Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0239 ATGGAGTCCAGTGAGCCAAAATCCAGCCCAACTTCAACTAACCTCCTTTCTCAGTCGTTGCCGTCGTCTCCTTCACCGCCGCCGAGTGTTCAGGCCGCCGTGGTGGTCAGTCCGTGTGCGGCGTGCAAGATTCTGAGGCGGAGATGCGCAGAGAAATGCGTATTAGCGCCCTATTTTCCTCCCTCTGATCCTCTCAAATTCACCATTGCTCACCGCGTCTTCGGCGCTAGCAACATCATCAAATTGCTTCAGGATCTTCCTGATTCACAAAGGGCTGATGCAGTGAGTAGTTTAGTGTATGAAGCAAGTGCAAGAATTAGAGATCCAGTTTATGGATGTGCAGGGGCCATTTGCCAGCTTCAGAAACAGATAAACGAATTGCAAGCAGAACTAGCCAAGACACAGGCTGAGCTTGTCAATATCCACTGCCACCAAGCCAATTTGGTGGCTCTGATTTGCAAGGAGTTAGCCCAAACGCCGCCACCGATGTCGCCACTGCCGGACCACCGCTCACTTGACAACAATTTCAACATTGCCACACCTCAGAGCTACCAAGGCTACACATCTTTGTTTGAGGATAGCAATATTTGGGACCCTCTTTGGACATGA 609 50.57 MESSEPKSSPTSTNLLSQSLPSSPSPPPSVQAAVVVSPCAACKILRRRCAEKCVLAPYFPPSDPLKFTIAHRVFGASNIIKLLQDLPDSQRADAVSSLVYEASARIRDPVYGCAGAICQLQKQINELQAELAKTQAELVNIHCHQANLVALICKELAQTPPPMSPLPDHRSLDNNFNIATPQSYQGYTSLFEDSNIWDPLWT 202
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 2671772 2672757 + CePI673135_03g002390.1 Cec03g0239 197863
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0239 202 Coils Coil 117 144 - -
Cec03g0239 202 MobiDBLite consensus disorder prediction 1 20 - -
Cec03g0239 202 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 36 158 - -
Cec03g0239 202 ProSiteProfiles LOB domain profile. 37 138 IPR004883 -
Cec03g0239 202 MobiDBLite consensus disorder prediction 1 27 - -
Cec03g0239 202 Pfam Lateral organ boundaries (LOB) domain 38 135 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec02g2200 Cec-Chr2:39452897 Cec03g0239 Cec-Chr3:2671772 3.10E-55 dispersed
Cec03g0239 Cec-Chr3:2671772 Cec07g0514 Cec-Chr7:5931469 1.00E-37 dispersed
Cec03g0237 Cec-Chr3:2643518 Cec03g0239 Cec-Chr3:2671772 1.80E-62 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29174 PF03195 LOB 4.50E-41 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0239 - - - 0.0