Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0347 ATGGCAGATCGGAATCACTTTAACGCCGCCCATTTCGTTGATCTTCGAAGCGGTTTCTGTCCTCAGACGCAGATTTTCCACAGCCTCCGACCACCGCTCTCACTTCCACCATTATCTCAGCCTCTCTCCGTCACCGAACACGCTCTTTCTCTCCTTCAATCATCCCCTCCCCCTGCAAACGCAACCGTTCTCATCGACTCCAACTCTGGCTTCCATCTCTCCTACGCCATTTTCATCCGTCAAATTCGAACCCTCGCCTCAAATCTCAAAGCTTTAACCTCCCTCTCCAATGGACAAGTGGCGTTTATTCTCGCTCCGACTTCTCTGCAAGTCCCTGTGTTGTATTTCGCTCTGTTATCTCTCGGTGTCATTCTCTCTCCGGCAAATCCAACCGGTTCCGAATCAGAGATTTCTCATCAGATTCGACTCAGTAAACCGGTCATTGCCTTCGCTACATCCTCAACGGCGTCCAAGCTCCCTAGGTTTCGATTCGGAACCGTCCTGATCGATTCACCTCATTTCCTCTCCATGATGACTGAAATCAACATATCCGATCGTCTCACCGACATCAAAATCGATCAGTCGGACTCGGCGGCGATTCTGTACTCGTCAGGTACCACAGGGCGAGTGAAAGGCGTGTTACTGAGTCATCGCAATCTTATTGCTGTGAACTCAGGGCGTACTGCTCTTCAATCGGAGATCAAAGAAGAAGAAATGGAGCCACATCCGGTTTCTCTGTGTCTGTTGCCTTTGTTCCATGTTTTCGGATTCGTGATATTGCTTCGAGCGATTTCGCGAGGAGAAACGTTGGTTCTGATGCAGAGATTCGATTTCGAAGCGATGCTAAGAGCAGTGGAGAAGTTTAGGGTTATGTACATCCCTGTTTCTCCGCCGCTTGTGGTGGCGATGGCGAAGTCGGAACTGGTGGCGAAATACGATCTCAGTTCTCTTCAAGTTTTGGGGTGCGGCGGCGCTCCCCTTGGGAAAGAAGTGATCGATAAATTCCATCAGAAATTGCCCAACGTTGAAATTGTCCAGGGATATGGCTTGACAGAGAGTACAGCGGGGGCAGCAAGAACTCTGGGGCCTGAGGAAACCAACAACACCAATTCAGTAGGTCGCTTATCTGAAAATATGGAAGCCAAGATAGTGGATCCTGCATCTGGAGAGGCCTTACCTCCTGGCCACAAAGGAGAGCTTTGGCTGCGAGGTCCTGTAATCATGAAAGGTTATGTTGGAGATGACAAGGCAACTAATGAAACCTTACATCCAAATGGATGGCTAAAGACTGGTGATCTTTGCTATTTTGATTCTGATGGATTCCTGTACATTGTTGATAGATTAAAAGAATTGATCAAGTACAAGGCTTATCAGGTCCCACCTGCAGAATTGGAACATTTGCTTCAATCCAACCCTGAAATAATTGATGCTGCCGTGATACCCTATCCTGATGAAGAAGCTGGAGAGATTCCTATGGCTTATGTTGTTAGAAAGCCCAGAAGCAATATCACTGAGGCCCAAGTTATTGATTTCATTGCAAAACAGGTTGCGCCGTACAAGAAAATTCGACGAGTTTCTTTTATCGACGCAATCCCGAAATCGCCTGCAGGGAAGATTCTAAGGAGGGAGCTTGCGAAACATGCTCTCTCACATGGTTCTAATAAGTTGTAA 1671 47.64 MADRNHFNAAHFVDLRSGFCPQTQIFHSLRPPLSLPPLSQPLSVTEHALSLLQSSPPPANATVLIDSNSGFHLSYAIFIRQIRTLASNLKALTSLSNGQVAFILAPTSLQVPVLYFALLSLGVILSPANPTGSESEISHQIRLSKPVIAFATSSTASKLPRFRFGTVLIDSPHFLSMMTEINISDRLTDIKIDQSDSAAILYSSGTTGRVKGVLLSHRNLIAVNSGRTALQSEIKEEEMEPHPVSLCLLPLFHVFGFVILLRAISRGETLVLMQRFDFEAMLRAVEKFRVMYIPVSPPLVVAMAKSELVAKYDLSSLQVLGCGGAPLGKEVIDKFHQKLPNVEIVQGYGLTESTAGAARTLGPEETNNTNSVGRLSENMEAKIVDPASGEALPPGHKGELWLRGPVIMKGYVGDDKATNETLHPNGWLKTGDLCYFDSDGFLYIVDRLKELIKYKAYQVPPAELEHLLQSNPEIIDAAVIPYPDEEAGEIPMAYVVRKPRSNITEAQVIDFIAKQVAPYKKIRRVSFIDAIPKSPAGKILRRELAKHALSHGSNKL 556
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3879341 3884157 - CePI673135_03g003470.1 Cec03g0347 197971
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0347 556 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 19 544 - GO:0016405(PANTHER)
Cec03g0347 556 Pfam AMP-binding enzyme C-terminal domain 463 538 IPR025110 -
Cec03g0347 556 Gene3D - 450 550 IPR045851 -
Cec03g0347 556 CDD 4CL 47 544 - -
Cec03g0347 556 Pfam AMP-binding enzyme 58 411 IPR000873 -
Cec03g0347 556 FunFam 4-coumarate--CoA ligase 2 450 551 - -
Cec03g0347 556 Gene3D - 34 449 IPR042099 -
Cec03g0347 556 ProSitePatterns Putative AMP-binding domain signature. 200 211 IPR020845 -
Cec03g0347 556 SUPERFAMILY Acetyl-CoA synthetase-like 60 550 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0347 Cec-Chr3:3879341 Cec05g1691 Cec-Chr5:28083572 6.20E-133 dispersed
Cec03g0347 Cec-Chr3:3879341 Cec03g0348 Cec-Chr3:3889011 1.80E-249 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0347 K01904 - csv:101213796 929.087