Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0157 ATGGAGGAAGATAACGGCGCTCTTATTCAGAGTCTGATCGATGTAGTGAATGAGATTGCTTGGATCTCGGATTTTAGGTATACTGTTAAGAAGCAGTATTGTAATTTGTCCAGGAGATTGAAGCTTCTGATCCCAATGTTCGAAGAGATTAGAGACAGTAAAGAGCCTGTTTCTGAGGATACTCTTAACGCTCTCGTATTGTTGAAAGAAGCTCTCGAATCGGCTAAGAAGTTGCTCAGATTTGGAAGCGAAGGGAGCAAGATTTTCCTGGCCGTAGAGAGGGAGCAAATTATGAACAAATTTCACGAGGTAACTGCTCGGTTGGAACAAGCGTTGGAAGGAATAGCCTATGATAAACTTGATATATCCGATGAAGTTAAAGAGCAGGTTGAGCTTGTTCTTGCTCAGTTCAGAAGGGCCAAAGGCAGGGCGGATGCTCCTGACTCTGAGCTGTTGGATGATATCCTTGCCCTTTACAACACGAGCAATGATTCTTCTATAGATCAAGACCGCCTAAGGAGACTGTCCGAAAAATTACAGTTAGTTGGAATATCCGATCTGACACAAGAGTCAATAGCTTTGCATGAGATGGTTTCTGCTACTGATGGGGATCCAGGCGAGAGCATTGAGAAGATGGCAGGGCTGCTAAAGAAAATAAAAGATTTCGTGCAAACAGAGAACCTCCAAACGGACACTCCTAGTAGAGAAAAGAGTCCTCCAGCAAGTTGTAGTGGACAAGTATCCAATGATAAAAATAACAAGGCCCCAATTATACCAGATGATTTTCGCTGCCCCATATCCCTGGAGTTGATGAGAGATCCTGTCATTGTCTCAACTGGACAGACCTATGAACGTTCCTGCATTGAGAAGTGGCTTGAAGCAGGGCATGGGACGTGTCCAAAGACACAACAAAACCTTTCAAGCACTACTCTTACCCCAAATTATGTGTTGCGTAGCCTTATAGCCCAATGGTGCGAGGCTAATGGTATCGAACCACCAAAACGACCCAGCAGTGCTCGACCATGTAGAAGCTCCTCATCTTGCTCACCTGCTGAACGCACAAAGATTGATATTCTTCTTTGCAAACTTGCATCTGGAAATCCTGAAGATCAACGATCTGCAGCTGGTGAGATCCGACTTCTTGCAAAACGGAACGCAGATAATCGCGTTGCTATTGCTGAGGCAGGTGCTATACCTCTCCTTGTCGGCCTTCTTTCAACTCCAGACTCCCGTGTTCAGGAGCATGCTGTAACAGCACTTCTTAACCTTTCTATATGCGAGGACAACAAGGGAAGCATCATTTCCTCTGGGGCGGTTCCTGGTATTGTTCTCGTGCTTAAGAAGGGGAGCATGGAAGCACGGGAAAATGCTGCAGCCACTCTTTTCAGCCTTTCGGTTGTTGATGAAAATAAAGTTAGGATTGGTGCCTCCGGAGCTATCCCGCCGCTTGTAACACTGCTTAGTGAAGGCACGCAAAGGGGTAAGAAAGATGCTGCAACTGCACTTTTCAACTTATGCATCTACCAAGGAAACAAAGGCAAGGCAGTTAGAGCTGGTGTAGTTCCAACCTTAATGCAGCTTCTCACCGAGCCCAGAACCGGAATGGTGGATGAAGCCTTAGCCATCTTAGCAATACTTGCTAGCCATCCCGAAGGGAAAGCTGCCATCGGATCTGCAAAGGCAGTGCCGGTTTTGGTAGATGTTATTGGGACAGGATCCCCCAGGAACAGAGAGAATGCTGCTGCAGTTCTCGTGCACCTCTGCTCGGGAGACGAGCAACACCTAGTAGAGGCCAGGGAACTTGGAGTGATCAGTCCATTGATAGATTTGGCACGCAGTGGCACAGATAGAGGAAAGCGAAAAGCTGCACAGTTGCTTGAACGAATGAACCGACTGTTTGAGCACGCGGCACATCAGGAGGAGCTTCGGCTGCTTCCATTACAATCGTCGGAGTCTCAACCTCAAAGCCAGCCATCACAATCAACATCGACAACGGAAGTCGTTGGTAGCTGA 2013 47.09 MEEDNGALIQSLIDVVNEIAWISDFRYTVKKQYCNLSRRLKLLIPMFEEIRDSKEPVSEDTLNALVLLKEALESAKKLLRFGSEGSKIFLAVEREQIMNKFHEVTARLEQALEGIAYDKLDISDEVKEQVELVLAQFRRAKGRADAPDSELLDDILALYNTSNDSSIDQDRLRRLSEKLQLVGISDLTQESIALHEMVSATDGDPGESIEKMAGLLKKIKDFVQTENLQTDTPSREKSPPASCSGQVSNDKNNKAPIIPDDFRCPISLELMRDPVIVSTGQTYERSCIEKWLEAGHGTCPKTQQNLSSTTLTPNYVLRSLIAQWCEANGIEPPKRPSSARPCRSSSSCSPAERTKIDILLCKLASGNPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRVQEHAVTALLNLSICEDNKGSIISSGAVPGIVLVLKKGSMEARENAAATLFSLSVVDENKVRIGASGAIPPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVVPTLMQLLTEPRTGMVDEALAILAILASHPEGKAAIGSAKAVPVLVDVIGTGSPRNRENAAAVLVHLCSGDEQHLVEARELGVISPLIDLARSGTDRGKRKAAQLLERMNRLFEHAAHQEELRLLPLQSSESQPQSQPSQSTSTTEVVGS 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 1536262 1540637 + CePI673135_03g001570.1 Cec03g0157 197781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0157 670 PANTHER U BOX DOMAIN-CONTAINING 29 630 - -
Cec03g0157 670 MobiDBLite consensus disorder prediction 643 670 - -
Cec03g0157 670 SUPERFAMILY RING/U-box 255 334 - -
Cec03g0157 670 SMART arm_5 385 425 IPR000225 GO:0005515(InterPro)
Cec03g0157 670 SMART arm_5 426 466 IPR000225 GO:0005515(InterPro)
Cec03g0157 670 SMART arm_5 549 589 IPR000225 GO:0005515(InterPro)
Cec03g0157 670 SMART arm_5 591 631 IPR000225 GO:0005515(InterPro)
Cec03g0157 670 SMART arm_5 508 548 IPR000225 GO:0005515(InterPro)
Cec03g0157 670 SMART arm_5 467 507 IPR000225 GO:0005515(InterPro)
Cec03g0157 670 Gene3D - 7 117 IPR036537 GO:0007166(InterPro)
Cec03g0157 670 ProSiteProfiles U-box domain profile. 257 331 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec03g0157 670 Pfam Mixed lineage kinase domain-like N-terminal domain 29 116 IPR054000 -
Cec03g0157 670 CDD MLKL_NTD 10 138 - -
Cec03g0157 670 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 331 IPR013083 -
Cec03g0157 670 SMART Ubox_2 261 324 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec03g0157 670 MobiDBLite consensus disorder prediction 227 253 - -
Cec03g0157 670 FunFam RING-type E3 ubiquitin transferase 341 492 - -
Cec03g0157 670 FunFam RING-type E3 ubiquitin transferase 5 118 - -
Cec03g0157 670 Pfam Armadillo/beta-catenin-like repeat 468 506 IPR000225 GO:0005515(InterPro)
Cec03g0157 670 Pfam Armadillo/beta-catenin-like repeat 385 424 IPR000225 GO:0005515(InterPro)
Cec03g0157 670 Pfam Armadillo/beta-catenin-like repeat 550 589 IPR000225 GO:0005515(InterPro)
Cec03g0157 670 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 519 561 IPR000225 GO:0005515(InterPro)
Cec03g0157 670 FunFam RING-type E3 ubiquitin transferase 258 331 - -
Cec03g0157 670 Gene3D - 552 646 IPR011989 -
Cec03g0157 670 FunFam RING-type E3 ubiquitin transferase 532 646 - -
Cec03g0157 670 Pfam U-box domain 258 328 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cec03g0157 670 MobiDBLite consensus disorder prediction 645 670 - -
Cec03g0157 670 SUPERFAMILY ARM repeat 356 629 IPR016024 -
Cec03g0157 670 MobiDBLite consensus disorder prediction 227 256 - -
Cec03g0157 670 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 396 438 IPR000225 GO:0005515(InterPro)
Cec03g0157 670 CDD RING-Ubox_PUB 259 311 IPR045210 -
Cec03g0157 670 Gene3D - 347 551 IPR011989 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g1494 Cec-Chr1:29572323 Cec03g0157 Cec-Chr3:1536262 1.30E-10 dispersed
Cec02g1026 Cec-Chr2:16599482 Cec03g0157 Cec-Chr3:1536262 1.30E-81 dispersed
Cec03g0157 Cec-Chr3:1536262 Cec05g2340 Cec-Chr5:34660502 6.40E-116 dispersed
Cec06g0956 Cec-Chr6:13336091 Cec03g0157 Cec-Chr3:1536262 3.10E-16 transposed
Cec08g1778 Cec-Chr8:28885638 Cec03g0157 Cec-Chr3:1536262 3.80E-35 transposed
Cec11g1438 Cec-Chr11:28553272 Cec03g0157 Cec-Chr3:1536262 4.40E-36 transposed
Cec02g2133 Cec-Chr2:38871217 Cec03g0157 Cec-Chr3:1536262 8.60E-166 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0157 K27628 - csv:101218572 1132.09