Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0325 ATGGAGGAAGTCGATGAGAAACAATGTATCAGAATTCTTCCTCACAAGCTCGTTCTCCAGAAAAAAGAGCCGGCTCTTCAATGGCTCATCGGATCGCCGTTTCTGTCGCCTTTGACTATCGTCTCCACTCTCAGATGCATCCATCATTCGTCTCCACCTGAATCTGTCTCGCCTGATTTCACCAAGGAAGCAGACGAGCTGCGGACGTTATTATTGAAGGGTTTTTGTATTATTGGAGCATTGGTTGTTGGGAATTTCAACGTCGAAGAACATGCGAGTAAGGCAGTTGATGCAGCGCGGAGATTGAGGCAGCTTCTATCTCACGGTGAAAAGACTGACAAGCAAATATTGATTGGAGCGGTTGCTGATATCAATTCTACAGATATTCACTTTTTTGTCTCCCAGTCTGAAAATGGCTCGAGCTTGGATTCTGTTTCTTCGGTTATGTACGAAAATAATGCCGAAAAATATATTTGGGAGAGAGGTTGTCTGATCCGGTGCGAACTACCGATTAGTGTACCGCTCTATATTCCTCTCAACAGTCCATCAGATGTTGAAAAGACGTACATACATGCCACAGAATCTGTTATTTCCAAGTTGAGAGACCCACAGGTGGTATATATAGTGGAACCAGTATGCAAAAACTCCACAGAAGATCCTTGTCCAGTCATTTTACGTGGTTCACAAATGGATTTCCAAATTAATCTCTCAAAGTTTAGGCAATTGAATGATGGCAACCAAAATGTTGATGGAATGTCTTTGCCATGTGCAAACTTTTGTTTAAAAAGTAAAACTGATTCCTCAACGTTTTGTTCACAGAATGCAGATATAATCCAAGTAAGTGTTCTTCTAAATAGCTCGGCAAAGTCTCAAAAATCTAGTGCACCAGTTGTAGAGTACTTTCCAGCTGTGGACAAGACCAGGCTTTTGGTTGTCGACTTGAAGGCAGAAGTTCTCTGTTATGCTGCCAAGTTTCTTCCATTGACTTATGCTGTTTCAACCTTGATCATTCCGGGTTTAGTTGACCAGTTAAACTCGATGAAGAATGCAATATTACCCAACCTTGTAAACCAACTGCCTCATCTAGTGCCATATCATTTTTGCCCTCTTGGATTTTTGCATCCAATAACTGTTATCTATGAACTCACTTATGGGGAGACTGAAATGAAGCAAGTGGAACTAAGGAAAGCCCTACACTTAAGATTAGGGTTACCTTTTGATCGTCCTGTGCTAAGAATTGCTAGTGCATTGGATTTCTCTGGCAGGAAGGACAATTTGCCACGAAAGGGTTCCTTTTTGCTCAAAGATGTTCATATTGGAATTCCAAGCAGCGGTGTTTCAGGAGGCCAAATGTCTCTGGTTCAGGGGTCGTATGAGTACCATCATTATCTTCAAGAAGGTTTCAATGACTCGGGCTGGGGTTGTGCTTATCGGTCTTTGCAAACTATCATTTCATGGTTCAGACTCCAACATTATACATCCATAGATGTTCCTTCACATAGGGAAATACAAGAAGCACTAGTGGAGATTGGTGACAAGGATGATTCATTTATTGGGTCACGTGAATGGATTGGTGCCATCGAATTGAGCTTTGTTTTAGACAAATTGCTCGGTGTGAGTTGCAAAATCATAAATGTCAGATCTGGGGCTGAACTTCCGGAGAAATGTAGAGAATTGGCTGCACACTTCGAGAATCAAGGAACTCCTATAATGATTGGTGGTGGTGTTCTTGCATACACACTCTTGGGAGTTGATTACAATGAAGCAAGTGGAGATTGTGGGTTTTTAATATTGGATCCTCACTATACAGGAAGTGATGATGTCAAGAAAATTAAGCTCGTCTGCTGCTTATGTGCAGCATCCCCAAATCCCACCAGCCAGTCTCCATCTCCGATTTTCCTCCATTTTCTCGAAGAAGAAGAGGAGGAAGCAGAAGAAGTTAAGGAAAGTTATGGAGGAAACAAGACGGAAGAGGATTGGAACGACCCATTATTCAGATTTTTCAAATCCCGGACTTCAACAACGCAAGACCCTCTACGGGAAAGCAAATTGTCCCTTCAGAAGAATCGCCGTTCGTCGTGGCATCTTGCCTCCGATGTTGAATTTTCCGATGAAGCTGAAACTGCACTCGTGGAAGACAAGGGAAAATTGGGTTCTGTGAGTCGGAATTCTAGGGTCTTGCCGGATGGTCTCGTCGGAGACATTGTGCGAATTGCGAGGAATTTGCCGCAGAATACGACTTTGGGGGAGACTTTGGGAGATTTTGAAGGAAGAATTAGTGAGAAAGAATGTCTGGAGGTGCTGCGCTTGTTGGGTGAGGAGAATCTTGTGGTATGTTGCTTGTACTTCTTTGAATGGATGGGTTTGCAGGAGACTTCGCTTGTTACACCTCGTGCTTATTCTCTTCTCTTTCCATTGTTGGGAAGAGCTGGAATGGGAGAAAAAATTATGGTGTTATTCAAGAACCTTCCACTCAAGAAGGAATTTCAGGATGTTCATGTATATAATTCTGCAATGTCTGGGCTTATGGTCTGCAAGAGGTACGATGATGCTTGCAAGGTGTACGAGGCCATGGAAACAAATAATGTCAATCCAGATCATGTGACATGTTCTATAATGATTACAATCATGAGAAAAATTGGCCGGAGTGCAAAGGATTCGTGGGATTACTTTGAGAAAATGAACAAAAAAGGAGTAAAATGGAGTCCAGAAGTTTTAGGTGCTCTGATTAAATCGTTTTGCGACGAGGGGCTGAAGAGTCAAGCACTTATCATCCAATTGGAAATGGAGAAGAAAGGGCTTGCTTTGAATGCGATCATGTATAATACAATCATGGATGCTTTTAGTAAATCGAATCAAATCGAGGAAGCTGAAGGTATCTTTGCTGAAATGAAATCTAAAGGAGTGAAACCAACGAGTGCAAGTTTTAACATCTTGATGGATGCATACAGTAGGAGGATGCAACCTGAGATTGTTGAGAAGCTTCTGGTTGAAATGAAGGACATGGGATTGGAGCCTAATGTGAAGTCATACACTTGCTTGATTAGTGCTTATGGGAGGCAGAAGAAAATGAGTGACATGGCTGCAGATGCATTTTTGAGAATGAAAAAGAACGGTATAAGGCCAACCTCTCATTCATATACAGCCCTGATTCACGCTTATTCAGTTAGCGGTTGGCACGAGAAAGCTTACTCGACATTCGAGAACATGCTGCAAGAAGGTTTAAAGCCATCCATTGAAACTTACACGACTCTTCTTGATGCATTTAGGCGTGCCGGTGATACTGTGGCGTTGATGAAAATATGGAAGTTAATGATTAGAGAAAAAATAGTAGGGACAAGAGTAACATTCAACATACTGCTAGATGGGTTTGCAAAACAGGGTCATTATGTTGAAGCTAGAGATGTGATCTCTGAGTTTGATAAGATTGGGTTACAACCAACTGTTATGACATACAACATGTTGATGAATGCATATGCTAGGGGAGGTCAACATTTAAAGATGCCACAGCTGCTGCAAGAGATGGCTGCTCGGGAACTAAAACCCGACTCCGTTACTTATTCGACCATGATTTACGCCTTTGTACGTGTTCGCGATTTCAAAAGAGCTTTCTTTTATCACAAGAAGATGGTCAAAAGTGGACAAGTGCCTGATGTGAAGTCATACCAGAAACTTAGATCAATCTTGGATGTAAAACTTGCTACAAAGAACAGGAAAGACAAGAGTGCCATTCTTGGTATAATAAACAGCAAAATGGGAATGGTGAAAGCTAAGAAGAAGGGCAAGAAAGATGAGTTTTGGAAGAACAAGAGAAAGCATGAAGCATTGGAGTTCCTTGAGAGCCCAAGAACCATGGTTGGGGTTGTGCTTACCGCTCTTTGCAAACTATCATTTCATGGTGATTCCAACATAACATCCATAGCTGTTACTTCACATAGCATTCCTATCATTTTCATCTCCTATTCTATAGAATTTTCTTGCTCTAATTTGGCCTCAGGTTTAGCGGGTGGCACAAGAAAGCTAACTCGACATTTCAAGAACATGTTGCACGAAGGCTTAAAGCCTTCCATTGAAACTTACACGACTCTACTCAATGCATTTAGGAGTGCCGGGAGGCCAACATCTAAAGATGCCACAGCTGCTGCAAGAGATGGCTGTTTTGGAATTAAAACCCGACTCCGTTGCTTATTCGACCATGATTTACGCCTTCATACATGTTCGCAATTTCAAAAGAGCTTTCTTCTATTCTATCATAAGATGGTTAAAAGTGGACAAGTGCTTGATGTGAAGTCCTACCAAAAACTTAGAACAATCTTGGATGTAAACCTTGCTACAAAGAGCAGGAAAGACAAGAATGCCATTCTATAA 4368 41.76 MEEVDEKQCIRILPHKLVLQKKEPALQWLIGSPFLSPLTIVSTLRCIHHSSPPESVSPDFTKEADELRTLLLKGFCIIGALVVGNFNVEEHASKAVDAARRLRQLLSHGEKTDKQILIGAVADINSTDIHFFVSQSENGSSLDSVSSVMYENNAEKYIWERGCLIRCELPISVPLYIPLNSPSDVEKTYIHATESVISKLRDPQVVYIVEPVCKNSTEDPCPVILRGSQMDFQINLSKFRQLNDGNQNVDGMSLPCANFCLKSKTDSSTFCSQNADIIQVSVLLNSSAKSQKSSAPVVEYFPAVDKTRLLVVDLKAEVLCYAAKFLPLTYAVSTLIIPGLVDQLNSMKNAILPNLVNQLPHLVPYHFCPLGFLHPITVIYELTYGETEMKQVELRKALHLRLGLPFDRPVLRIASALDFSGRKDNLPRKGSFLLKDVHIGIPSSGVSGGQMSLVQGSYEYHHYLQEGFNDSGWGCAYRSLQTIISWFRLQHYTSIDVPSHREIQEALVEIGDKDDSFIGSREWIGAIELSFVLDKLLGVSCKIINVRSGAELPEKCRELAAHFENQGTPIMIGGGVLAYTLLGVDYNEASGDCGFLILDPHYTGSDDVKKIKLVCCLCAASPNPTSQSPSPIFLHFLEEEEEEAEEVKESYGGNKTEEDWNDPLFRFFKSRTSTTQDPLRESKLSLQKNRRSSWHLASDVEFSDEAETALVEDKGKLGSVSRNSRVLPDGLVGDIVRIARNLPQNTTLGETLGDFEGRISEKECLEVLRLLGEENLVVCCLYFFEWMGLQETSLVTPRAYSLLFPLLGRAGMGEKIMVLFKNLPLKKEFQDVHVYNSAMSGLMVCKRYDDACKVYEAMETNNVNPDHVTCSIMITIMRKIGRSAKDSWDYFEKMNKKGVKWSPEVLGALIKSFCDEGLKSQALIIQLEMEKKGLALNAIMYNTIMDAFSKSNQIEEAEGIFAEMKSKGVKPTSASFNILMDAYSRRMQPEIVEKLLVEMKDMGLEPNVKSYTCLISAYGRQKKMSDMAADAFLRMKKNGIRPTSHSYTALIHAYSVSGWHEKAYSTFENMLQEGLKPSIETYTTLLDAFRRAGDTVALMKIWKLMIREKIVGTRVTFNILLDGFAKQGHYVEARDVISEFDKIGLQPTVMTYNMLMNAYARGGQHLKMPQLLQEMAARELKPDSVTYSTMIYAFVRVRDFKRAFFYHKKMVKSGQVPDVKSYQKLRSILDVKLATKNRKDKSAILGIINSKMGMVKAKKKGKKDEFWKNKRKHEALEFLESPRTMVGVVLTALCKLSFHGDSNITSIAVTSHSIPIIFISYSIEFSCSNLASGLAGGTRKLTRHFKNMLHEGLKPSIETYTTLLNAFRSAGRPTSKDATAAARDGCFGIKTRLRCLFDHDLRLHTCSQFQKSFLLFYHKMVKSGQVLDVKSYQKLRTILDVNLATKSRKDKNAIL 1455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3694216 3708396 + CePI673135_03g003250.1 Cec03g0325 197949

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0325 1455 Coils Coil 634 657 - -
Cec03g0325 1455 Pfam Peptidase family C78 450 610 IPR012462 -
Cec03g0325 1455 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 937 971 IPR002885 -
Cec03g0325 1455 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1148 1182 IPR002885 -
Cec03g0325 1455 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 831 865 IPR002885 -
Cec03g0325 1455 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1007 1042 IPR002885 -
Cec03g0325 1455 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1043 1077 IPR002885 -
Cec03g0325 1455 NCBIfam pentatricopeptide repeat 1045 1078 IPR002885 -
Cec03g0325 1455 NCBIfam pentatricopeptide repeat 975 1008 IPR002885 -
Cec03g0325 1455 NCBIfam pentatricopeptide repeat 1151 1184 IPR002885 -
Cec03g0325 1455 NCBIfam pentatricopeptide repeat 939 972 IPR002885 -
Cec03g0325 1455 NCBIfam pentatricopeptide repeat 1185 1219 IPR002885 -
Cec03g0325 1455 NCBIfam pentatricopeptide repeat 1010 1043 IPR002885 -
Cec03g0325 1455 NCBIfam pentatricopeptide repeat 834 866 IPR002885 -
Cec03g0325 1455 NCBIfam pentatricopeptide repeat 1081 1111 IPR002885 -
Cec03g0325 1455 NCBIfam pentatricopeptide repeat 1115 1142 IPR002885 -
Cec03g0325 1455 Gene3D - 432 621 - -
Cec03g0325 1455 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1113 1147 IPR002885 -
Cec03g0325 1455 Gene3D Tetratricopeptide repeat domain 920 1061 IPR011990 GO:0005515(InterPro)
Cec03g0325 1455 Gene3D Tetratricopeptide repeat domain 1062 1288 IPR011990 GO:0005515(InterPro)
Cec03g0325 1455 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1183 1217 IPR002885 -
Cec03g0325 1455 SUPERFAMILY Cysteine proteinases 468 607 IPR038765 -
Cec03g0325 1455 Gene3D Tetratricopeptide repeat domain 731 887 IPR011990 GO:0005515(InterPro)
Cec03g0325 1455 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 972 1006 IPR002885 -
Cec03g0325 1455 PANTHER UFM1-SPECIFIC PROTEASE 2 140 612 IPR051250 -
Cec03g0325 1455 Pfam PPR repeat family 937 984 IPR002885 -
Cec03g0325 1455 Pfam PPR repeat family 831 875 IPR002885 -
Cec03g0325 1455 Pfam PPR repeat family 1147 1195 IPR002885 -
Cec03g0325 1455 Pfam Ubiquitin-fold modifier 1 specific protease 2, N-terminal 273 420 IPR049387 -
Cec03g0325 1455 Pfam Pentatricopeptide repeat domain 994 1054 IPR002885 -
Cec03g0325 1455 Pfam Pentatricopeptide repeat domain 1067 1124 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0325 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g882 . Blo16g00245 . . . . Bma06g00240 . Cmo13g00801 Cmo18g00086 . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00459 Csa01g00915 Chy12g01209 Cme12g01631 . . Bda11g01628 . . . . . . . . Cma13g00772 Cma18g00109 Car13g00619 . . . . . . . . . . Cla03g00315 Cam03g0334 Cec03g0325 Cco03g0338 Clacu03g0335 Cmu03g0941 Cre03g0635 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003460 2 1 2 2 1 1 2 1 1 1 1 1 2 2 2 2 1 2 1 1 2 2 2 2 2 1 2 2 2 2 48