Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0141 ATGGCTAAAACCGCTATTCTCCTCTGCATTGCGACTATCATTTCAACAATGTGGACGGCCGGCGCCAGAATTCCCGGCGTCTACTCCGGCGGCCCATGGGAGAGTGCCCATGCCACGTTCTACGGCGGCTCCGATGCCTCCGGCACAATGGGTGGAGCTTGTGGGTATGGGAACTTGTACAGCCAAGGGTACGGAGTGAACACGGCGGCGTTGAGTACGGCGCTGTTTAACAATGGGCTGAGCTGCGGCGCCTGTTTCGAAATCAAATGTGCAAATGACCCGAGATGGTGCCATTCCGGCAGCCCGTCGATTATTATTACGGCCACTAATTTCTGTCCACCGAACTTTGCTTTGCCCAGTGACAATGGCGGATGGTGTAATCCTCCTCGCCCACATTTCGATTTGGCTATGCCTATGTTTCTTAAGATAGCTGAGTATCGCGCCGGAATCGTCCCCGTCGCCTACCGCCGGGTGGCATGCCGAAAGCAAGGGGGGATCCGGTTCACAATCCACGGGTTCAGATACTTCAACTTGGTGTTAATCACCAACGTCGCGGGTGCAGGGGATATCGTGAAGGTGAGCGTGAAAGGCACGCGCACCGGTTGGATGAGCATGAGCCGTAACTGGGGTCAAAACTGGCAGTCAAACGCCGTGTTGGTGGGCCAGGCCTTGTCTTTTAGAGTCACAGGCAGTGACAGACGGACTTCCACCTCCTTCAACGTGGCGCCTTCTGATTGGCAGTTCGGTCAGACCTTCACCGGCAAGAATTTTAGGGTTTGA 780 55.38 MAKTAILLCIATIISTMWTAGARIPGVYSGGPWESAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGACFEIKCANDPRWCHSGSPSIIITATNFCPPNFALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVAYRRVACRKQGGIRFTIHGFRYFNLVLITNVAGAGDIVKVSVKGTRTGWMSMSRNWGQNWQSNAVLVGQALSFRVTGSDRRTSTSFNVAPSDWQFGQTFTGKNFRV 259
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1400137 1401908 + CePI673135_03g001410.1 Cec03g0141 197765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0141 259 FunFam Expansin 22 161 - -
Cec03g0141 259 CDD DPBB_EXPA_N 32 160 - -
Cec03g0141 259 Gene3D - 21 161 IPR036908 -
Cec03g0141 259 SMART dpbb_1 68 155 IPR007112 -
Cec03g0141 259 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 175 254 IPR007117 -
Cec03g0141 259 PANTHER EXPANSIN-A15 10 257 IPR002963 GO:0009664(InterPro)
Cec03g0141 259 FunFam Expansin 165 257 - -
Cec03g0141 259 Pfam Lytic transglycolase 68 155 IPR009009 -
Cec03g0141 259 SUPERFAMILY Barwin-like endoglucanases 32 183 IPR036908 -
Cec03g0141 259 SUPERFAMILY PHL pollen allergen 162 254 IPR036749 -
Cec03g0141 259 Pfam Expansin C-terminal domain 166 243 IPR007117 -
Cec03g0141 259 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 165 IPR007112 -
Cec03g0141 259 Gene3D - 165 257 IPR036749 -
Cec03g0141 259 PRINTS Expansin signature 140 153 IPR002963 GO:0009664(InterPro)
Cec03g0141 259 PRINTS Expansin signature 164 176 IPR002963 GO:0009664(InterPro)
Cec03g0141 259 PRINTS Expansin signature 90 101 IPR002963 GO:0009664(InterPro)
Cec03g0141 259 PRINTS Expansin signature 104 114 IPR002963 GO:0009664(InterPro)
Cec03g0141 259 PRINTS Expansin signature 123 140 IPR002963 GO:0009664(InterPro)
Cec03g0141 259 PRINTS Expansin signature 176 197 IPR002963 GO:0009664(InterPro)
Cec03g0141 259 PRINTS Expansin signature 211 232 IPR002963 GO:0009664(InterPro)
Cec03g0141 259 PRINTS Expansin signature 63 77 IPR002963 GO:0009664(InterPro)
Cec03g0141 259 PRINTS Expansin signature 240 256 IPR002963 GO:0009664(InterPro)
Cec03g0141 259 PRINTS Expansin/Lol pI family signature 202 216 IPR007118 GO:0005576(InterPro)
Cec03g0141 259 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576(InterPro)
Cec03g0141 259 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576(InterPro)
Cec03g0141 259 PRINTS Expansin/Lol pI family signature 240 254 IPR007118 GO:0005576(InterPro)
Cec03g0141 259 PRINTS Expansin/Lol pI family signature 148 164 IPR007118 GO:0005576(InterPro)
Cec03g0141 259 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0141 Cec-Chr3:1400137 Cec09g2072 Cec-Chr9:37762880 7.40E-121 dispersed
Cec01g0866 Cec-Chr1:9890651 Cec03g0141 Cec-Chr3:1400137 2.90E-75 transposed
Cec02g2116 Cec-Chr2:38725318 Cec03g0141 Cec-Chr3:1400137 1.90E-137 wgd
Cec03g0141 Cec-Chr3:1400137 Cec04g0951 Cec-Chr4:29183375 1.50E-134 wgd
Cec03g0141 Cec-Chr3:1400137 Cec07g0374 Cec-Chr7:3761518 5.30E-135 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0141 - - - 0.0