Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0343 ATGAGTGAAAAGCCAGACGGCGGCGTTGAAATTGGGCCTAAGAAAAGGGGCTTTCCTTTTAGAACTATGGGCCTCAGGCCCACAAGAAAATTTGAAACCAAGATCAAGATCGGAATCAATGGATTTGGAAGAATCGGTAGGTTGGTCGCTAGAGTTGCTTTACAGAGAGACGATGTTGAACTCGTTGCTGTTAACGATCCTTTCATCACCACTGATTACATGACCTACATGTTCAAGTACGACAGTGTTCACGGTCACTGGAAGCACAGTGAGGTGAAGGTGAAGGACTCTAAGACCCTTCTTTTTGGTGAAAAAGCCGTCACTGTTTTTGGCGTCAGAAATCCGGAAGAGATCCCATGGGGTGAGACCGGTGCGGAATACATTGTAGAGTCCACTGGTGTTTTCACAGACAAAGACAAAGCTGCTACTCATTTGAAGGGTGGTGCCAAGAAGGTTATCATCTCTGCCCCCAGCAAGGATGCTCCCATGTTTGTTGTAGGAGTCAACGAGAAGGAATACAAGCCAGAACTTAACGTTATTTCTAATGCTAGCTGCACCACCAACTGCCTTGCTCCTCTTGCAAAGGTTATCAATGACAGATTTGGCATTGTTGAGGGTCTGATGACCACTGTTCACGCAATCACTGCCACACAAAAGACTGTTGACGGGCCATCCAGCAAAGACTGGAGGGGTGGAAGAGCTGCTTCATTTAACATCATTCCTAGCAGCACTGGAGCTGCCAAGGCCGTCGGCAAAGTCCTCCCTGCATTGAATGGGAAATTGACCGGAATGTCTTTCCGTGTTCCCACCGTTGATGTCTCTGTCGTTGATCTTACAGTGAGGTTGGAAAAGAAGGCCTCTTATGAGGACATTAAGGCAGCCATCAAGGAAGAATCTGAGGGAAAATTGAAGGGAATTTTGGGGTACACTGAAGACGATGTTGTGTCCTCTGACTTCGTTGGTGACAGCAGGTCAAGCATCTTCGATGCCAAGGCCGGCATTGCATTGAATGATAACTTTGTTAAACTTGTCTCGTGGTACGACAACGAAGTAGGATACAGTACTCGTGTCGTTGACTTGATTGTCCACATCGCATCTGTCCATGGGCATCGACCCACCACTTTCACCTTAATTATTTTGCTCACTTTTCAAGGCTCCCCATTTCTTTCAGCTACCTCCTACGGTCCATACATTCCCGTTCCGTCTCACACCAGTTATCCCCTTCATTTGCCACCGACCGCCGTTCCCACTTTCTTGTCGCTTTCTTTTCTCTGGACTTTAAAACCCTTCCTTCTTCCATTTTCACCCACCAAGATCAAGATTGGAATCAACGGATTTGGAAGGATCGGGAGGTTGGTAGCAAGGGTTGCTCTCCAGAGAAACGATGTTGAACTCGTCGCTGTTAACGACCCTTTTATCACCACTGATTACATGACCTACATGTTCAAGTACGACAGTGTTCATGGCCAATGGAAGCATCAAGACGTGAAGGTTAAGGATTCTAAGACCCTTCTCTTTGGTGAGCAGCCTGTTACAGTTTTTGGTGTCAGGAATCCAGAGGAGATCCCATGGGGTGAGACTGGAGCTGAGTATATTGTAGAGTCAACTGGTGTTTTCACAGACAAAGACAAGGCTGCTGCCCATTTGAAGGGTGGTGCAAAGAAGGTTATCATCTCAGCTCCCAGCAAGGATGCTCCCATGTTTGTTGTGGGAGTCAATGAGAAGGAATACAAACCAGATCTCGATGTTATATCTAATGCTAGCTGCACTACCAACTGTCTTGCTCCTCTTGCAAAGGTCATTCATGATAGATTTGGCATTGTTGAGGGTTTGATGACTACTGTTCACTCAATGACTGCCACCCAAAAGACTGTTGATGGACCATCTAGCAAAGACTGGAGAGGTGGAAGAGCTGCTTCATTCAACATCATCCCTAGCAGTACTGGAGCTGCTAAGGCTGTTGGCAAAGTGCTGCCTGCATTGAACGGAAAACTCACCGGTATGGCTTTCCGTGTTCCTACCGTTGATGTCTCAGTAGTTGACCTTACAGTGAGGTTGGAGAAGCCAGCATCGTATGATGATATTAAAGCTGCCATTAAGGAGGAGTCTGAGGGAAAGCTGAAAGGAATTTTGGGTTACACCGAAGAGGAGGTGGTGTCCACCGATTTTTTGGGTGACAACAGGTCAAGTATTTTCGACGCCAAGGCCGGGATCGCACTGACCGAACACTTTGTGAAGCTTGTCTCGTGGTACGACAACGAGTTAGGCTACAGTACACGTGTTATCGACTTGATTGTTCACATTGCTTCTGTCCATTAA 2319 46.87 MSEKPDGGVEIGPKKRGFPFRTMGLRPTRKFETKIKIGINGFGRIGRLVARVALQRDDVELVAVNDPFITTDYMTYMFKYDSVHGHWKHSEVKVKDSKTLLFGEKAVTVFGVRNPEEIPWGETGAEYIVESTGVFTDKDKAATHLKGGAKKVIISAPSKDAPMFVVGVNEKEYKPELNVISNASCTTNCLAPLAKVINDRFGIVEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKKASYEDIKAAIKEESEGKLKGILGYTEDDVVSSDFVGDSRSSIFDAKAGIALNDNFVKLVSWYDNEVGYSTRVVDLIVHIASVHGHRPTTFTLIILLTFQGSPFLSATSYGPYIPVPSHTSYPLHLPPTAVPTFLSLSFLWTLKPFLLPFSPTKIKIGINGFGRIGRLVARVALQRNDVELVAVNDPFITTDYMTYMFKYDSVHGQWKHQDVKVKDSKTLLFGEQPVTVFGVRNPEEIPWGETGAEYIVESTGVFTDKDKAAAHLKGGAKKVIISAPSKDAPMFVVGVNEKEYKPDLDVISNASCTTNCLAPLAKVIHDRFGIVEGLMTTVHSMTATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKPASYDDIKAAIKEESEGKLKGILGYTEEEVVSTDFLGDNRSSIFDAKAGIALTEHFVKLVSWYDNELGYSTRVIDLIVHIASVH 772
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3832382 3839282 + CePI673135_03g003430.1 Cec03g0343 197967

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0343 772 Gene3D - 35 362 - -
Cec03g0343 772 FunFam Glyceraldehyde-3-phosphate dehydrogenase 35 194 - -
Cec03g0343 772 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 184 347 - -
Cec03g0343 772 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 438 605 IPR036291 -
Cec03g0343 772 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 36 359 IPR006424 GO:0006006(InterPro)|GO:0016620(InterPro)|GO:0050661(InterPro)|GO:0051287(InterPro)
Cec03g0343 772 NCBIfam glyceraldehyde-3-phosphate dehydrogenase, type I 440 763 IPR006424 GO:0006006(InterPro)|GO:0016620(InterPro)|GO:0050661(InterPro)|GO:0051287(InterPro)
Cec03g0343 772 FunFam Glyceraldehyde-3-phosphate dehydrogenase 184 349 - -
Cec03g0343 772 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 35 138 IPR020828 GO:0051287(InterPro)
Cec03g0343 772 Pfam Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 439 542 IPR020828 GO:0051287(InterPro)
Cec03g0343 772 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 190 347 IPR020829 GO:0016620(InterPro)
Cec03g0343 772 Pfam Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 594 751 IPR020829 GO:0016620(InterPro)
Cec03g0343 772 Gene3D - 439 766 - -
Cec03g0343 772 Gene3D Dihydrodipicolinate Reductase; domain 2 184 349 - -
Cec03g0343 772 Gene3D Dihydrodipicolinate Reductase; domain 2 588 753 - -
Cec03g0343 772 PANTHER GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE 30 366 IPR020831 GO:0004365(PANTHER)|GO:0005829(PANTHER)|GO:0006096(PANTHER)|GO:0016620(InterPro)
Cec03g0343 772 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 588 751 - -
Cec03g0343 772 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 34 201 IPR036291 -
Cec03g0343 772 FunFam Glyceraldehyde-3-phosphate dehydrogenase 588 753 - -
Cec03g0343 772 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 183 190 IPR020830 GO:0016620(InterPro)
Cec03g0343 772 SMART gp_dh_n_7 35 185 IPR020828 GO:0051287(InterPro)
Cec03g0343 772 SMART gp_dh_n_7 439 589 IPR020828 GO:0051287(InterPro)
Cec03g0343 772 ProSitePatterns Glyceraldehyde 3-phosphate dehydrogenase active site. 587 594 IPR020830 GO:0016620(InterPro)
Cec03g0343 772 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 548 561 IPR020831 GO:0016620(InterPro)
Cec03g0343 772 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 667 684 IPR020831 GO:0016620(InterPro)
Cec03g0343 772 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 583 601 IPR020831 GO:0016620(InterPro)
Cec03g0343 772 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 610 626 IPR020831 GO:0016620(InterPro)
Cec03g0343 772 PRINTS Glyceraldehyde-3-phosphate dehydrogenase signature 707 722 IPR020831 GO:0016620(InterPro)
Cec03g0343 772 FunFam Glyceraldehyde-3-phosphate dehydrogenase 439 598 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0343 K00134 - - csv:101213074 639.417
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0343 Cec-Chr3:3832382 Cec11g0707 Cec-Chr11:7862757 9.70E-177 dispersed
Cec03g0343 Cec-Chr3:3832382 Cec02g1963 Cec-Chr2:37485713 1.10E-140 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g920 . . . . . . . . Cmo13g00818 Cmo18g00195 . . . . . Cpe20g00323 . . . . . . . . . . . . . . . . Cone16ag0036 . . Lsi02g00479 Csa01g00941 Chy12g01188 Cme12g01610 . . . . . Bpe15g00204 Bma03g01272 . . . . Cma13g00787 Cma18g00218 Car13g00636 Car18g00213 Cpe09g00978 . Bhi08g01716 Tan05g2926 Cmetu12g0879 . Hepe07g2148 . . Cla03g00337 Cam03g0352 Cec03g0343 Cco03g0358 Clacu03g0353 Cmu03g0958 Cre03g0651 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0015008 0 0 0 0 0 1 2 1 1 0 1 1 1 0 0 1 1 0 2 1 0 0 0 1 1 0 0 1 0 0 16