Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0353 ATGGCTCAGATAATGGGAGGCTCTCTGTTCTCATCTGCTCCCGTTGGGTTTCACCAATCCAAAACAGAGGCGGTGGCGAGTTATTGCAGAATTTCTGGCCTGACGAAGTTGCATTCATTTCAAGAGCTGGGTGCAAAAACGTGTGAAATCCATGGCAATGGCATAGCTAGTAACAGGGTTGGTGTTCTGCGGTCGAATAAGAAAAGCGTTATTCGGGCAATATTGCAGAGTGAGAGAGAGATAGAAACTACCAATGGTATAGGAACTAGAGGTTTGCGTGGGCAGTTGAACAAGGTTGTTCTTGCTTACAGTGGTGGCTTAGACACATCAGTCATCGTCCCCTGGCTGAGGGAGAATTATGGTTGTGAAGTTGTATGTTTTACTGCAGATGTTGGTCAAGGTATGAAGGAATTGAAAGGTTTGGAAAAGAAGGCTATAGCAAGTGGGGCTTCTAAATTGGTGGTAAAGGATTTGAGGGAAGAATTTGTAAAAGACTTCATATTTCCTTGTTTACGTGCTGGTGCAATTTATGAAAGAAAATACCTTCTTGGAACGTCAATGGCTCGTCCTGTAATAGCAAAGGCGATGGTGGATGTTGCGAATGAAGTTGGGGCTGATGCAGTTTCTCATGGATGCACTGGAAAAGGAAATGATCAAGTACGGTTTGAATTGGCATTTTTTGCTCTAAATCCCAATCTAAAAGTGGTGGCACCATGGAGAGAATGGGATATTACTGGGAGACAAGATGCTATTCAGTATGCCAAGGATCATAATATACCTATTCCAGTCACCAAGGAATCAATTTACAGTCGAGACGCCAACTTGTGGCATCTTAGTCACGAGGGAGATGTTTTGGAGGATCCAGCAAATGAACCTAAAAAGGAGATGTATATGATATCAACGGATCCAGAAGATGCACCAGATCAACCTGAATATGTGGAAATAGGGATTGTGGGAGGTGTCCCTGTATCCGTCAATGGCCAGGTTCTTTCACCACCTTCTCTTCTAGCCAAAGTAAACGAAATTGGTGGAAAGCATGGAATTGGAAGGATCGACATGGTCGAAAACCGTCTGGTGGGCATGAAAAGCAGAGGCGTCTACGAAACCCCAGGAGGAACCATCCTTTTCACAGCCACCCGTGAGCTCGAGTCTCTAACACTTGACCGAGAGACGATTCAAGTGAAAGACTCATTGGCTCTCAAATATGCAGAGCTGGTTTATGCAGGAAGATGGTTCGACCCTCTTCGTGAATCCATGGATGCTTTCATGGAGAAGATCACAGAGACCACCACTGGCTCAGTCACTCTCAAGCTCTACAAGGGTTCCGTCCATGTGGCCAGCCGCCGGAGTCTGTACAGTCTTTATAGGGAAGATATCTCCTCCTTTGAAAATGGGCAGATTTACAATCAGGCTGATGCTGCTGGTTTCATTCGCCTTTACGGCCTTCCCACCAGAGTTAGGGCAATGCTTCACTAG 1476 45.53 MAQIMGGSLFSSAPVGFHQSKTEAVASYCRISGLTKLHSFQELGAKTCEIHGNGIASNRVGVLRSNKKSVIRAILQSEREIETTNGIGTRGLRGQLNKVVLAYSGGLDTSVIVPWLRENYGCEVVCFTADVGQGMKELKGLEKKAIASGASKLVVKDLREEFVKDFIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVANEVGADAVSHGCTGKGNDQVRFELAFFALNPNLKVVAPWREWDITGRQDAIQYAKDHNIPIPVTKESIYSRDANLWHLSHEGDVLEDPANEPKKEMYMISTDPEDAPDQPEYVEIGIVGGVPVSVNGQVLSPPSLLAKVNEIGGKHGIGRIDMVENRLVGMKSRGVYETPGGTILFTATRELESLTLDRETIQVKDSLALKYAELVYAGRWFDPLRESMDAFMEKITETTTGSVTLKLYKGSVHVASRRSLYSLYREDISSFENGQIYNQADAAGFIRLYGLPTRVRAMLH 491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 3938126 3951206 - CePI673135_03g003530.1 Cec03g0353 197977

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0353 491 Gene3D HUPs 98 267 IPR014729 -
Cec03g0353 491 Pfam Arginosuccinate synthase N-terminal HUP domain 98 260 IPR048267 -
Cec03g0353 491 Gene3D Argininosuccinate synthetase, chain A, domain 2 158 448 IPR024074 GO:0004055(InterPro)
Cec03g0353 491 Gene3D Single helix bin 468 491 - -
Cec03g0353 491 PANTHER ARGININOSUCCINATE SYNTHASE 95 490 IPR001518 GO:0000050(PANTHER)|GO:0000053(PANTHER)|GO:0004055(InterPro)|GO:0004055(PANTHER)|GO:0005524(InterPro)|GO:0005737(PANTHER)|GO:0006526(PANTHER)|GO:0006526(InterPro)
Cec03g0353 491 FunFam Argininosuccinate synthase 270 491 - -
Cec03g0353 491 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 97 261 - -
Cec03g0353 491 NCBIfam argininosuccinate synthase 98 486 IPR001518 GO:0004055(InterPro)|GO:0005524(InterPro)|GO:0006526(InterPro)
Cec03g0353 491 ProSitePatterns Argininosuccinate synthase signature 2. 211 222 IPR018223 GO:0004055(InterPro)|GO:0005524(InterPro)|GO:0006526(InterPro)
Cec03g0353 491 Pfam Arginosuccinate synthase C-terminal domain 269 486 IPR048268 -
Cec03g0353 491 FunFam Argininosuccinate synthase 93 269 - -
Cec03g0353 491 CDD Argininosuccinate_Synthase 99 483 IPR023434 GO:0004055(InterPro)
Cec03g0353 491 Hamap Argininosuccinate synthase [argG]. 96 491 IPR023434 GO:0004055(InterPro)
Cec03g0353 491 SUPERFAMILY Argininosuccinate synthetase, C-terminal domain 266 490 IPR024074 GO:0004055(InterPro)
Cec03g0353 491 ProSitePatterns Argininosuccinate synthase signature 1. 102 110 IPR018223 GO:0004055(InterPro)|GO:0005524(InterPro)|GO:0006526(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0353 K01940 - - csv:101215247 916.761
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0353 Cec-Chr3:3938126 Cec06g1973 Cec-Chr6:33000306 1.20E-199 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g138 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lsi02g00493 Csa01g00955 Chy12g01177 . . . . . . . . . Sed08g2444 . . . . . . Cpe09g00968 . Bhi08g01467 Tan05g2944 Cmetu07g1959 . . . . Cla03g00346 Cam03g0364 Cec03g0353 . . Cmu03g0970 Cre03g0662 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001306 1 3 2 2 1 3 4 2 2 3 2 2 4 2 3 5 3 2 4 3 3 2 2 2 2 3 2 3 2 2 76