Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0289 ATGAGTAAGAAATTTTGTACCAAGCAATACTTCGCCATGCCAACAATATCCTGGCTAGATCCCTATTTGTCCCCTAATTCTCCCGCCGGTACAACTCGCCGGACCGCCGCTGCTACCTCTGCTGTCAGATCGCTACTCCTCCTCTCTTCAACGAACTTTTACAACTCTCTTTTCTTCGCCGTTGTTTTTACTAACCAGCAACAACAACAAGAATATCAACTACAAGTAGAAGAAGAAGACGACGACGACGAAGAAGATCTGCTTTCCGTTAGATATACGATCTTTATGCTGTCTGTGTATGAGCTTCCGCCACTGGCTCGGCACGTGAAGGAGGCATTTTTCGTTCTGCATGTCCAAACGTCAGCTTCAACTTGCTTCCCGGCTCTGATGGTAAATACGATATTGCTTTTTATGGTTTATCGCAATATGCATGTTGCTCAACAAAGTCGGCGCGATAAGTTAAGAGTTCCGCAGAATTATTTGCGAGTGGGGGAGTTAACAAGGAACTCTGATGAACAATTGAGTTTTCACAACTCCGAGCATTTGGGGCTTGATCTGGATCTTGTTAGAATTCAAAGTTATAACAAGGATGCGATTTTGACTCATGATCACTTGTCTTCGTTACCCTCAGAAATGATCAATTTCTCCAGAGATTCCAATGTTTTATCGCACCAAAGGGACATGATGTTGCGTCAAGAATTGGAAGACCCAGCTCAATCCAGTAGACAAATTGTGACAGATGCCTCTGGTGGAATTGTAAATAATAGTGTGGATTATTGGAAAAGCTCTCATCAAAGCTGTGATTGGGTGGTGAACTGTGGAAGTAATTCTTTTGGAGGTGAAATGTTGAATCAGGAAGTAACTGATTCTACAGTGTATTCACTGAAGCCAACTTGCATTGGATTCCAAACTTCTTCCTCTTTTAATAATCCATCCAACGAGACATTCAATCAGGATGGACAAAAGCGTATAGGAGGAGAATTGCATTTGCCTCCAATTTACCAAAATACCCTTCAGGATGTTGTTACATCAGCCTCCATTCGAACTCAGGGCCTGGAAATGGCATCCATTGTGCAGCATAATTTCACTGAAATTAACCAGACTGCTGCTTGTGAAGGCAGTGGGAATGAGCTTGCTCTTCTTCCAGTGTACAGGGATCAGTCGAATTTGTTGCCTTATGACAGTACTGGTTCTTGGACTGATAGAACTTTCTATAATTGCCGCAGCTGGATTGGTGAATTGGGCTCTATTGCTAGAAAAACCGATGAGGAGTTGAGGACTTTTATGAGTGATTCCAATCCACAAGGTCTATCCCTGTCGCTGTCTTCGAATCCGCCGTCTAAATTGCCCACCACACAGTTCGTAGAATCAGAGGAATTACAGGAAAGTATCACTGTGTTAAAAAATACCCAAGAATCCAAAACAGTCAAATCTGAGAATTTGTGTAGATTACCAAAGCCAACATCTATTGGTAATAAAAATTATGGGAAATCTCTTCAAGATGTGATGGGAGTTCCTGTCAATCCATATAGAAACACAGGTCCTCTTGGTCCCTTTACTGGGTATGCAACCATTTTAAAGAGTTCAAAATTCTTAAAGCCTGCCCAACTGCTGTTAGATGAATTTTGTGGCTCAAGTGGTCATTATAAGTTTGTCCAACCATGTGTGGTATCTGAGAAGACACCTGGGGAAGTTGGTGTCTCAGCGGCCCTTAATGCATTTAGAAATGAGGCTGTTAAGGAAAATAGTTCGTGTGCAGATGCCTCTACATTCTGCGGTTCGAATGAATCAAATGTTAGTGGAGTTGGGAGCATCTCTTCTGAATCTCATCAACCGGAGTATCAGCAAAAGAAAGCAAAACTTCTATATATGCTCGAGGAGGTTTGCAGAAGATACAAACAATATCATCAGCAAATGCAAATGGTAGTTTCATCCTTCGAATCAGTAGCTGGTCTTAGTTCTGCGACACCCTACATTTCCCTGGCACTCAAGACAGTCTCAAGACACTTTCGGTCTCTGAAGAATGCCATCTCGGAGCAACTGAAGTATCTGAGGAAGGTACTTGGTGAGGATTTGTCATCCCCCTCTGCTGGGACAAGCGGCAGCAAAGGTGGTGATGCAAATTCGGTTAGGTTGAAATACATGGAACAGAGCTTCCAGAAGCAAAAATCTGGCATTGTCAATATTGGATTCCTTGAATCCCAAAATGCATGGAGGCCACAGAGAGGGTTGCCTGAACGTGCTGTGGCAATTCTTAGAGCCTGGCTCTTTGAGCATTTTCTTCACCCATACCCCACAGACACAGATAAACACATGTTGGCCACTCAAACAGGCCTATCTCGAAACCAGGTGTCAAATTGGTTCATAAATGCCCGAGTGCGGGTGTGGAAGCCAATGGTTGAAGAGATACACATGCTAGAAACCAAGGGCATGGCAGAAATGAACAACAAAAGCCATGGTATGAGAGATGGAAGTTCTACATTAGAGAAGACTGCCGGTTGGACCAGTAGTGAACGCCAGCCTCTAAAAAACCATGGTGTTACAAATGAATTGCCTAGTCATCATTTGCAGTGCTTGGGGGTAGATTCCTCAAGTGGCGACAGAAATGGACTCGGCTGCAGCGACCAACAGTGGGATCAAGGCAAACAATCCAAATTGGACAATGGGGTTCAGTCCAACATGGAAGGGGAACTGATGGGGTTCGTGCCATATCAAGCCAGTGCAGCTGAGGTTGGAGGACTTAGAGCTGTCTCTCTAACATTAGGCCTTCGCCATCGAGTCGAGAGTGCCCACCATGAACAGCAGCGGCATCAAATGCAGCAACAAGATGACCAGCTAATACGCCACTATGGAAGCGAAATGATCCATGATTTTGTGGGGAGCCCAAGTCGCTGTTCGAGGGTTCAGAAAGTTGAAACAGCTCTCAGCAATTTCTCCATATCTCAGATGAAAAAACCTGTTATGATGTTGCTTCTGAAAGAACAATACACTCTTTTGAAAAGAGCATTCTACAATGAGCAGAGACGCATTGGTGATAACTTCAGCGGCTATAATGAATATATTCTCTTCGGCTTTTCTATTCTATGA 3087 43.73 MSKKFCTKQYFAMPTISWLDPYLSPNSPAGTTRRTAAATSAVRSLLLLSSTNFYNSLFFAVVFTNQQQQQEYQLQVEEEDDDDEEDLLSVRYTIFMLSVYELPPLARHVKEAFFVLHVQTSASTCFPALMVNTILLFMVYRNMHVAQQSRRDKLRVPQNYLRVGELTRNSDEQLSFHNSEHLGLDLDLVRIQSYNKDAILTHDHLSSLPSEMINFSRDSNVLSHQRDMMLRQELEDPAQSSRQIVTDASGGIVNNSVDYWKSSHQSCDWVVNCGSNSFGGEMLNQEVTDSTVYSLKPTCIGFQTSSSFNNPSNETFNQDGQKRIGGELHLPPIYQNTLQDVVTSASIRTQGLEMASIVQHNFTEINQTAACEGSGNELALLPVYRDQSNLLPYDSTGSWTDRTFYNCRSWIGELGSIARKTDEELRTFMSDSNPQGLSLSLSSNPPSKLPTTQFVESEELQESITVLKNTQESKTVKSENLCRLPKPTSIGNKNYGKSLQDVMGVPVNPYRNTGPLGPFTGYATILKSSKFLKPAQLLLDEFCGSSGHYKFVQPCVVSEKTPGEVGVSAALNAFRNEAVKENSSCADASTFCGSNESNVSGVGSISSESHQPEYQQKKAKLLYMLEEVCRRYKQYHQQMQMVVSSFESVAGLSSATPYISLALKTVSRHFRSLKNAISEQLKYLRKVLGEDLSSPSAGTSGSKGGDANSVRLKYMEQSFQKQKSGIVNIGFLESQNAWRPQRGLPERAVAILRAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKGMAEMNNKSHGMRDGSSTLEKTAGWTSSERQPLKNHGVTNELPSHHLQCLGVDSSSGDRNGLGCSDQQWDQGKQSKLDNGVQSNMEGELMGFVPYQASAAEVGGLRAVSLTLGLRHRVESAHHEQQRHQMQQQDDQLIRHYGSEMIHDFVGSPSRCSRVQKVETALSNFSISQMKKPVMMLLLKEQYTLLKRAFYNEQRRIGDNFSGYNEYILFGFSIL 1028
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3276003 3283875 + CePI673135_03g002890.1 Cec03g0289 197913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0289 1028 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 485 829 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cec03g0289 1028 MobiDBLite consensus disorder prediction 858 885 - -
Cec03g0289 1028 SMART HOX_1 738 802 IPR001356 GO:0003677(InterPro)
Cec03g0289 1028 CDD homeodomain 738 799 IPR001356 GO:0003677(InterPro)
Cec03g0289 1028 SMART prehox3 520 679 IPR006563 -
Cec03g0289 1028 ProSiteProfiles 'Homeobox' domain profile. 735 798 IPR001356 GO:0003677(InterPro)
Cec03g0289 1028 Pfam Homeobox KN domain 755 794 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cec03g0289 1028 Pfam Associated with HOX 525 678 IPR006563 -
Cec03g0289 1028 Gene3D - 741 803 - -
Cec03g0289 1028 FunFam BEL1-like homeodomain protein 9 741 803 - -
Cec03g0289 1028 MobiDBLite consensus disorder prediction 828 851 - -
Cec03g0289 1028 MobiDBLite consensus disorder prediction 430 451 - -
Cec03g0289 1028 SUPERFAMILY Homeodomain-like 739 804 IPR009057 -
Cec03g0289 1028 MobiDBLite consensus disorder prediction 815 885 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0289 Cec-Chr3:3276003 Cec04g1314 Cec-Chr4:32760880 2.10E-62 dispersed
Cec03g0289 Cec-Chr3:3276003 Cec10g2156 Cec-Chr10:36069655 1.90E-63 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
29179 PF07526 POX 1.40E-42 No_clan Cec TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0289 - - - 0.0