Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0208 ATGAACACCCTTCCGGCGAAAATGGTTGAGAGTCTCTCTTTAATCAGAACCTTTGCGACTTTTCCCTCTTCTCACCGAGGTTCTCCCAATTATGGGCTAGTTTCGTTCTTCCAACAAAATAGAGGATCAAGGTTGAGTTTTCCTAAAACGACATGGAGCTTGGAAAAATGTAGTATGCGCGTCGAGAATTGTTTGCAAGCACTTCGTCCTGCCTCTGAAGCTTTTGCTCAAGAGGCTACAGATGCTCTTAAAGCTGGGAAGGTTATTGCTGTCCCTACTGATACTCTCTATGGACTCGCTTGTGATGCTTGTTCTTCTGAAGCAGTCCATAGGATTTATGAAATTAAAGGACGTAAACTTACAAGTCCTCTCGCCATTTGTGTTGGTGATGTCTCTGACATAACTCGTTTTGCTGTGACAGACCATTTGCCTTCTGGTTTGCTTGATTCTCTCCTTCCTGGGCCTGTAACTGTTGTACTAAAAAGAGGTGAGGCGAGTATTCTTGAGAAGTCTTTGAACCCTGGATTGGACAGTATAGGAGTTCGTGTACCCGATGCTGACTTTATTAGACTGATTTCTCGTAGATCAGAGACAGCATTGGCCCTTACAAGTGCTAATTTAAGTGGACAACCAAGCAGTGTTTGCGTTAATGACTTTGAAAACCTATGGCAACACTGTGCTTATGTATACGACGGTGGCGTTCTTCCTGCTGGACGAGCAGGCTCGACTATCATTGACCTCACCAAGCGTGGCACATATAAGATTCTCAGAGCTGGAAGTGCAAAGGAGCAGACTGTTGCAACACTTGAAAGACCCAACAACAAGAATATGGAGAATGATTCTTCTGCTATGGAAATCAAAGGCCTTCCCACTTACGACGGCAAATACTTACTCTACAATGTTCTCGGCAACTTCTTCGAGGTCTCTGCCAAGTACTCCCCTTCAATTCAACCTGTTGGACGCGGTGCTTACGGCATTGTTTGTTGTACGACCAATTCTGAGACGAAAGAAGAGGTAGCGATTAAGAAGATTGGGAATGCTTTTGATAATAGGATTGATGCCAAGAGGACCCTTCGTGAGATTAAACTCCTTTGCCATATGGATCATGACAATATTATAAAAATCAAAGATATAATTCCTCCACCAGAGAAGGAGAAATTCAATGATGTGTATATTGTGTATGAATTAATGGACACTGACCTGCACCAGATCATACGCTCTACCCAGGCTCTGACAGACGATCACTGTCAGTACTTCTTATACCAATTACTGCGAGGTTTGAAGTATTTACACTCTGCAAATGTCTTGCACCGAGATCTAAAACCAAGCAACTTGCTTCTTAATGCAAATTGTGACCTCAAGATTTGTGATTTTGGGTTAGCAAGAACAACATCAGAGACAGATTTCATGACAGAATATGTTGTAACACGATGGTATCGAGCCCCTGAGCTACTACTCAACACTTCTGAATACACAGCAGCAATAGATATTTGGTCGGTTGGATGTATTCTCATGGAAATTCTTAGGAGGGAGCCACTGTTCCCTGGTAAAGACTATGTGCAGCAATTGGGGCTTATAACTGTGTTGCTAGGTTCACCAGATGACTCAGATCTTGGGTTTCTTAGAAGTGATAATGCAAGGAAGTATGTTAAGCAACTTCCTTATTTCCCGAAACAACCGCTAACCGAAAAGTTCCCAGATCTTCCTCCACTAGCAGTTGATCTTGCAGAGAGGATGCTGCTCTTTGATCCAAGCAAGAGAATAACTGTCGAGGAGGCGATGATTCACCCATATATAGTAAGTCTTCATGAAATCAATGAAGAACCAACCTGCCCTTCTCCTTTCAACTTCGATTTCGAACAAGCATCCTTGGATGAAGAAGACATAAAAGAGCTTATATGGAGGGAGTCTCTCAATTTCAATCCAAATCACATTTAG 1938 42.67 MNTLPAKMVESLSLIRTFATFPSSHRGSPNYGLVSFFQQNRGSRLSFPKTTWSLEKCSMRVENCLQALRPASEAFAQEATDALKAGKVIAVPTDTLYGLACDACSSEAVHRIYEIKGRKLTSPLAICVGDVSDITRFAVTDHLPSGLLDSLLPGPVTVVLKRGEASILEKSLNPGLDSIGVRVPDADFIRLISRRSETALALTSANLSGQPSSVCVNDFENLWQHCAYVYDGGVLPAGRAGSTIIDLTKRGTYKILRAGSAKEQTVATLERPNNKNMENDSSAMEIKGLPTYDGKYLLYNVLGNFFEVSAKYSPSIQPVGRGAYGIVCCTTNSETKEEVAIKKIGNAFDNRIDAKRTLREIKLLCHMDHDNIIKIKDIIPPPEKEKFNDVYIVYELMDTDLHQIIRSTQALTDDHCQYFLYQLLRGLKYLHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSETDFMTEYVVTRWYRAPELLLNTSEYTAAIDIWSVGCILMEILRREPLFPGKDYVQQLGLITVLLGSPDDSDLGFLRSDNARKYVKQLPYFPKQPLTEKFPDLPPLAVDLAERMLLFDPSKRITVEEAMIHPYIVSLHEINEEPTCPSPFNFDFEQASLDEEDIKELIWRESLNFNPNHI 645
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2185387 2197502 + CePI673135_03g002080.1 Cec03g0208 197832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0208 645 NCBIfam L-threonylcarbamoyladenylate synthase 75 265 IPR006070 GO:0003725(InterPro)
Cec03g0208 645 CDD STKc_TEY_MAPK 306 642 - -
Cec03g0208 645 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 306 636 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cec03g0208 645 Gene3D Phosphorylase Kinase; domain 1 296 636 - -
Cec03g0208 645 ProSitePatterns MAP kinase signature. 348 451 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec03g0208 645 FunFam Mitogen-activated protein kinase 397 626 - -
Cec03g0208 645 FunFam Mitogen-activated protein kinase 298 407 - -
Cec03g0208 645 Gene3D Transferase(Phosphotransferase) domain 1 397 626 - -
Cec03g0208 645 ProSiteProfiles Protein kinase domain profile. 313 599 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec03g0208 645 Pfam Telomere recombination 82 259 IPR006070 GO:0003725(InterPro)
Cec03g0208 645 SUPERFAMILY YrdC/RibB 75 264 IPR017945 -
Cec03g0208 645 SMART serkin_6 313 599 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec03g0208 645 ProSiteProfiles YrdC-like domain profile. 73 261 IPR006070 GO:0003725(InterPro)
Cec03g0208 645 SUPERFAMILY Protein kinase-like (PK-like) 316 605 IPR011009 -
Cec03g0208 645 Gene3D DHBP synthase 66 270 - -
Cec03g0208 645 FunFam YrdC N6-threonylcarbamoyltransferase domain containing 66 269 - -
Cec03g0208 645 ProSitePatterns Serine/Threonine protein kinases active-site signature. 435 447 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec03g0208 645 Pfam Protein kinase domain 317 599 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec03g0208 645 ProSitePatterns Protein kinases ATP-binding region signature. 319 343 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec01g0232 Cec-Chr1:2316600 Cec03g0208 Cec-Chr3:2185387 6.30E-169 dispersed
Cec03g0208 Cec-Chr3:2185387 Cec06g0355 Cec-Chr6:4074134 7.20E-165 dispersed
Cec03g0201 Cec-Chr3:2093094 Cec03g0208 Cec-Chr3:2185387 1.60E-148 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71805 PF00069 Pkinase 9.80E-68 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0208 K04371 - csv:101218403 718.768