Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cec03g0381 ATGGGTTGCGTTCTTGGCAGACAAACCGCCGACGCTCGCCTGGGCACATCCGGACCTCCCCGTCGCCGCCGGACCACGGATCAACTCTTTCATATGGACGGAGTTAATGGCGACAGAGTTAAGAAACAGACGACTACGTTGGAAAACCAGGGAGTTCGGCAGGACCTGGATTCCTTCTCCGTAGAGCGCCGGAGGCCTTCGCCGAGCCTTTGCCAGAGGAATGAGCAAGGTTGGCCGTCGTGGCTGCTGGCGGTCGCTGGCGAGGTGATCCAAGGATGGACGCCTCGTCGAGCCAATACGTTCGAGAAACTTGCTAAGATTGGGCAAGGGACGTATAGTAATGTGTACAAGGCGAGGGATCTTATTACTGGCAAAATTGTTGCTCTGAAAAAGGTTAGGTTTGATAATTTAGAACCGGAGAGCGTAAGGTTTATGGCTAGAGAGATTTTGGTCCTGAAACGTCTCGATCATCCCAATGTGCTTAAGCTCGAAGGCTTAGTTACATCGAGAATGTCGTGTAGTCTTTACTTAGTGTTTGAGTATATGGAACACGACCTCGCCGGACTTGCTGCCGGTCAAGGAGTCAAGTTCACGGAGCCTCAGGTCAAATGCTATATGAAGCAACTATTGTCCGGGCTTGAGCACTGTCACAACCGAGGTGTATTGCATCGTGATATTAAAGGTTCCAATTTGCTAATTGATAACGAAGGAATACTGAAAATAGCTGATTTTGGTTTAGCTACTTTCTTTGATCCTGAACAGAACCAGCATATGACCAGTCGAGTAGTAACCCTTTGGTACCGTCCTCCTGAATTATTACTTGGAGCGACTCTTTATGGTACAGGGGTTGATCTTTGGAGTGCTGGCTGCATCTTGGCCGAGCTGCTCGCTGGGAGGCCAATCATGCCAGGAAGGACAGAGGTTGAACAACTTCACAAGATATTTAAATTATGTGGTTCTCCATCTGAAGATTACTGGAAGAAGTACAAATTGGCAAATGCAACTCTATTTAAACCCCAACAACCATACAAACGCTGCATTGCTGAAACATTCAAAGATTTTCCTTCTTCTTCTCTACCTCTTATCGAATCTCTCCTTTCAATGGACCCCGATGGGCGAGGTACTGCCACTGCTGCTTTGAATAGCGAATTCTTTACTACGGAGCCTCTTGCTTGTGAATCATCAAGTCTACCTAAATATCCTCCTAGCAAAGAATTGGATGTAAAGTTGAGAGATGAGGAAGCTAGAAGGCAACGAGGTCTAAGTGGGAAAGCAACAGGTGATGGTGGAGGCAGGAGAGTAAGAGTACGGGATCGGGTTGGTCGGGCTGTCCCGGCACCTGAAGCTAATGCAGAGATACAAGCAAACTTAGATAGGTGGAGAAATGTGACAAATGCAAATGGTAAGAGCAAGAGCGAGAAGTTTCCCCCACCTCATCAAGATGGGGCAGTGGGGTACCCGCCACATGAGATATCCCAGAGGGGCCATCTTTCATTTGGTGCAGCTGATTCTTCATTCAGCTCCTCCATTTTTAGTTCAAAGTCTGGTTCTGTTAAAAGTTCAGCAGCTCCTGGGGGACCATCTCGGAGAAAGAAAGCAGATAAAGATAACCCTTCGATGTCTTCATCTCGAAAATTCATCCGTGCATTGAAGCCATCAATCGGGTTATCAATGGATCTGTTGTTTAGGGGTAAATAA 1698 47.35 MGCVLGRQTADARLGTSGPPRRRRTTDQLFHMDGVNGDRVKKQTTTLENQGVRQDLDSFSVERRRPSPSLCQRNEQGWPSWLLAVAGEVIQGWTPRRANTFEKLAKIGQGTYSNVYKARDLITGKIVALKKVRFDNLEPESVRFMAREILVLKRLDHPNVLKLEGLVTSRMSCSLYLVFEYMEHDLAGLAAGQGVKFTEPQVKCYMKQLLSGLEHCHNRGVLHRDIKGSNLLIDNEGILKIADFGLATFFDPEQNQHMTSRVVTLWYRPPELLLGATLYGTGVDLWSAGCILAELLAGRPIMPGRTEVEQLHKIFKLCGSPSEDYWKKYKLANATLFKPQQPYKRCIAETFKDFPSSSLPLIESLLSMDPDGRGTATAALNSEFFTTEPLACESSSLPKYPPSKELDVKLRDEEARRQRGLSGKATGDGGGRRVRVRDRVGRAVPAPEANAEIQANLDRWRNVTNANGKSKSEKFPPPHQDGAVGYPPHEISQRGHLSFGAADSSFSSSIFSSKSGSVKSSAAPGGPSRRKKADKDNPSMSSSRKFIRALKPSIGLSMDLLFRGK 565
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
3 4241619 4245215 - CePI673135_03g003810.1 Cec03g0381 198005
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cec03g0381 565 SMART serkin_6 101 385 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec03g0381 565 MobiDBLite consensus disorder prediction 510 546 - -
Cec03g0381 565 Gene3D Transferase(Phosphotransferase) domain 1 184 423 - -
Cec03g0381 565 FunFam probable serine/threonine-protein kinase At1g54610 184 425 - -
Cec03g0381 565 ProSitePatterns Serine/Threonine protein kinases active-site signature. 221 233 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cec03g0381 565 MobiDBLite consensus disorder prediction 393 489 - -
Cec03g0381 565 Pfam Protein kinase domain 101 385 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec03g0381 565 MobiDBLite consensus disorder prediction 404 421 - -
Cec03g0381 565 ProSitePatterns Protein kinases ATP-binding region signature. 107 130 IPR017441 GO:0005524(InterPro)
Cec03g0381 565 MobiDBLite consensus disorder prediction 1 28 - -
Cec03g0381 565 MobiDBLite consensus disorder prediction 42 72 - -
Cec03g0381 565 Gene3D Phosphorylase Kinase; domain 1 88 183 - -
Cec03g0381 565 FunFam probable serine/threonine-protein kinase At1g54610 88 183 - -
Cec03g0381 565 CDD STKc_CDK9_like 101 385 - -
Cec03g0381 565 ProSiteProfiles Protein kinase domain profile. 101 385 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cec03g0381 565 MobiDBLite consensus disorder prediction 457 471 - -
Cec03g0381 565 MobiDBLite consensus disorder prediction 42 56 - -
Cec03g0381 565 PANTHER CELL DIVISION PROTEIN KINASE 100 385 IPR050108 GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0005634(PANTHER)|GO:0006468(PANTHER)|GO:0008353(PANTHER)|GO:0032968(PANTHER)|GO:0070816(PANTHER)
Cec03g0381 565 SUPERFAMILY Protein kinase-like (PK-like) 94 389 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cec03g0381 Cec-Chr3:4241619 Cec03g1707 Cec-Chr3:35313914 4.30E-190 dispersed
Cec03g0381 Cec-Chr3:4241619 Cec05g0684 Cec-Chr5:5607655 2.20E-202 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
71810 PF00069 Pkinase 2.10E-67 CL0016 Cec PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cec03g0381 K08819 - csv:101205716 987.638