGTATTTGCCCTTTGCAAGTAATGAAACCTCTGCTGCTGAGATCTTGAAAGCTTATCAGATGTTCATCAAGGCTTGCCCGTTTCGGCGGATGTCGTATTTCTATGCCAATAGAACGATTCTGAAGCTAGCCGAGAAAGTAACAACTTTGCATATTGTTGATTTTGGTATTTTGTATGGTCTCCAATGGCCTTGCTTGATTCAACGGCTCTCGCGTAGACCTGGTGGACCTCCCAAACTTCGGATCACGGGGATTGAGCTTCCCCAGCCGGGATTCCGACCTGCTGAACGTGTTGAGCAGACTGGCCGTCGCCTTGCACATTACTGCAAGAGATTCAATGTGCCATTTGAACACAAGGTCTTGGCACAGAAATGGGAAACGGTTCGATATGAGGATCTCAATCTTGATAGAGATGAACTGACTATTGTGACTTGTATGTTTCGAATGAAGAACGTACCCGACGAAACGGTGGTCGCAAACAGCCCAAGAGACAGGGTTCTAAAGTTAATCAGGAAAATCAACCCAGATCTCTTCATTCATGAAGTCACCAATGGCTCATTCAATACTCCATTCTTCAACACAAGGTTTAAGGAAGCACTCTTTTACTACTCATCGTTATTCGACATGTACGAGGCAACTGTACCTCGAGACAATCCGCAGAGGCATCTTTGTGAGAAGGAAATCCTAGGAAGAGACATCATGAATGTCATAGCGTGCGAGGGGCTCGAGAGAGTCGAAAGGCCAGAGACTTACAAGCAATGGCAAGTAAGGAACACGAGGGCTGGGTTCAAACAAGTACCATTAGACCAAGATCTGCTGAAGAGTGTGGAGAAGATAGTGAACACAGAATACCATCAGGACTTCGTGATCGATCAGGATGGGTCGTGGATGTTGCAAGGGTGGAAGGGACGGATCATCGACGCGTTATCGTGCTGGGTAGTTGCCTAA 2091 45.29 MDNLLEDFPNSWNNYHFYPHLSNGLFKVNRESVDPLQIPAKSQQHQHQLSNNSSSSPSSSSSEGDSPDSHDTSNTMLKYITEMLMDEGEDLKTQPCMLLDCLALQAAEKSFYDVLGQKYPPSPIGNGDSSQDFSCDRAVSNNGEDESESLYGNSSVFAPFQNSLLNQDSFLGMQFIGHFRQGAEEASKFLPVNGRFGTIDLDNDSSTSLPSRAVDFSWVGAENDGRSSLENGLLREKKNRLRDDSDEELRSSKQSANFADDNSLSDLFDEVLLCRGESRQSPSCGSDESSESEANKKSRGRGKRKGKKTTRSRKQENSVGVVDLWTLLTQCAQAVSNYDQRTANELLNQIRQHSNPSGDGNQRLAHYFAKGLETRLAAGTPLYLPFASNETSAAEILKAYQMFIKACPFRRMSYFYANRTILKLAEKVTTLHIVDFGILYGLQWPCLIQRLSRRPGGPPKLRITGIELPQPGFRPAERVEQTGRRLAHYCKRFNVPFEHKVLAQKWETVRYEDLNLDRDELTIVTCMFRMKNVPDETVVANSPRDRVLKLIRKINPDLFIHEVTNGSFNTPFFNTRFKEALFYYSSLFDMYEATVPRDNPQRHLCEKEILGRDIMNVIACEGLERVERPETYKQWQVRNTRAGFKQVPLDQDLLKSVEKIVNTEYHQDFVIDQDGSWMLQGWKGRIIDALSCWVVA 696
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1305707 1307797 - CePI673135_03g001340.1 Cec03g0134 197758

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0134 696 MobiDBLite consensus disorder prediction 123 150 - -
Cec03g0134 696 MobiDBLite consensus disorder prediction 278 315 - -
Cec03g0134 696 Pfam GRAS domain family 326 693 IPR005202 -
Cec03g0134 696 MobiDBLite consensus disorder prediction 39 73 - -
Cec03g0134 696 MobiDBLite consensus disorder prediction 122 150 - -
Cec03g0134 696 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 298 693 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Cec03g0134 696 ProSiteProfiles GRAS family profile. 315 694 IPR005202 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0134 K27753 - - csv:101217374 1227.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0134 Cec-Chr3:1305707 Cec05g1316 Cec-Chr5:13433811 2.00E-43 dispersed
Cec02g0168 Cec-Chr2:1648511 Cec03g0134 Cec-Chr3:1305707 8.30E-32 transposed
Cec04g1435 Cec-Chr4:33961740 Cec03g0134 Cec-Chr3:1305707 8.10E-33 transposed
Cec04g1847 Cec-Chr4:37109263 Cec03g0134 Cec-Chr3:1305707 2.40E-52 transposed
Cec05g2301 Cec-Chr5:34292711 Cec03g0134 Cec-Chr3:1305707 2.60E-42 transposed
Cec06g1212 Cec-Chr6:24818758 Cec03g0134 Cec-Chr3:1305707 2.30E-44 transposed
Cec09g0094 Cec-Chr9:802652 Cec03g0134 Cec-Chr3:1305707 2.10E-16 transposed
Cec09g0966 Cec-Chr9:9239198 Cec03g0134 Cec-Chr3:1305707 1.40E-55 transposed
Cec10g0453 Cec-Chr10:5397401 Cec03g0134 Cec-Chr3:1305707 1.10E-57 transposed
Cec10g2124 Cec-Chr10:35838549 Cec03g0134 Cec-Chr3:1305707 7.10E-151 wgd
Cec02g2110 Cec-Chr2:38678140 Cec03g0134 Cec-Chr3:1305707 3.30E-148 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g471 . . . . Bpe01g00125 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone1ag0630 Cone5ag1134 Cone4ag1048 . . Csa06g01475 Chy11g01219 . . . . . Bpe08g00098 . Bma07g00096 . . Cmo02g00793 Cmo20g00427 Cma02g00793 Cma20g00394 Car02g00572 Car20g00340 . . . . . . . . . Cla03g00132 Cam03g0134 Cec03g0134 Cco03g0141 Clacu03g0137 Cmu03g0756 Cre03g0450 . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cec10g2124 . 74 744 GRAS Transcription Factor Family AT2G37650 54.4 2.8e-194 675.6
Cec03g0134 . 314 696 GRAS Transcription Factor Family AT3G46600 56.9 3.9e-127 452.2
Cec04g1435 . 50 468 GRAS Transcription Factor Family AT3G49950 60.0 3.8e-135 478.4
Cec07g1187 . 21 445 GRAS Transcription Factor Family AT5G41920 64.9 3.8e-148 521.5
Cec04g0727 . 450 842 GRAS Transcription Factor Family AT5G41920 55.5 2.5e-115 412.5
Cec07g1011 . 1 608 GRAS Transcription Factor Family AT5G66770 56.9 1.9e-172 602.8
Cec04g1642 . 1 569 GRAS Transcription Factor Family AT5G66770 54.4 2.6e-150 529.3
Cec10g0453 . 45 544 GRAS Transcription Factor Family AT1G50600 58.3 1.8e-161 566.2
Cec02g0972 . 57 529 GRAS Transcription Factor Family AT1G50600 57.9 9.1e-150 527.3
Cec04g1847 . 111 548 GRAS Transcription Factor Family AT1G50600 56.9 8.2e-143 504.2
Cec10g0383 . 1 636 GRAS Transcription Factor Family AT1G63100 50.2 8.9e-163 570.9
Cec01g0636 . 44 580 GRAS Transcription Factor Family AT1G14920 67.3 1.7e-204 709.1
Cec03g0851 . 47 598 GRAS Transcription Factor Family AT1G14920 61.1 2.6e-184 642.1
Cec05g1316 . 31 554 GRAS Transcription Factor Family AT1G14920 56.1 2.9e-156 548.9
Cec10g0366 . 34 400 GRAS Transcription Factor Family AT1G55580 51.2 7.0e-103 371.3
Cec03g0851 . 47 595 GRAS Transcription Factor Family AT1G66350 60.3 3.8e-177 618.2
Cec01g0636 . 1 578 GRAS Transcription Factor Family AT1G66350 56.5 2.2e-172 602.4
Cec05g1316 . 1 553 GRAS Transcription Factor Family AT1G66350 55.7 9.4e-160 560.5
Cec02g2110 . 252 772 GRAS Transcription Factor Family AT1G07520 50.5 1.0e-140 497.3
Cec02g0972 . 19 529 GRAS Transcription Factor Family AT5G48150 63.1 4.7e-177 617.8
Cec10g0453 . 17 544 GRAS Transcription Factor Family AT5G48150 58.9 1.6e-172 602.8
Cec04g1847 . 16 548 GRAS Transcription Factor Family AT5G48150 51.8 4.5e-151 531.6
Cec01g0636 . 46 577 GRAS Transcription Factor Family AT2G01570 68.1 2.3e-210 728.8
Cec03g0851 . 48 596 GRAS Transcription Factor Family AT2G01570 62.2 5.5e-188 654.4
Cec05g1316 . 30 554 GRAS Transcription Factor Family AT2G01570 57.8 4.4e-161 565.1
Cec03g0851 . 47 595 GRAS Transcription Factor Family AT1G66350 60.3 3.8e-177 618.2
Cec01g0636 . 1 578 GRAS Transcription Factor Family AT1G66350 56.5 2.2e-172 602.4
Cec05g1316 . 1 553 GRAS Transcription Factor Family AT1G66350 55.7 9.4e-160 560.5
Cec03g0851 . 48 596 GRAS Transcription Factor Family AT3G03450 62.6 1.3e-178 623.2
Cec01g0636 . 10 577 GRAS Transcription Factor Family AT3G03450 58.1 7.4e-171 597.4
Cec05g1316 . 30 554 GRAS Transcription Factor Family AT3G03450 58.1 1.1e-158 557.0
Cec03g0851 . 47 598 GRAS Transcription Factor Family AT5G17490 56.3 1.4e-158 556.6
Cec01g0636 . 42 580 GRAS Transcription Factor Family AT5G17490 57.1 6.4e-156 547.7
Cec05g1316 . 27 554 GRAS Transcription Factor Family AT5G17490 52.7 1.0e-137 487.3
Cec09g0966 . 1 570 GRAS Transcription Factor Family AT1G21450 57.2 1.7e-173 606.3
Cec10g0453 . 168 544 GRAS Transcription Factor Family AT1G21450 52.4 1.1e-114 411.0
Cec03g0134 . 322 696 GRAS Transcription Factor Family AT5G59450 57.0 6.0e-129 458.4
Cec10g2124 . 369 741 GRAS Transcription Factor Family AT5G59450 54.3 4.9e-115 412.1
Cec04g1847 . 1 548 GRAS Transcription Factor Family AT4G17230 58.5 8.7e-177 617.1
Cec02g0972 . 1 529 GRAS Transcription Factor Family AT4G17230 50.2 8.8e-137 484.2
Cec10g0453 . 60 544 GRAS Transcription Factor Family AT4G17230 52.0 5.4e-134 474.9
Cec02g0972 . 134 529 GRAS Transcription Factor Family AT2G04890 64.5 7.4e-147 517.3
Cec10g0453 . 166 544 GRAS Transcription Factor Family AT2G04890 62.3 5.5e-142 501.1
Cec04g1847 . 169 548 GRAS Transcription Factor Family AT2G04890 58.2 2.7e-125 445.7
Cec03g1344 . 1 471 GRAS Transcription Factor Family AT1G50420 66.5 1.0e-176 616.7
Cec05g2301 . 26 487 GRAS Transcription Factor Family AT1G50420 60.9 2.0e-156 549.3
Cec06g0313 . 379 744 GRAS Transcription Factor Family AT4G00150 60.2 5.0e-122 435.3
Cec10g0274 . 497 860 GRAS Transcription Factor Family AT4G00150 55.4 1.0e-103 374.4
Cec07g1011 . 1 608 GRAS Transcription Factor Family AT3G50650 52.0 6.0e-149 524.6
Cec04g0727 . 240 840 GRAS Transcription Factor Family AT3G54220 64.1 3.6e-204 708.4
Cec07g1187 . 75 443 GRAS Transcription Factor Family AT3G54220 63.7 2.3e-134 476.5
Cec04g1447 . 93 493 GRAS Transcription Factor Family AT4G37650 66.8 1.8e-158 556.2
Cec02g1327 . 106 496 GRAS Transcription Factor Family AT4G37650 56.4 1.9e-123 439.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004971 1 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 3 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29165 PF03514 GRAS 4.20E-115 CL0063 Cec TF