Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0227 ATGTCTCCGAAGTCTCTAATGGCGAAGAATAGATTCATTTGCGAGATATGCAACAAGGGATTTCAAAGAGACCAAAACTTGCAGCTTCACCGACGAGGGCACAACTTGCCGTGGAAGCTCCGACAAAGGACGAGCAAGGAAGTGAGGAAGAAGGTGTATGTTTGCCCGGAGAAGAGCTGCGTGCACCACGACCCGGCAAGGGCGCTCGGCGACCTCACCGGGATCAAGAAGCACTATAGTAGGAAGCATGGTGAGAAGAAGTGGAAGTGTGAGAAATGCTCCAAGAAGTATGCAGTTCAATCAGATTGGAAGGCTCATTCTAAGATATGTGGGACAAAGGAATACAAATGTGACTGTGGGACTCTCTTTTCCAGAAAGGATAGCTTCATTACTCACAGAGCATTTTGTGATGCATTAGCTGAAGAAAACTCAAGAATAAATCATCATCATCATCATCATCATCATCCAACCTTCATAAACAACAACTTTTCTCCTACTTCTTCTTCACTACTTCTCCAACCAAACTTCGTCACCGCCACCGTCACTGCCGATCAATCCTCCCTTGCCCACAATTTTCCTAACATTATCTCTGACAACGACTGCGACCACAAGCCCCATGCTCTTCCGCTGTCGTCGCCACTGCAGCTCCCGCTCTGGCTCGACCCTCCTCCCAATACTCCTAACCCCTTTTTCTCTTCGGCCACCGCCATCCACGGCTTCTCCGACCACCCTACATTCTTCTCGGAAAATCACCACCTTTTTTTGTCGGAGCCGCTAACGACGGCCTCCTCGTACCCAGCGGCGCCCCACATGTCCGCCACCGCACTCCTCCAAAATGCCGCTCAAATGGGGCCCACCAGAACCCCAGCCGGGCCGCCGATTCTCTTCAATGCCTCCACCACCGGGGCGGCATATGGAACGAACAACTCAGCCGCTGCTGCCGCGGTCTTATCGGATGGCCGTCCGATGAAGCCATTAATGGGGGGAGCTAAGGATGAAATTGGAGGGCAGAATTTTACCAGAGACTTTCTCGGCGTAGGAAATCAGGTGGTGCATCTCACACCGGTGGGTTCCAAACAATACAGTGATCAGAGCCGCGGCCATTAG 1107 51.67 MSPKSLMAKNRFICEICNKGFQRDQNLQLHRRGHNLPWKLRQRTSKEVRKKVYVCPEKSCVHHDPARALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHSKICGTKEYKCDCGTLFSRKDSFITHRAFCDALAEENSRINHHHHHHHHPTFINNNFSPTSSSLLLQPNFVTATVTADQSSLAHNFPNIISDNDCDHKPHALPLSSPLQLPLWLDPPPNTPNPFFSSATAIHGFSDHPTFFSENHHLFLSEPLTTASSYPAAPHMSATALLQNAAQMGPTRTPAGPPILFNASTTGAAYGTNNSAAAAAVLSDGRPMKPLMGGAKDEIGGQNFTRDFLGVGNQVVHLTPVGSKQYSDQSRGH 368
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2458314 2460297 - CePI673135_03g002270.1 Cec03g0227 197851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0227 368 FunFam protein indeterminate-domain 5, chloroplastic-like 66 145 - -
Cec03g0227 368 Gene3D Classic Zinc Finger 44 137 - -
Cec03g0227 368 ProSitePatterns Zinc finger C2H2 type domain signature. 14 34 IPR013087 -
Cec03g0227 368 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 87 111 - -
Cec03g0227 368 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 114 152 - -
Cec03g0227 368 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 1 352 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cec03g0227 368 ProSiteProfiles Zinc finger C2H2 type domain profile. 12 34 IPR013087 -
Cec03g0227 368 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 49 83 - -
Cec03g0227 368 FunFam Zinc finger protein MAGPIE 8 35 - -
Cec03g0227 368 SMART c2h2final6 88 108 IPR013087 -
Cec03g0227 368 SMART c2h2final6 12 34 IPR013087 -
Cec03g0227 368 SMART c2h2final6 53 83 IPR013087 -
Cec03g0227 368 Gene3D Classic Zinc Finger 8 35 - -
Cec03g0227 368 SUPERFAMILY beta-beta-alpha zinc fingers 11 108 IPR036236 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0227 Cec-Chr3:2458314 Cec08g1569 Cec-Chr8:27281530 3.80E-78 dispersed
Cec03g0227 Cec-Chr3:2458314 Cec04g1633 Cec-Chr4:35643273 2.90E-78 transposed
Cec03g0227 Cec-Chr3:2458314 Cec10g2045 Cec-Chr10:35188726 2.90E-78 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29172 PF12171 zf-C2H2_jaz 5.00E-05 CL0361 Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0227 K25870 - csv:101212420 559.296